| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN039E08 | Sequence | 609 | 009486 (6) | ref|XP_004507417.1| | 3e-75 | PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like | |||||
| JMSF021A11 | Sequence | 539 | 009486 (6) | ref|XP_004507417.1| | 2e-50 | PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like | |||||
| JMSF028B09 | Sequence | 669 | 009486 (6) | ref|XP_004507417.1| | 3e-74 | PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like | 794 | 009486 (6) | gb|KJB32183.1| | 4e-111 | hypothetical protein B456_005G228000 [Gossypium raimondii] |
| JMSF040F23 | Sequence | 644 | 009486 (6) | ref|XP_004507417.1| | 2e-66 | PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like | 821 | 009486 (6) | ref|XP_009631771.1| | 2e-130 | PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isof |
This contig is upended
. : . : . : . : . : . :
rJMSF028B09- CATTGGCCTTGAGATTA
____________________________________________________________
consensus CATTGGCCTTGAGATTA
. : . : . : . : . : . :
rJMSF028B09- ATGAAAATATAATAATACAAATAAATAAGATATTCCACTTTCATTGAGTTGAATAATTTT
rJMSF040F23- TAATACAAATAAATAAGATATTCCACTTTCATTGAGTTGAATAATTTT
____________________________________________________________
consensus ATGAAAATATAATAATACAAATAAATAAGATATTCCACTTTCATTGAGTTGAATAATTTT
. : . : . : . : . : . :
rJMSF028B09- GGTACAAAAGGAGGTCCTAAAGGTAAAACGTGAAGGACAAAATAGCTGCTGGCTAGGTGT
rJMSF040F23- GGTACAAAAGGAGGTCCTAAAGGTAAAACGTGAAGGACAAAATAGCTGCTGGCTAGGTGT
____________________________________________________________
consensus GGTACAAAAGGAGGTCCTAAAGGTAAAACGTGAAGGACAAAATAGCTGCTGGCTAGGTGT
. : . : . : . : . : . :
rJMSF028B09- ATTTAGGTTAAGCTCCTTTACAAAGTCTGGGCACAGCAACAGATGATCTTCATCAGAACA
rJMSF040F23- ATTTAGGTTAAGCTCCTTTACAAAGTCTGGGCACAGCAACAGATGATCTTCATCAGAACA
____________________________________________________________
consensus ATTTAGGTTAAGCTCCTTTACAAAGTCTGGGCACAGCAACAGATGATCTTCATCAGAACA
. : . : . : . : . : . :
rJMSF028B09- TCATATCTTCCATCTAATATTCAGTTTCCAGTATCCCATCAATAAGCCCAAAGTCCATAG
rJMSF040F23- TCATATCTTCCATCTAATATTCAGTTTCCAGTATCCCATCAATAAGCCCAAAGTCCATAG
____________________________________________________________
consensus TCATATCTTCCATCTAATATTCAGTTTCCAGTATCCCATCAATAAGCCCAAAGTCCATAG
. : . : . : . : . : . :
rJMSF028B09- CCTCAGCAGCAGACATAAAATAATCCCGTTCGGTGAAGTCTTGAACTTTCTCAAGTGGTT
rJMSF040F23- CCTCAGCAGCAGACATAAAATAATCCCGTTCGGTGAAGTCTTGAACTTTCTCAAGTGGTT
____________________________________________________________
consensus CCTCAGCAGCAGACATAAAATAATCCCGTTCGGTGAAGTCTTGAACTTTCTCAAGTGGTT
. : . : . : . : . : . :
rJMSF028B09- GGCCGGTAAAGGCAGCAAACATTTTGTCAATTTTATGGCGAGATTGAACCGCTTCATTCA
rJMSF040F23- GGCCGGTAAAGGCAGCAAACATTTTGTCAATTTTATGGCGAGATTGAACCGCTTCATTCA
____________________________________________________________
consensus GGCCGGTAAAGGCAGCAAACATTTTGTCAATTTTATGGCGAGATTGAACCGCTTCATTCA
. : . : . : . : . : . :
rJMSF028B09- CTTGGCGCCTCACATCCTCCACATGACCCCCGCATCCACTTTGTGGTTGATGTACCATAA
rJMSF040F23- CTTGGCGCCTCACATCCTCCACATGACCCCCGCATCCACTTTGTGGTTGATGTACCATAA
____________________________________________________________
consensus CTTGGCGCCTCACATCCTCCACATGACCCCCGCATCCACTTTGTGGTTGATGTACCATAA
. : . : . : . : . : . :
rJMSF028B09- TACGTGCATTTGGCATTGCATACCGCATACCCTTTTCCCCACCTGCAAGAAGAAGTGTCC
rJMSF040F23- TACGTGCATTTGGCATTGCATACCGCATACCCTTTTCCCCACCTGCAAGAAGAAGTGTCC
JMFN039E08+ TGCAAGAAGAAGTGTCC
JMSF028B09+ TGCAAGAAGAAGTGTCC
____________________________________________________________
consensus TACGTGCATTTGGCATTGCATACCGCATACCCTTTTCCCCACCTGCAAGAAGAAGTGTCC
. : . : . : . : . : . :
rJMSF028B09- CTTGACTTGCAGCAACTCCAAAACATACTGTACCGACCCTAGGCTTTATCCAGGACATGC
rJMSF040F23- CTTGACTTGCAGCAACTCCAAAACATACTGTACCGACCCTAGGCTTTATCCAGGACATGC
JMFN039E08+ CTTGACTTGCAGCAACTCCAAAACATACTGTACCGACCCTAGGCTTTATCCAGGACATGC
JMSF028B09+ CTTGACTTGCAGCAACTCCAAAACATACTGTACCGACCNTAGGCTTTATCCAGGACATGC
JMSF040F23+ TCCAAAACATACTGTACCGACCCTAGGCTTTATCCAGGACATGC
____________________________________________________________
consensus CTTGACTTGCAGCAACTCCAAAACATACTGTACCGACCCTAGGCTTTATCCAGGACATGC
. : . : . : . : . : . :
rJMSF028B09- AGTCATATATTGCCATCACAGAATACGTGCTTCCGCCTGGGCAGTTAATATACATCAAAA
rJMSF040F23- AGTCATATATTGCCATCACAGAATACGTGCTTCCGCCTGGGCAGTTAATATACATCAAAA
JMFN039E08+ AGTCATATATTGCCATCACAGAATACGTGCTTCCGCCTGGGCAGTTAATATACATCAAAA
JMSF021A11+ TCACAGAATACGTGCTTCCGCCTGGGCAGTTAATATACATCAAAA
JMSF028B09+ AGTCATATATTGCCATCACAGAATACGTGCTTCCGCCTGGGCAGTTAATATACATCAAAA
JMSF040F23+ AGTCATATATTGCCATCACAGAATACGTGCTTCCGCCTGGGCAGTTAATATACATCAAAA
____________________________________________________________
consensus AGTCATATATTGCCATCACAGAATACGTGCTTCCGCCTGGGCAGTTAATATACATCAAAA
. : . : . : . : . : . :
rJMSF028B09- TATCAGCATTTTCATCAATTGTTGCTAGTGTTACGAGTTGTGATATGACTCTTTGAGCAA
rJMSF040F23- TATCAGCATTTTCATCAATTGTTGCTAGTGTTACGAGTTGTGATATGACTCTTTGAGCAA
JMFN039E08+ TATCAGCATTTTCATCAATTGTTGCTAGTGTTACGAGTTGTGATATGACTCTTTGAGCAA
JMSF021A11+ TATCAGCATTTTCATCAATTGTTGCTAGTGTTACGAGTTGTGATATGACTCTTTGAGCAA
JMSF028B09+ TATCAGCATTTTCATCAATTGTTGCTAGTGTTACGAGTTGTGATATGACTCTTTGAGCAA
JMSF040F23+ TATCAGCATTTTCATCAATTGTTGCTAGTGTTACGAGTTGTGATATGACTCTTTGAGCAA
____________________________________________________________
consensus TATCAGCATTTTCATCAATTGTTGCTAGTGTTACGAGTTGTGATATGACTCTTTGAGCAA
. : . : . : . : . : . :
rJMSF028B09- CTTGTCCGTTGACTGGTTGTCCAACGAAGACAATGCGATTTCT-AACAATACCATAGATA
rJMSF040F23- CTTGTCCGTTGACTGGTTGTCCAACGAAGACAATGCGATTTCTAAACAATACCATTGATA
JMFN039E08+ CTTGTCCGTTGACTGGTTGTCCAACGAAGACAATGCGATTTCTAAACAATACCATTGATA
JMSF021A11+ CTTGTCCGTTGACTGGTTGTCCAACGAAGACAATGCGATTTCTAAACAATACCATTGATA
JMSF028B09+ CTTGTCCGTTGACTGGTTGTCCAACGAAGACAATGCGATTTCTAAACAATACCATAGATA
JMSF040F23+ CTTGTCCGTTGACTGGTTGTCCAACGAAGACAATGCGATTTCTAAACAATACCATTGATA
____________________________________________________________
consensus CTTGTCCGTTGACTGGTTGTCCAACGAAGACAATGCGATTTCTAAACAATACCATTGATA
. : . : . : . : . : . :
rJMSF028B09- GATCCAATACGCCACCTGGTGTCAGCACAGCAGGCATTACAGGTGGATT
rJMSF040F23- GATCCAATACGCCACCTGGTGTCAGCACAGCAGGCATTACAGGTGGATTTCCCCTTCTAG
JMFN039E08+ GATCCAATACGCCACCTGGTGTCAGCACAGCAGGCATTACAGGTGGATTTCCCCTTCTAG
JMSF021A11+ GATCCAATACGCCACCTGGTGTCAGCACAGCAGGCATTACAGGTGGATTTCCCCTTCTAG
JMSF028B09+ GATCCAATACGCCACCTGGTGTCAGCACAGCAGGCATTACAGGTGGATTTCCCCTTCTAG
JMSF040F23+ GATCCAATACGCCACCTGGTGTCAGCACAGCAGGCATTACAGGTGGATTTCCCCTTCTAG
____________________________________________________________
consensus GATCCAATACGCCACCTGGTGTCAGCACAGCAGGCATTACAGGTGGATTTCCCCTTCTAG
. : . : . : . : . : . :
rJMSF040F23- CTTCAATAGTGCCATAACGTCGATTATTATCAGCCTTTGGGTTGTTCTGACCA
JMFN039E08+ CTTCAATAGTGCCATAACGTCGATTATTATCAGCCTTTGGGTTGTTCTGACCAAGTTTTA
JMSF021A11+ CTTCAATAGTGCCATAACGTCGATTATTATCAGCCTTTGGGTTGTTCTGACCAAGTTTTA
JMSF028B09+ CTTCAATAGTGCCATAACGTCGATTATTATCAGCCTTTGGGTTGTTCTGACCAAGTTTTA
JMSF040F23+ CTTCAATAGTGCCATAACGTCGATTATTATCAGCCTTTGGGTTGTTCTGACCAAGTTTTA
____________________________________________________________
consensus CTTCAATAGTGCCATAACGTCGATTATTATCAGCCTTTGGGTTGTTCTGACCAAGTTTTA
. : . : . : . : . : . :
JMFN039E08+ AGCGCAATCCCTGCACCTTACTGGATAGTCCGATTTTTGAGGAATCAAAACTGTGGCTAG
JMSF021A11+ AGCGCAATCCCTGCACCTTACTGGATAGTCCGATTTTTGAGGAATCAAAACTGTGGCTAG
JMSF028B09+ AGCGCAATCCCTGCACCTTACTGGATAGTCCGATTTTTGAGGAATCAAAACTGTGGCTAG
JMSF040F23+ AGCGCAATCCCTGCACCTTACTGGATAGTCCGATTTTTGAGGAATCAAAACTGTGGCTAG
____________________________________________________________
consensus AGCGCAATCCCTGCACCTTACTGGATAGTCCGATTTTTGAGGAATCAAAACTGTGGCTAG
. : . : . : . : . : . :
JMFN039E08+ G-AAGCGCAGACGCTATTTGTTTCCCTAAGCTTCTGCGGGAGAACAGAGGCGGCGAAGAG
JMSF021A11+ G-AAGCGCAGACGCTATTTGTTTCCCTAAGCTTCTGCGGGAGAACAGAGGCGGCGAAGAG
JMSF028B09+ G-AAGCGCAGACGCTATTTGTTTCCCTAAGCTTCTGCGGGAGAACAGAGGCGGCGAAGAG
JMSF040F23+ GAAAGCGCAGACGCTATTTGTTTCCCTAAGCTTCTGCGGGAGAACAGAGGCGGCGAAGAG
____________________________________________________________
consensus G-AAGCGCAGACGCTATTTGTTTCCCTAAGCTTCTGCGGGAGAACAGAGGCGGCGAAGAG
. : . : . : . : . : . :
JMFN039E08+ CGAAGCGACGTTGGTCGGTGAAGTGAGGCGATTGAAGCTTTAGAAGGCGCTGTAATGGTT
JMSF021A11+ CGAAGCGACGTTGGTCGGTGAAGTGAGGCGATTGAAGCTTTAGAAGGCGCTGTAATGGTT
JMSF028B09+ CGAAGCGACGTTGGTCGGTGAAGTGAGGCGATTGAAGCTTTAGAAGGCGCTGTAATGGTT
JMSF040F23+ CGAAGCGACGTTGGTCGGTGAAGTGAGGCGATTGAAGCTTTAGAAGGCGCTGTAATGGTT
____________________________________________________________
consensus CGAAGCGACGTTGGTCGGTGAAGTGAGGCGATTGAAGCTTTAGAAGGCGCTGTAATGGTT
. : . : . : . : . : . :
JMFN039E08+ GATGCTGCCATTTCCGGCACTGCAGCGAAAGGGTCGAGCACTCGAGCGTATGC
JMSF021A11+ GATGCTGCCATTTCCGGCACTGCAGCGAAAGGGTCGAGCACTCGAGCGTATGCGATAGAG
JMSF028B09+ GATGCTGCCATTTCCGGCACTGCAGCGAAAGGGTCGAGCACTCGAGCGTATGCGATAGAG
JMSF040F23+ GATGCTGCCATTTCCGGCACTGCAGCGAAAGGGTCGAGCACTCGAGCGTATGCGATAGAG
____________________________________________________________
consensus GATGCTGCCATTTCCGGCACTGCAGCGAAAGGGTCGAGCACTCGAGCGTATGCGATAGAG
. : . : . : . : . : . :
JMSF021A11+ CAAAATCAAGCTGC
JMSF028B09+ CAAAATCAAGCTGCTTCTCAGACTTCTGGTAAAACCCGGATAAGAATTTC
JMSF040F23+ CAAAATCAAGCTGCTTCTCAGACTTCTGGTAAAACCCGGATAAGAATTTCGGATCCCCGC
____________________________________________________________
consensus CAAAATCAAGCTGCTTCTCAGACTTCTGGTAAAACCCGGATAAGAATTTCGGATCCCCGC