Contig 009503:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025D13Sequence645009503 (3)ref|XP_006357592.1|2e-23PREDICTED: hepatoma-derived growth factor-related protein 2-like [Solanum tuber783014079 (13)ref|XP_004243582.1|6e-76PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1 [Solanum lycopersicum] ref
JMSF028L15Sequence645009503 (3)ref|XP_006357592.1|2e-23PREDICTED: hepatoma-derived growth factor-related protein 2-like [Solanum tuber714014079 (13)ref|XP_004243582.1|3e-76PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1 [Solanum lycopersicum] ref
JMSF042F01Sequence289009503 (3)ref|XP_006357592.1|6e-09PREDICTED: hepatoma-derived growth factor-related protein 2-like [Solanum tuber998014079 (13)ref|XP_004243582.1|6e-75PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1 [Solanum lycopersicum] ref

Alignment

This contig is upended


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JMSF028L15+                         GAGTCCAAATCAGTCTTCCTTGGATCTATGCTCTTCACCTTGAGCA
JMSF025D13+                         GAGTCCAAATCAGTCTTCCTTGGATCTATGCTCTTCACCTTGAGCA
                      ____________________________________________________________
consensus                           GAGTCCAAATCAGTCTTCCTTGGATCTATGCTCTTCACCTTGAGCA
 
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JMSF028L15+           ATACATCACTTAGCGATTTCTCCTTTCGTTTTGGCTTTGCCCTCACGGATCCTTCAGAGT
JMSF025D13+           ATACATCACTTAGCGATTTCTCCTTTCGTTTTGGCTTTGCCCTCACGGATCCTTCAGAGT
                      ____________________________________________________________
consensus             ATACATCACTTAGCGATTTCTCCTTTCGTTTTGGCTTTGCCCTCACGGATCCTTCAGAGT
 
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JMSF028L15+           CTCCAGGCATACTAGATTGCGCATTTGTTGGTCTACTAGTAGTTAATTTCACCTCGATCT
JMSF025D13+           CTCCAGGCATACTAGATTGCGCATTTGTTGGTCTACTAGTAGTTAATTTCACCTCGATCT
                      ____________________________________________________________
consensus             CTCCAGGCATACTAGATTGCGCATTTGTTGGTCTACTAGTAGTTAATTTCACCTCGATCT
 
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JMSF028L15+           CCATATCCATCTTTTTCAAGTACCTTTCTCTGCCAGCAGCACCTCCTCTGGGTTAGGCTT
JMSF025D13+           CCATATCCATCTTTTTCAAGTACCTTTCTCTGCCAGCAGCACCTCCTCTGGGTTAGGCTT
                      ____________________________________________________________
consensus             CCATATCCATCTTTTTCAAGTACCTTTCTCTGCCAGCAGCACCTCCTCTGGGTTAGGCTT
 
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JMSF028L15+           GTGCACCTCATTCACATTGTCACCTCCCTGTTCATTTTCAGGTGATTCCAAAACCAATCT
JMSF025D13+           GTGCACCTCATTCACATTGTCACCTCCCTGTTCATTTTCAGGTGATTCCAAAACCAATCT
                      ____________________________________________________________
consensus             GTGCACCTCATTCACATTGTCACCTCCCTGTTCATTTTCAGGTGATTCCAAAACCAATCT
 
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JMSF028L15+           CTCAACTCCATCCCGCAACCAGCGCATAGGTTCAGGCCTCGAGTCTCTGATTCCCGAACC
JMSF025D13+           CTCAACTCCATCCCGCAACCAGCGCATAGGTTCAGGCCTCGAGTCTCTGATTCCCGAACC
                      ____________________________________________________________
consensus             CTCAACTCCATCCCGCAACCAGCGCATAGGTTCAGGCCTCGAGTCTCTGATTCCCGAACC
 
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JMSF028L15+           AAAAGTCGAAGATCTGGCAGGCGGTGGAGCAACGGGTTTCTTCGAGGCGCCCCAGTTGTC
JMSF025D13+           AAAAGTCGAAGATCTGGCAGGCGGTGGAGCAACGGGTTTCTTCGAGGCGCCCCAGTTGTC
JMSF042F01+                         TGGCAGGCGGTGGAGCAACGGGTTTNTTNGAGGCGCCCCAGTTGTC
                      ____________________________________________________________
consensus             AAAAGTCGAAGATCTGGCAGGCGGTGGAGCAACGGGTTTCTTCGAGGCGCCCCAGTTGTC
 
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JMSF028L15+           AGCCGTAGATGCTTCACCACCGGCTCCGAAAGTACCATGCTTTGAACGAGCAGAAGCAGG
JMSF025D13+           AGCCGTAGATGCTTCACCACCGGCTCCGAAAGTACCATGCTTTGAACGAGCAGAAGCAGG
JMSF042F01+           AGCCGTAGATGCTTCACCNCCGGCTCCGAAAGTACCATGCTTTGAACGAGCAGAAGCAGG
                      ____________________________________________________________
consensus             AGCCGTAGATGCTTCACCACCGGCTCCGAAAGTACCATGCTTTGAACGAGCAGAAGCAGG
 
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JMSF028L15+           AGTAAAATTGTACGATAATAAGGGTTTCTTTGCTGATTCCAAGTTATCAATCTCGTCAGC
JMSF025D13+           AGTAAAATTGTACGATAATAAGGGTTTCTTTGCTGATTCCAAGTTATCAATCTCGTCAGC
JMSF042F01+           AGTAAAATTGTACGATAATAAGGGTTTCTTTGCTGATTCCAAGTTATCAATCTCGTCAGC
                      ____________________________________________________________
consensus             AGTAAAATTGTACGATAATAAGGGTTTCTTTGCTGATTCCAAGTTATCAATCTCGTCAGC
 
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JMSF028L15+           TCTCGAGGATTGATCGAAATCCGCAGCCCTAGATGGTGGGCCCTCAGCAAACCGCTTTTT
JMSF025D13+           TCTCGAGGATTGATCGAAATCCGCAGCCCTAGATGGTGGGCCCTCAGCAAACCGCTTTTT
JMSF042F01+           TCTCGAGGATTGATCGAAATCCGCAGCCCTAGATGGTGGGCCCTCAGCAAACCGCTTTTT
                      ____________________________________________________________
consensus             TCTCGAGGATTGATCGAAATCCGCAGCCCTAGATGGTGGGCCCTCAGCAAACCGCTTTTT
 
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JMSF028L15+           GGGACACCTCGTAGGGAGCCGGAGCGTCGAGCCGTAGCCATGACAAGAGCCATA      
JMSF025D13+           GGGACACCTCGTAGGGAGCCGGAGCGTCGAGCCGTAGCCATGACAAGAGCCATA      
JMSF042F01+           GGGACACCTCGTAGGGAGCCGGAGCGTCGAGCCGTAGCCATGACAAGAGCCATATCGTGC
                      ____________________________________________________________
consensus             GGGACACCTCGTAGGGAGCCGGAGCGTCGAGCCGTAGCCATGACAAGAGCCATATCGTGC