Contig 009493:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041I02Sequence762009493 (2)ref|XP_004246564.1|2e-46PREDICTED: pre-mRNA cleavage complex 2 protein Pcf11-like [Solanum lycopersicum749024649ref|XP_009765950.1|4e-44PREDICTED: cyclin-dependent kinase 12-like isoform X2 [Nicotiana sylvestris]
JMSF046C06Sequence362009493 (2)

Alignment

This contig is upended


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JMSF041I02+                            CTTCACAATACTATCCAAAAGATAGAGAGATGGCAGCTTTTGC
                      ____________________________________________________________
consensus                              CTTCACAATACTATCCAAAAGATAGAGAGATGGCAGCTTTTGC
 
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JMSF041I02+           TCACTAGAAACCTCAAGAATGTGGGTGCAGATAGTGGCCGCAATCCCTCTGGCAGCATGC
                      ____________________________________________________________
consensus             TCACTAGAAACCTCAAGAATGTGGGTGCAGATAGTGGCCGCAATCCCTCTGGCAGCATGC
 
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JMSF041I02+           GAATTTTCACCGGCAATGATAGTTAAGTTGGTAATTATTGGCTTGGAGTTAAACGTGAGC
                      ____________________________________________________________
consensus             GAATTTTCACCGGCAATGATAGTTAAGTTGGTAATTATTGGCTTGGAGTTAAACGTGAGC
 
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JMSF041I02+           TCAGCCAACGCCGCCTTATACTGACGGACCAGCTCGTGATGCTGCTGTGGCGGAAATGGC
                      ____________________________________________________________
consensus             TCAGCCAACGCCGCCTTATACTGACGGACCAGCTCGTGATGCTGCTGTGGCGGAAATGGC
 
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JMSF041I02+           CCACGAACTGAATCACTACTCTCAGCGTCACCTCTGTCACTATGCTGAAATCTTGAACTG
                      ____________________________________________________________
consensus             CCACGAACTGAATCACTACTCTCAGCGTCACCTCTGTCACTATGCTGAAATCTTGAACTG
 
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JMSF041I02+           ACCGGCCGTTGCTGAATAAAACCCCGTCCGCTAGAACTAAGATCGGGAGCAGCATCTTCT
                      ____________________________________________________________
consensus             ACCGGCCGTTGCTGAATAAAACCCCGTCCGCTAGAACTAAGATCGGGAGCAGCATCTTCT
 
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JMSF041I02+           GCTAACCTCGCTTTCTTCAGCCCCGGCTCAACTCTTGGCCCGTCAAACGGTCTACGAGAA
                      ____________________________________________________________
consensus             GCTAACCTCGCTTTCTTCAGCCCCGGCTCAACTCTTGGCCCGTCAAACGGTCTACGAGAA
 
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JMSF046C06+           CCCTTCATCTCCNTCAANTTTTCTAAAAAGCCCTANCCNTAGTNCACGCTACGTTACAAC
JMSF041I02+           CCCTTCATCTCCATCAACTTTTCTAAAAAGCCCTAACCCTAGTTCACGCTACGTTACAAC
                      ____________________________________________________________
consensus             CCCTTCATCTCCATCAACTTTTCTAAAAAGCCCTAACCCTAGTTCACGCTACGTTACAAC
 
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JMSF046C06+           AATTACTNCAAATCTTCCGTTTNAAATCTAAAGACAGAGAGAAAGAGGAAATACATTGGC
JMSF041I02+           AATTACTACAAATCTTCCGTTTAAAATCTAAAGACAGAGAGAAAGAGGAAATACATTGGC
                      ____________________________________________________________
consensus             AATTACTACAAATCTTCCGTTTAAAATCTAAAGACAGAGAGAAAGAGGAAATACATTGGC
 
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JMSF046C06+           ATTNGAACGAGAACTCCAGCAAATCAAATTTAAGAAACGAAACTAAATTTTTNTATAAAA
JMSF041I02+           ATTTGAACGAGAACTACAGCAAATCAAATTTAAGAAACGAAACTAAATTTTTCTATAAAA
                      ____________________________________________________________
consensus             ATTTGAACGAGAACTCCAGCAAATCAAATTTAAGAAACGAAACTAAATTTTTCTATAAAA
 
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JMSF046C06+           AGAAAAAGTAAGAAACGAANCTAAATCTTTCTATAAATCAAATTTAAGAAACGAAAAGTT
JMSF041I02+           AGAAAAAGTAAGAAACGAAACTAAATCTTTCTATAAATCAAATTTAAGAAACGAAAAGTT
                      ____________________________________________________________
consensus             AGAAAAAGTAAGAAACGAAACTAAATCTTTCTATAAATCAAATTTAAGAAACGAAAAGTT
 
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JMSF046C06+           AAGAGCTAAGAGAGCCGAATTGACTTTTGGCGGGTGNAACCATGGAGGTCAAGCTGGTAA
JMSF041I02+           AAGAGCTAAGAGAGCCGAATTGACTTTTGGCGGGTGAAACCATGGAGGTCAA-CTGGTAA
                      ____________________________________________________________
consensus             AAGAGCTAAGAGAGCCGAATTGACTTTTGGCGGGTGAAACCATGGAGGTCAAGCTGGTAA
 
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JMSF046C06+           CACGACTTGGATCGAAGCTCAGGTTTCTGATTGATCGGAAATAGAATCAGTGCAGCGTCC
JMSF041I02+           CACGACTTGGATCGAAGCTCAGGTTTCTGATTGATCGGAAATAGAATCAGTGCAGCGTCC
                      ____________________________________________________________
consensus             CACGACTTGGATCGAAGCTCAGGTTTCTGATTGATCGGAAATAGAATCAGTGCAGCGTCC