Contig 009492:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS040E09Sequence622009492 (3)gb|EYU36907.1|1e-10hypothetical protein MIMGU_mgv1a001615mg [Erythranthe guttata]
JMFS106G03Sequence632009492 (3)ref|XP_009772834.1|2e-60PREDICTED: B3 domain-containing transcription repressor VAL1-like [Nicotiana sy
JMSF041H17Sequence446009492 (3)687018304ref|XP_009603864.1|3e-39PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1 [N

Alignment

This contig is upended


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JMFS106G03+                                                                   CTTG
                      ____________________________________________________________
consensus                                                                     CTTG
 
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JMFS106G03+           CCTAATTGCAGAAGCCTTCCCTTTTCTAAAATATTCTCATCCATTCTATTTTCAACACGG
                      ____________________________________________________________
consensus             CCTAATTGCAGAAGCCTTCCCTTTTCTAAAATATTCTCATCCATTCTATTTTCAACACGG
 
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JMFS106G03+           ATGGTATGTGTATCATCCTTGTTCTTCATGGCCAAGATGCCACTAGGCACATCATCATTA
                      ____________________________________________________________
consensus             ATGGTATGTGTATCATCCTTGTTCTTCATGGCCAAGATGCCACTAGGCACATCATCATTA
 
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JMFS106G03+           GGTATCTGTATTGGTCTCAAAGCTTGACCCCCCAATATCCTTGCACAGCTTAAACATACT
                      ____________________________________________________________
consensus             GGTATCTGTATTGGTCTCAAAGCTTGACCCCCCAATATCCTTGCACAGCTTAAACATACT
 
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JMFS106G03+           ATTCCTCCAAGATCCATATATTCAAACAGATATTTTGATGCAATGCACCCGCAGTGAATA
                      ____________________________________________________________
consensus             ATTCCTCCAAGATCCATATATTCAAACAGATATTTTGATGCAATGCACCCGCAGTGAATA
 
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JMFS106G03+           CGCTTTCTACACATTCTGCACTCCTTCCAACCAGACTCATCCAGGTGGAACGTTTCACAA
                      ____________________________________________________________
consensus             CGCTTTCTACACATTCTGCACTCCTTCCAACCAGACTCATCCAGGTGGAACGTTTCACAA
 
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JMFS106G03+           AAAGCTACCTTTTCGTAAGCAGATCCGCAGCTGTAACAAAGGATAGCAAATCCACCTGAT
JMFS040E09+                                                        GCAAATCCACCTGAT
                      ____________________________________________________________
consensus             AAAGCTACCTTTTCGTAAGCAGATCCGCAGCTGTAACAAAGGATAGCAAATCCACCTGAT
 
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JMFS106G03+           TTCAAGCCCCAACCTTTTTTCCATTCAGACGACGTCGTCGAGCAGCAGAGCTCGTTCATG
JMFS040E09+           TTCAAGCCCCAACCTTTCTTCCATTCAGACGACGTCGTCGCACGACACAGCTCGTTCATG
                      ____________________________________________________________
consensus             TTCAAGCCCCAACCTTTTTTCCATTCAGACGACGTCGTCGCGCGGCAGAGCTCGTTCATG
 
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JMFS106G03+           CAAACATTTGACCCCATT                                          
JMFS040E09+           CAAAACTTTGACCCCATTTCTCTCACCAAAATCAAACCTTCCAACCCCCCCAAAACACCT
                      ____________________________________________________________
consensus             CAAACCTTTGACCCCATTTCTCTCACCAAAATCAAACCTTCCAACCCCCCCAAAACACCT
 
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JMFS040E09+           CCAAACCTCAAAACTCCTCAAATCAAATCAAAACCCTAAATCCCAATCAACAAATCTCTA
JMSF041H17+                                                     CCAATCAACAAATCTNTA
                      ____________________________________________________________
consensus             CCAAACCTCAAAACTCCTCAAATCAAATCAAAACCCTAAATCCCAATCAACAAATCTCTA
 
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JMFS040E09+           ACCCAGATCAACAACCAAAAATCCCATATCCAATACCTTAACACACCAATAATCAAACAC
JMSF041H17+           ACCCAGATCAACAACCAAAAATCCCATATCCAATACCTTAACACACCAATAATCAAACAC
                      ____________________________________________________________
consensus             ACCCAGATCAACAACCAAAAATCCCATATCCAATACCTTAACACACCAATAATCAAACAC
 
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JMFS040E09+           TAACAACACTTTACAGCTCACCCAGTTCAATCTATCGAATGCAACGTCCACGCAGACCAA
JMSF041H17+           TAACAACACTTTACAGCTCACCCAGTTCAATCTATCGAATGCAACGTCCACGCAGACCAA
                      ____________________________________________________________
consensus             TAACAACACTTTACAGCTCACCCAGTTCAATCTATCGAATGCAACGTCCACGCAGACCAA
 
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JMFS040E09+           AAGCAACCCTCATCAACAATCCATCTCCCTGCTATTGCATGAAATCTGAACTGAATCTCA
JMSF041H17+           AAGCAACCCTCATCAACAATCCATCTCCCTGCTATTGCATGAAATCTGAACTGAATCTCA
                      ____________________________________________________________
consensus             AAGCAACCCTCATCAACAATCCATCTCCCTGCTATTGCATGAAATCTGAACTGAATCTCA
 
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JMFS040E09+           CGGGTCAAAGCAGCGAAAAACGGCGGCGGTCGGCGGTCGGCGGCGGTCGGTGGTTCTTGG
JMSF041H17+           CGGGTCAAAGCAGCGAAAAACGGCGGCGGTCGGCGGTCGGCGGCGGTCGGTGGTTCTTGG
                      ____________________________________________________________
consensus             CGGGTCAAAGCAGCGAAAAACGGCGGCGGTCGGCGGTCGGCGGCGGTCGGTGGTTCTTGG
 
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JMFS040E09+           TAGGGGATAAAGAAGGGTAACGATACAGATCGATTAACCAGTATATTTTTTGTTTAAATT
JMSF041H17+           TAGGGGATAAAGAAGGGTAACGATACAGATCGATTAACCAGTATATTTTTTGTTTAAATT
                      ____________________________________________________________
consensus             TAGGGGATAAAGAAGGGTAACGATACAGATCGATTAACCAGTATATTTTTTGTTTAAATT
 
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JMFS040E09+           TAGAGCGAGAAACTACGAGTGTGAATTAGAGAGAGAAAGCGTGTGCATGCAGAGCAAACA
JMSF041H17+           TAGAGCGAGAAACTACGAGTGTGAATTAGAGAGAGAAAGCGTGTGCATGCAGAGCAAACA
                      ____________________________________________________________
consensus             TAGAGCGAGAAACTACGAGTGTGAATTAGAGAGAGAAAGCGTGTGCATGCAGAGCAAACA
 
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JMFS040E09+           ACAGGGTAGAGTTAGAGAGAGAAAGCCAAGAAAAAGATAGCCCAAAATG           
JMSF041H17+           ACAGGGTAGAGTTAGAGAGAGAAAGCCAAGAAAAAGATAGCCCAAAATGCATGCACGATC
                      ____________________________________________________________
consensus             ACAGGGTAGAGTTAGAGAGAGAAAGCCAAGAAAAAGATAGCCCAAAATGCATGCACGATC