Contig 009491:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041F24Sequence608009491 (2)ref|XP_006365409.1|279PREDICTED: uncharacterized protein LOC102586921 [Solanum tuberosum]681009491 (2)ref|XP_004235783.1|2e-95PREDICTED: uncharacterized protein LOC101247900 isoform X1 [Solanum lycopersicu

Alignment

This contig is upended


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rJMSF041F24-                                                          CATACATACTTT
                      ____________________________________________________________
consensus                                                             CATACATACTTT
 
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rJMSF041F24-          TGGCATAAGCTATGACTATCTGGTCAGTCTTTGTTAATACAGAAAAAAGAATCATTCATA
                      ____________________________________________________________
consensus             TGGCATAAGCTATGACTATCTGGTCAGTCTTTGTTAATACAGAAAAAAGAATCATTCATA
 
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rJMSF041F24-          ATACATCAAGTCCATAAACCACTCAACTCATCTTCATCTCCGCATCATTCCCTCCATAGC
                      ____________________________________________________________
consensus             ATACATCAAGTCCATAAACCACTCAACTCATCTTCATCTCCGCATCATTCCCTCCATAGC
 
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rJMSF041F24-          TTGTTCAGCTCAGTTCTTGAGGTAGATTCCGGCTATACAAAGGAAATTCGAAGAGGAACA
                      ____________________________________________________________
consensus             TTGTTCAGCTCAGTTCTTGAGGTAGATTCCGGCTATACAAAGGAAATTCGAAGAGGAACA
 
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rJMSF041F24-          CCGTTTTGAACCACTGGGGCAGGTTCCCATATACTGCAGGTGGCAGCAGAATGAGTGGGC
                      ____________________________________________________________
consensus             CCGTTTTGAACCACTGGGGCAGGTTCCCATATACTGCAGGTGGCAGCAGAATGAGTGGGC
 
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rJMSF041F24-          TTGTTTCTCTCTTATAGGACAGATATGCAGGGAGATTTCCATACTTCTTATCTGCAGATT
                      ____________________________________________________________
consensus             TTGTTTCTCTCTTATAGGACAGATATGCAGGGAGATTTCCATACTTCTTATCTGCAGATT
 
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rJMSF041F24-          CCTCGAGCAATGGTAAACCACTAACAAAAAGCAGCAACAAGGTAATAAAAACCGGACTAA
                      ____________________________________________________________
consensus             CCTCGAGCAATGGTAAACCACTAACAAAAAGCAGCAACAAGGTAATAAAAACCGGACTAA
 
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rJMSF041F24-          ACACAACAAGCCATTCGGCGCCTTTTAACACAGGAGTAGAAGCCACGAAAATTCCCCACC
                      ____________________________________________________________
consensus             ACACAACAAGCCATTCGGCGCCTTTTAACACAGGAGTAGAAGCCACGAAAATTCCCCACC
 
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rJMSF041F24-          AGAGAACAATCTCACCAAAGTAGTTTGGATGACGAGAGTACTTCCAAACTCCAACATCAC
JMSF041F24+                                                               AACATCAC
                      ____________________________________________________________
consensus             AGAGAACAATCTCACCAAAGTAGTTTGGATGACGAGAGTACTTCCAAACTCCAACATCAC
 
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rJMSF041F24-          ACCATTTTCCCCTATTTTCGGGAGAATTTTTGAATGCCAACTTCTGTTGGTCAGCAGTAA
JMSF041F24+           ACCATTTTCCCCTATTTTCGGGAGAATTTTTGAATGCCAACTTCTGTTGGTCAGCAGTAA
                      ____________________________________________________________
consensus             ACCATTTTCCCCTATTTTCGGGAGAATTTTTGAATGCCAACTTCTGTTGGTCAGCAGTAA
 
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rJMSF041F24-          CCTCAACTATAATCCCGAAAGCCCACATAAGCCAGCCAATGATGTCTCTAGCTTGAAGAG
JMSF041F24+           CCTCAACTATAATCCCGAAAGCCCACATAAGCCAGCCAATGATGTCTCTAGCTTGAAGAG
                      ____________________________________________________________
consensus             CCTCAACTATAATCCCGAAAGCCCACATAAGCCAGCCAATGATGTCTCTAGCTTGAAGAG
 
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rJMSF041F24-          ATGGTTGATTGTCACTTGCATTGACAACCGTTAAAGGTAAACTCACAGTCCACACCCAGA
JMSF041F24+           ATGGTTGATTGTCACTTGCATTGACAACCGTTAAAGGTAAACTCACAGTCCACACCCAGA
                      ____________________________________________________________
consensus             ATGGTTGATTGTCACTTGCATTGACAACCGTTAAAGGTAAACTCACAGTCCACACCCAGA
 
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rJMSF041F24-          TTGCCTGAA                                                   
JMSF041F24+           TTGCCTGAAATGTCCAAAATATTGCCAATCTTCCTAGCTGATCCCGCTTTCCATCAAAAC
                      ____________________________________________________________
consensus             TTGCCTGAAATGTCCAAAATATTGCCAATCTTCCTAGCTGATCCCGCTTTCCATCAAAAC
 
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JMSF041F24+           GTCGGTCCTCCCCCCACTGCATTATCCTTATTAACAGAAAGAGTCCAAGCCGAAGACCCC
                      ____________________________________________________________
consensus             GTCGGTCCTCCCCCCACTGCATTATCCTTATTAACAGAAAGAGTCCAAGCCGAAGACCCC
 
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JMSF041F24+           ATATCACTACTAGCACAGACAAAATCACCTGCCGAAAATGCCATGAACCCTTCAGAGCCA
                      ____________________________________________________________
consensus             ATATCACTACTAGCACAGACAAAATCACCTGCCGAAAATGCCATGAACCCTTCAGAGCCA
 
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JMSF041F24+           AGGTCAATATGGCAAGTATAACAAAATTTGTGCTTCCTGCAAAGTCAGTGACTTTATCGA
                      ____________________________________________________________
consensus             AGGTCAATATGGCAAGTATAACAAAATTTGTGCTTCCTGCAAAGTCAGTGACTTTATCGA
 
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JMSF041F24+           ATTTGAGAAGAGCCGTGACTATGAAGAAGATGAATTGATAAACCACGGTAACAATGGCAG
                      ____________________________________________________________
consensus             ATTTGAGAAGAGCCGTGACTATGAAGAAGATGAATTGATAAACCACGGTAACAATGGCAG
 
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JMSF041F24+           TTATGGCGAAGAAATGGGAGTCGATAACGGTGCCCATGATAATCTGCTTCGGAAATCACA
                      ____________________________________________________________
consensus             TTATGGCGAAGAAATGGGAGTCGATAACGGTGCCCATGATAATCTGCTTCGGAAATCACA
 
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JMSF041F24+           ACACAACTCCTTTTTAGCTCTATCTGGTCTGGGCGGGCAAGACAGAACAGGATAACGTTC
                      ____________________________________________________________
consensus             ACACAACTCCTTTTTAGCTCTATCTGGTCTGGGCGGGCAAGACAGAACAGGATAACGTTC