Contig 009479:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS001E08Sequence606009479 (6)ref|XP_006348951.1|1e-09PREDICTED: mitogen-activated protein kinase 20-like isoform X2 [Solanum tuberos
JMFS092H01Sequence622009479 (6)gb|ACJ85655.1|2e-22unknown [Medicago truncatula]
JMFS117D03Sequence564009479 (6)ref|XP_010102159.1|8e-04hypothetical protein L484_021393 [Morus notabilis] gb|EXB92409.1| hypothetical p
JMFS148A01Sequence618009479 (6)gb|ACJ85655.1|4e-20unknown [Medicago truncatula]
JMSF036P12Sequence621009479 (6)ref|XP_008380212.1|2e-51PREDICTED: mitogen-activated protein kinase 20 [Malus domestica]711002943 (2)ref|XP_009597023.1|2e-66PREDICTED: mitogen-activated protein kinase 20 isoform X2 [Nicotiana tomentosif
JMSF038L06Sequence659009479 (6)gb|ACJ85655.1|3e-22unknown [Medicago truncatula]883002943 (2)ref|XP_009597022.1|5e-83PREDICTED: mitogen-activated protein kinase 20 isoform X1 [Nicotiana tomentosif

Alignment

This contig is upended


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JMSF036P12+                 GCTCGAAAACAACATAAATATCTTTGAACTCCCGACTTGAAGGTGGAAGCATAA
                      ____________________________________________________________
consensus                   GCTCGAAAACAACATAAATATCTTTGAACTCCCGACTTGAAGGTGGAAGCATAA
 
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JMSF036P12+           TATGCTTAATTTCTACAATGTCAGGATGCCGTAGAAGCCTCAAAAGCTTTATCTCACGCA
                      ____________________________________________________________
consensus             TATGCTTAATTTCTACAATGTCAGGATGCCGTAGAAGCCTCAAAAGCTTTATCTCACGCA
 
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JMSF036P12+           GAATACGAGCAGCATCAGATATGTGTTCAAAAATATCATGTATTTTCTTAATAGCAACCT
                      ____________________________________________________________
consensus             GAATACGAGCAGCATCAGATATGTGTTCAAAAATATCATGTATTTTCTTAATAGCAACCT
 
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JMSF036P12+           TCTCGCCGGTATGAGTGTCAATTGCAGAGCAAACAACACCATAACTTCCTTTTCCTATGA
JMFS092H01+            CTCGCCGGTATGAGTGTCAATTGCAGAGCAAACAACACCATAACTTCCTTTTCCTATGA
JMFS001E08+                            TCAATTGCAGAGCAAACAACACCATAACTTCCTTTTCCTATGA
JMFS148A01+                    TATGAGTGTCAATTGCAGAGCAAACAACACCATAACTTCCTTTTCCTATGA
JMSF038L06+            CTCGCCGGTATGAGTGTCAATTGCAGAGCAAACAACACCATAACTTCCTTTTCCTATGA
                      ____________________________________________________________
consensus             TCTCGCCGGTATGAGTGTCAATTGCAGAGCAAACAACACCATAACTTCCTTTTCCTATGA
 
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JMSF036P12+           CCTCCTGAATCTTGTATCGATTCGCATCACCATATTCAGAGAAGAACTCCATCTCTGTTG
JMFS092H01+           CCTCCTGAATCTTGTATCGATTCGCATCACCATATTCAGAGAAGAACTCCATCTCTGTTG
JMFS001E08+           CCTCCTGAATCTTGTATCGATTCGCATCACCATATTCAGAGAAGAACTCCATCTCTGTTG
JMFS148A01+           CCTCCTGAATCTTGTATCGATTCGCATCACCATATTCAGAGAAGAACTCCATCTCTGTTG
JMSF038L06+           CCTCCTGAATCTTGTATCGATTCGCATCACCATATTCAGAGAAGAACTCCATCTCTGTTG
                      ____________________________________________________________
consensus             CCTCCTGAATCTTGTATCGATTCGCATCACCATATTCAGAGAAGAACTCCATCTCTGTTG
 
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JMSF036P12+           AACTACTTTTACGATGATCAGGCTGCATGATTTCTCACAATCACTCCCAAAACCCTAACA
JMFS092H01+           AACTACTTTTACGATGATCAGGCTGCATGATTTCTCACAATCACTCCCAAAACCCTAACA
JMFS001E08+           AACTACTTNTACGATGATCAGGCTGCATGATTTCTCACAATCACTCCCAAAACCCTAACA
JMFS117D03+                    TACGATGATCAGGCTGCATGATTTCTCACAATCACTCCCAAAACCCTAACA
JMFS148A01+           AACTACTTTTACGATGATCAGGCTGCATGATTTCTCACAATCACTCCCAAAACCCTAACA
JMSF038L06+           AACTACTTTTACGATGATCAGGCTGCATGATTTCTCACAATCACTCCCAAAACCCTAACA
                      ____________________________________________________________
consensus             AACTACTTTTACGATGATCAGGCTGCATGATTTCTCACAATCACTCCCAAAACCCTAACA
 
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JMSF036P12+           AAAGCAGCGATTGAAAACCGAATTGTACGAACCAAAGCCCACCAATTTCAAAGGAAAAAC
JMFS092H01+           AAAGCAGCGATTGAAAACCGAATTGTACGAACCAAAGCCCACCAATTTCAAAGGAAAAAC
JMFS001E08+           AAAGCAGCGATTGAAAACCGAATTGTACGAACCAAAGCCCACCAATTTCAAAGGAAAAAC
JMFS117D03+           AAAGCAGCGATTGAAAACCGAATTGTACGAACCAAAGCCCACCAATTTCAAAGGAAAAAC
JMFS148A01+           AAAGCAGCGATTGAAAACCGAATTGTACGAACCAAAGCCCACCAATTTCAAAGGAAAAAC
JMSF038L06+           AAAGCAGCGATTGAAAACCGAATTGTACGAACCAAAGCCCACCAATTTCAAAGGAAAAAC
                      ____________________________________________________________
consensus             AAAGCAGCGATTGAAAACCGAATTGTACGAACCAAAGCCCACCAATTTCAAAGGAAAAAC
 
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JMSF036P12+           TAAAAAAAGAACAGAATTACATTCAAGAATTTATCCACATTTGCCCCAGCGACCGCGGCT
JMFS092H01+           TAAAAAAAGAACAGAATTACATTCAAGAATTTATCCACATTTGCCCCAGCGACCGCGGCT
JMFS001E08+           TAAAAAAAGAACAGAATTACATTCAAGAATTTATCCACATTTGCCCCAGCGACCGCGGCT
JMFS117D03+           TAAAAAAAGAACAGAATTACATTCAAGAATTTATCCACATTTGCCCCAGCGACCGCGGCT
JMFS148A01+           TAAAAAAAGAACAGAATTACATTCAAGAATTTATCCACATTTGCCCCAGCGACCGCGGCT
JMSF038L06+           TAAAAAAAGAACAGAATTACATTCAAGAATTTATCCACATTTGCCCCAGCGACCGCGGCT
                      ____________________________________________________________
consensus             TAAAAAAAGAACAGAATTACATTCAAGAATTTATCCACATTTGCCCCAGCGACCGCGGCT
 
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JMSF036P12+           CCGGATTGTGAACGAGCAATCCCACCTAATACGCCTCGAATTATCCCAGAACAACAAATC
JMFS092H01+           CCGGATTGTGAACGAGCAATCCCACCTAATACGCCTCGAATTATCCCAGAACAACAAATC
JMFS001E08+           CCGGATTGTGAACGAGCAATCCCACCTAATACGCCTCGAATTATCCCAGAACAACAAATC
JMFS117D03+           CCGGATTGTGAACGAGCAATCCCACCTAATACGCCTCGAATTATCCCAGAACAACAAATC
JMFS148A01+           CCGGATTGTGAACGAGCAATCCCACCTAATACGCCTCGAATTATCCCAGAACAACAAATC
JMSF038L06+           CCGGATTGTGAACGAGCAATCCCACCTAATACGCCTCGAATTATCCCAGAACAACAAATC
                      ____________________________________________________________
consensus             CCGGATTGTGAACGAGCAATCCCACCTAATACGCCTCGAATTATCCCAGAACAACAAATC
 
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JMSF036P12+           CCCAGACTCTAAATCCCTCATACACTCTTCCTCACAATCACCCCCGGAAACGACGACGAC
JMFS092H01+           CCCAGACTCTAAATCCCTCATACACTCTTCCTCACAATCACCCCCGGAAACGACGACGAC
JMFS001E08+           CCCAGACTCTAAATCCCTCATACACTCTTCCTCACAATCACCCCCGGAAACGACGACGAC
JMFS117D03+           CCCAGACTCTAAATCCCTCATACACTCTTCCTCACAATCACCCCCGGAAACGACGACGAC
JMFS148A01+           CCCAGACTCTAAATCCCTCATACACTCTTCCTCACAATCACCCCCGGAAACGACGACGAC
JMSF038L06+           CCCAGACTCTAAATCCCTCATACACTCTTCCTCACAATCACCCCCGGAAACGACGACGAC
                      ____________________________________________________________
consensus             CCCAGACTCTAAATCCCTCATACACTCTTCCTCACAATCACCCCCGGAAACGACGACGAC
 
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JMSF036P12+           GACGCAGAGCTCCTCCCCACCACCT                                   
JMFS092H01+           GACGCAGAGCTCCTCCCCACCACCTCCGCCAATGCCCCTCCAAACAAAACCCTAATATAT
JMFS001E08+           GACGCAGAGCTCCTCCCCACCACCTCCGCCAATGCCCCTCCAAACAAAACCCTAATATAT
JMFS117D03+           GACGCAGAGCTCCTCCCCACCACCTCCGCCAATGCCCCTCCAAACAAAACCCTAATATAT
JMFS148A01+           GACGCAGAGCTCCTCCCCACCACCTCCGCCAATGCCCCTCCAAACAAAACCCTAATATAT
JMSF038L06+           GACGCAGAGCTCCTCCCCACCACCTCCGCCAATGCCCCTCCAAACAAAACCCTAATATAT
                      ____________________________________________________________
consensus             GACGCAGAGCTCCTCCCCACCACCTCCGCCAATGCCCCTCCAAACAAAACCCTAATATAT
 
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JMFS092H01+           ATGCATATATATATATCAAGATTGGGTAGATCTGAAGAAACCCCAGGTGGTGGTGAAGAG
JMFS001E08+           ATGCATATATATATATCAAGATTGGGTAGATCTGAAGAAACCCCAGGTGGTGGTGAAGAG
JMFS117D03+           ATGCATATATATATATCAAGATTGGGTAGATCTGAAGAAACCCCAGGTGGTGGTGAAGAG
JMFS148A01+           ATGCATATATATATATCAAGATTGGGTAGATCTGAAGAAACCCCAGGTGGTGGTGAAGAG
JMSF038L06+           ATGCATATATATATATCAAGATTGGGTAGATCTGAAGAAACCCCAGGTGGTGGTGAAGAG
                      ____________________________________________________________
consensus             ATGCATATATATATATCAAGATTGGGTAGATCTGAAGAAACCCCAGGTGGTGGTGAAGAG
 
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JMFS092H01+           CGGGATCTGACACCGACAATCGGTGTGCAGGAGAAGAGGGAGTTGGAGGAGTACAGATAC
JMFS001E08+           CGGGATCTGACACCGACAATCGGTGTGCAGGAGAAGAGGGAGTTGGAGGAGTACAGATAC
JMFS117D03+           CGGGATCTGACACCGACAATCGGTGTGCAGGAGAAGAGGGAGTTGGAGGAGTACAGATAC
JMFS148A01+           CGGGATCTGACACCGACAATCGGTGTGCAGGAGAAGAGGGAGTTGGAGGAGTACAGATAC
JMSF038L06+           CGGGATCTGACACCGACAATCGGTGTGCAGGAGAAGAGGGAGTTGGAGGAGTACAGATAC
                      ____________________________________________________________
consensus             CGGGATCTGACACCGACAATCGGTGTGCAGGAGAAGAGGGAGTTGGAGGAGTACAGATAC
 
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JMFS092H01+           AGAGGAGGGATAGAGAGATAAAA                                     
JMFS001E08+           AGAGGAGGGATAGAGAGATAAAA                                     
JMFS117D03+           AGAGGAGGGAT                                                 
JMFS148A01+           AGAGGAGGGATAGAGAGATAAAA                                     
JMSF038L06+           AGAGGAGGGATAGAGAGATAAAATGGAGACGTCTAGAGAGAGAAAGAGGAGGGGAATGCC
                      ____________________________________________________________
consensus             AGAGGAGGGATAGAGAGATAAAATGGAGACGTCTAGAGAGAGAAAGAGGAGGGGAATGCC