Contig 009499:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF042A22Sequence461009499 (2)emb|CBI30170.3|4e-52unnamed protein product [Vitis vinifera]
JMSF042K06Sequence667009499 (2)ref|XP_006381374.1|3e-83hypothetical protein POPTR_0006s12310g [Populus trichocarpa] gb|ERP59171.1| hypo549005220 (13)ref|XP_004247636.1|2e-16PREDICTED: transcription factor UNE12-like [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF042K06+                                                              GAAGTGTAA
                      ____________________________________________________________
consensus                                                                GAAGTGTAA
 
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JMSF042K06+           TTGCAACGTGAACATTTTTGTGTCTGGATCCCAATGTGAGAAGAATTTTGGAGTTGACTT
                      ____________________________________________________________
consensus             TTGCAACGTGAACATTTTTGTGTCTGGATCCCAATGTGAGAAGAATTTTGGAGTTGACTT
 
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JMSF042K06+           GTCAATCTCTGTGCTTGGTACCTTAAAAGAAATGATCTCATATGGTTCTGCAGCAAACAA
                      ____________________________________________________________
consensus             GTCAATCTCTGTGCTTGGTACCTTAAAAGAAATGATCTCATATGGTTCTGCAGCAAACAA
 
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JMSF042K06+           AAGATATTGATATCTTTTGTCAAATGGCTGGATTTTCTGCTCAAAGGAGGACATAAATCT
                      ____________________________________________________________
consensus             AAGATATTGATATCTTTTGTCAAATGGCTGGATTTTCTGCTCAAAGGAGGACATAAATCT
 
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JMSF042K06+           ATGCCTTGGCTTTGTATTGTCTTCAATCTCAGGATATTCAATCTGAAAAAGGAGAGATCT
JMSF042A22+                              TCTTCAATCTCAGGATATTCAATCTGAAAAAGGAGAGATCT
                      ____________________________________________________________
consensus             ATGCCTTGGCTTTGTATTGTCTTCAATCTCAGGATATTCAATCTGAAAAAGGAGAGATCT
 
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JMSF042K06+           TTGTTTGTCTCTGGATCAAACTGTTTTGTCACCCGATAGCCAGGCCTACCAATTTCCACG
JMSF042A22+           TTGTTTGTCTNTGGATCAAACTGTTTTGTCACCCGATANCCAGGCCTACCAATTTCCACG
                      ____________________________________________________________
consensus             TTGTTTGTCTCTGGATCAAACTGTTTTGTCACCCGATAGCCAGGCCTACCAATTTCCACG
 
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JMSF042K06+           GTCTTTTTGAGCGAGACTTTGCGTTTATGAGGTTGCGGCTGAGCAGGCGCCTCCTTGGCT
JMSF042A22+           GTCTTTTTGAGCGAGACTNTGCGTTTATGAGGTTGCGGCTGAGCAGGCGCCTCNTTGGCT
                      ____________________________________________________________
consensus             GTCTTTTTGAGCGAGACTTTGCGTTTATGAGGTTGCGGCTGAGCAGGCGCCTCCTTGGCT
 
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JMSF042K06+           TCGCGGGCAGCTCGCTTAGCCAAATTGGTCTGGTGGCGCTTCCCTTGAGTATGGGCCAAG
JMSF042A22+           TCGCGGGCAGCTCGNTTAGCCAAATTGGTCTGGTGGCGCTTCCCTTGAGTATGGGCCAAG
                      ____________________________________________________________
consensus             TCGCGGGCAGCTCGCTTAGCCAAATTGGTCTGGTGGCGCTTCCCTTGAGTATGGGCCAAG
 
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JMSF042K06+           TAATTTCCCTCATTGTTGTGCAAAGTCAAGCAAAGCTTACACTCATAGCTTCCAAGGTGG
JMSF042A22+           TAATTTCCCTCATTGTTGTGCAAAGTCAAGCAAAGCTTACACTCATAGCTTCCAAGGTGG
                      ____________________________________________________________
consensus             TAATTTCCCTCATTGTTGTGCAAAGTCAAGCAAAGCTTACACTCATAGCTTCCAAGGTGG
 
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JMSF042K06+           TTTCGCATAAAGTAAGGATCTTTGGCGAGGTCGATCGTCTCAAGGGCTAGCCTCCGTAGC
JMSF042A22+           TTTCGCATAAAGTAAGGATCTTTGGCGAGGTCGATCGTCTCAAGGGCTAGCCTCCGTAGC
                      ____________________________________________________________
consensus             TTTCGCATAAAGTAAGGATCTTTGGCGAGGTCGATCGTCTCAAGGGCTAGCCTCCGTAGC
 
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JMSF042K06+           CGTTCGCGGCGGTCGATTGCCTCATTCTGAGCGGAGGCGGCTCCTCCGCTCCCCGGCTTC
JMSF042A22+           CGTTCGCGGCGGTCGATTGCCTCATTNTGAGCGGAGGCGGCTCCTCCGCTCCCCGGCTTC
                      ____________________________________________________________
consensus             CGTTCGCGGCGGTCGATTGCCTCATTCTGAGCGGAGGCGGCTCCTCCGCTCCCCGGCTTC
 
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JMSF042K06+           GATCCCCAGTCTCGGTCCATTGCCAAA-CTGAGTTTTTAATTCTTTCTCACTCTCTA   
JMSF042A22+           GATCCCCAGTCTCGGTCCATTGCCAAAGCTGAGTTTTTAATTCTTTCTCACTCTCTAGCC
                      ____________________________________________________________
consensus             GATCCCCAGTCTCGGTCCATTGCCAAAGCTGAGTTTTTAATTCTTTCTCACTCTCTAGCC