Contig 009487:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010C01Sequence101009487 (3)802005547 (7)ref|NP_001234281.1|8e-120vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu
JMFF020E12Sequence115009487 (3)721005547 (7)ref|NP_001234281.1|6e-100vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu
JMSF041B16Sequence141009487 (3)659005547 (7)dbj|BAA89598.1|4e-89vacuolar H+-ATPase A subunit [Citrus unshiu]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020E12+                     TTNAAATCCNNNAGAGAANNGTAAGTTCTGNGTAGAGAGAGNGAGAGAGA
JMFF010C01+                                                        AGAGAGAGAGAGAGA
JMSF041B16+                                                        AGAGAGNGAGAGAGA
                      ____________________________________________________________
consensus                       TTNAAATCCNNNAGAGAANNGTAAGTTCTGNGTAGAGAGAGAGAGAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020E12+           GAGAGAGAGAGAGAGAGAGAGAGAGGGATTGAAGAAGAAGCAGTATGAAGTCTGAGGTGA
JMFF010C01+           GAGAGAGAGAGAGAGAGAGAGAGAGGGATTGAAGAAGAAGCAGTATGAAGTCTGAGGTGA
JMSF041B16+           GAGAGAGAGAGAGAGAGAGAGAGAGGGATTGAAGAAGAAGCAGTATGAAGTCTGAGGTGA
                      ____________________________________________________________
consensus             GAGAGAGAGAGAGAGAGAGAGAGAGGGATTGAAGAAGAAGCAGTATGAAGTCTGAGGTGA
 
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JMFF020E12+           TGAAT                                                       
JMFF010C01+           TGAATGATGGCGCTCGTTAACT                                      
JMSF041B16+           TGAATGATGGCGCTCGTTAACTGTTGAGCCTTATGCGAAGGGACGGATTTGGAGCCGGTC
                      ____________________________________________________________
consensus             TGAATGATGGCGCTCGTTAACTGTTGAGCCTTATGCGAAGGGACGGATTTGGAGCCGGTC