| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS029C07 | Sequence | 627 | 009500 (5) | ||||||||
| JMFS092D09 | Sequence | 630 | 009500 (5) | ||||||||
| JMSF021J18 | Sequence | 666 | 009500 (5) | ref|XP_009624658.1| | 5e-31 | PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X | 640 | 013964 (5) | ref|XP_009624659.1| | 3e-12 | PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X |
| JMSF028O12 | Sequence | 719 | 009500 (5) | 623 | 013964 (5) | ref|XP_009624659.1| | 9e-17 | PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X | |||
| JMSF042B08 | Sequence | 459 | 009500 (5) | ref|XP_009785624.1| | 3e-06 | PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X | 561 | 013964 (5) | ref|XP_008378585.1| | 2e-11 | PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X |
This contig is upended
. : . : . : . : . : . :
JMSF028O12+ TGAGA
____________________________________________________________
consensus TGAGA
. : . : . : . : . : . :
JMSF028O12+ CATAAAGGCCGTACACAGTTCAGTAGGTGGACACTCCAAAAGTCCTGCCGCTGAAGATGC
____________________________________________________________
consensus CATAAAGGCCGTACACAGTTCAGTAGGTGGACACTCCAAAAGTCCTGCCGCTGAAGATGC
. : . : . : . : . : . :
JMSF028O12+ AATACAAAGGAGTATGAATTTGGCACAACAAAATGTAGATATGTGAACACCAGAGTATAT
JMFS092D09+ CAGAGTATAT
____________________________________________________________
consensus AATACAAAGGAGTATGAATTTGGCACAACAAAATGTAGATATGTGAACACCAGAGTATAT
. : . : . : . : . : . :
JMSF028O12+ ATACTATATAAAAATGAAAATCACAATAGCTAACAAGAATAATTACAGTAAATGCTAGTT
JMFS092D09+ ATTCTATATAAAAATGAAAATCACAATAGCTAACAAGAATAATTACAGTAAATGCTAGTT
JMFS029C07+ T
____________________________________________________________
consensus ATTCTATATAAAAATGAAAATCACAATAGCTAACAAGAATAATTACAGTAAATGCTAGTT
. : . : . : . : . : . :
JMSF028O12+ AAAGACAAAAGGCTGAACAAGAAAGAAAGTTTAGCAGTGCTCTTAGTCTCTTACCAAACA
JMFS092D09+ AAAGACAAAAGGCTGAACAAGAAAGAAAGTTTAGCAGTGCTCTTAGTCTCTTACCAAACA
JMFS029C07+ AAAGACAAAAGGCTGAACAAGAAAGANAGTTTAGCAGTGCTCTTAGTCTCTTACCAAACA
____________________________________________________________
consensus AAAGACAAAAGGCTGAACAAGAAAGAAAGTTTAGCAGTGCTCTTAGTCTCTTACCAAACA
. : . : . : . : . : . :
JMSF028O12+ GTAGGCTGAAGAACTTCAAAATTTTTACCATCAAACAAACATATGCATTCTCAATTAAGA
JMFS092D09+ GTAGGCTGAAGAACTTCAAAATTTTTACCATCAAACAAACATATGCATTCTCAATTAAGA
JMFS029C07+ GTAGGCTGAAGAACTTCAAAATTTTTACCATCAAACAAACATATGCATTCTCAATTAAGA
____________________________________________________________
consensus GTAGGCTGAAGAACTTCAAAATTTTTACCATCAAACAAACATATGCATTCTCAATTAAGA
. : . : . : . : . : . :
JMSF028O12+ TGAACAATAAAAAGATTTAAGTCCAAAGCTAATAATTTATAGAACTGTTTGAAGACAAGG
JMFS092D09+ TGAACAATAAAAAGATTTAAGTCCAAAGCTAATAATTTATAGAACTGTTTGAAGACAAGG
JMFS029C07+ TGAACAATAAAAAGATTTAAGTCCAAAGCTAATAATTTATAGAACTGTTTGAAGACAAGG
____________________________________________________________
consensus TGAACAATAAAAAGATTTAAGTCCAAAGCTAATAATTTATAGAACTGTTTGAAGACAAGG
. : . : . : . : . : . :
JMSF028O12+ CTTGTAACAAGACAGGAAAAAAAGCCAAAATTAAAACAGTAACTAGATTTTCAAGCCAAA
JMFS092D09+ CTTGTAA-AAGACAGGAAAAAAAGCCAAAATTAAAACAGTAACTAGATTTTCAAGCCAAA
JMFS029C07+ CTTGTAA-AAGACAGGAAAAAAAGCCAAAATTAAAACAGTAACTAGATTTTCAAGCCAAA
____________________________________________________________
consensus CTTGTAA-AAGACAGGAAAAAAAGCCAAAATTAAAACAGTAACTAGATTTTCAAGCCAAA
. : . : . : . : . : . :
JMSF028O12+ ACTGAAAATTGTACCGAAAAATGTGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
JMFS092D09+ ACTGAAAATTGTACCGAAAAATGTGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
JMFS029C07+ ACTGAAAATTGTACCGAAAAATGTGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
JMSF021J18+ CGAAAAATGTGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
JMSF042B08+ TGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
____________________________________________________________
consensus ACTGAAAATTGTACCGAAAAATGTGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
. : . : . : . : . : . :
JMSF028O12+ TTATCAAACATGCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
JMFS092D09+ TTATCAAACATGCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
JMFS029C07+ TTATCAAACATGCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
JMSF021J18+ TTATCAAACATGCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
JMSF042B08+ TTATCAAACATNCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
____________________________________________________________
consensus TTATCAAACATGCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
. : . : . : . : . : . :
JMSF028O12+ CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAA
JMFS092D09+ CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAAGGAAGAAATTCCAGT
JMFS029C07+ CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAAGGAAGAAATTCCAGT
JMSF021J18+ CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAAGGAAGAAATTCCAGT
JMSF042B08+ CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAAGGAAGAAATTCCAGT
____________________________________________________________
consensus CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAAGGAAGAAATTCCAGT
. : . : . : . : . : . :
JMFS092D09+ AAAAAAACAATCTTTATGCACATAAGGAGAGCACCTTATATTCAAGACCTAAAACACCTT
JMFS029C07+ AAAAAAACAATCTTTATGCACATAAGGAGAGCACCTTATATTCAAGACCTAAAACACCTT
JMSF021J18+ AAAAAAACAATCTTTATGCACATAAGGAGAGCACCTTATATTCAAGACCTAAAACACCTT
JMSF042B08+ AAAAAAACAATCTTTATGCACATAAGGAGAGCACCTTATATTCAAGACCTAAAACACCTT
____________________________________________________________
consensus AAAAAAACAATCTTTATGCACATAAGGAGAGCACCTTATATTCAAGACCTAAAACACCTT
. : . : . : . : . : . :
JMFS092D09+ GAAATGGAAAGATTTTTTCAGCAGTTCCCGTTCGCGGAAACCGGAACAGTTTTATGTAGG
JMFS029C07+ GAAATGGAAAGATTTTTTCAGCAGTTCCCGTTCGCGGAAACCGGAACAGTTTTATGTGGG
JMSF021J18+ GAAATGGAAAGATTTTTTCAGCAGTTCCCGTTCGCGGAAACCGGAACAGTTTTATGTGGG
JMSF042B08+ GAAATGGAAAGATTTTTTCAGCAGTTCCCGTTCGCGGAAACCGGAACAGTTTTATGTGGG
____________________________________________________________
consensus GAAATGGAAAGATTTTTTCAGCAGTTCCCGTTCGCGGAAACCGGAACAGTTTTATGTGGG
. : . : . : . : . : . :
JMFS092D09+ GTTGGGAATATGAAATCGCGG
JMFS029C07+ GTTGGGAATATGAAATCGCGGGTCGCCGCCGGAAGTGATCGGAAACTACGCTACAGTTGC
JMSF021J18+ GTTGGGAATATGAAATCGCGGGTCGCCGCCGGAAGTGATCGGAAACTACGCTACAGTTGC
JMSF042B08+ GTTGGGAATATGAAATCGCGGGTCGCCGCCGGAAGTGATCGGAAACTACGCTACAGTTGC
____________________________________________________________
consensus GTTGGGAATATGAAATCGCGGGTCGCCGCCGGAAGTGATCGGAAACTACGCTACAGTTGC
. : . : . : . : . : . :
JMFS029C07+ GTGCTCAAGTGGATTACA
JMSF021J18+ GTGCTCAAGTGGATTACACCAACTGTTTTGGATAATTCCTCACGGGGTTCGATGTACGGT
JMSF042B08+ GTGCTCAAGTGGATTACACCAACTGTTTTGGATAATTCCTCACGGGGTTCGATGTACGGT
____________________________________________________________
consensus GTGCTCAAGTGGATTACACCAACTGTTTTGGATAATTCCTCACGGGGTTCGATGTACGGT
. : . : . : . : . : . :
JMSF021J18+ TAACTCTTACGTGTCACGATT
JMSF042B08+ TAACTCTTACGTGTCACGATTGGATTCAGACAAGAGAATTATTGAAAAGAAAACGTGGCC
____________________________________________________________
consensus TAACTCTTACGTGTCACGATTGGATTCAGACAAGAGAATTATTGAAAAGAAAACGTGGCC