Contig 009475:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF038F20Sequence681009475 (2)ref|XP_009794344.1|2e-84PREDICTED: G2/mitotic-specific cyclin C13-1-like [Nicotiana sylvestris] emb|CAA6883009475 (2)emb|CDP01248.1|9e-103unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF038F20-                            CAGCATCAATGGTTAGTCTGTTATACACAATCTGACTATCAT
                      ____________________________________________________________
consensus                               CAGCATCAATGGTTAGTCTGTTATACACAATCTGACTATCAT
 
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rJMSF038F20-          CATATTCATAAATCAACAAACCTCTATGTAAAATCCGCTAAATTTGCATTACACCAAAAT
                      ____________________________________________________________
consensus             CATATTCATAAATCAACAAACCTCTATGTAAAATCCGCTAAATTTGCATTACACCAAAAT
 
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rJMSF038F20-          TCCAAGCCAAAAAATCTGGACTTTCCAAAAGTTACATTAATTCAGCAAGGGCAAACACAC
                      ____________________________________________________________
consensus             TCCAAGCCAAAAAATCTGGACTTTCCAAAAGTTACATTAATTCAGCAAGGGCAAACACAC
 
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rJMSF038F20-          TTGTCTAAGTCAGCAATTCAAACAGATACAAGATACACCAATCTTGCGTACCAATAAGGC
                      ____________________________________________________________
consensus             TTGTCTAAGTCAGCAATTCAAACAGATACAAGATACACCAATCTTGCGTACCAATAAGGC
 
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rJMSF038F20-          ATCGGGTGATATACAGGCTAGAACAAACATTTGTACCTCTGGGTTAATGAAGCTTCACCG
                      ____________________________________________________________
consensus             ATCGGGTGATATACAGGCTAGAACAAACATTTGTACCTCTGGGTTAATGAAGCTTCACCG
 
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rJMSF038F20-          CCTAAGCTAAGTTGTCACACAATCACTCATTGTACAATCACATCTTCGAAATAGGAATCT
                      ____________________________________________________________
consensus             CCTAAGCTAAGTTGTCACACAATCACTCATTGTACAATCACATCTTCGAAATAGGAATCT
 
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rJMSF038F20-          GGTATCTCGGGTGGGGATGAGAGCATTGATACACACTTGAACTTGTGTTGCTTGTATTTC
                      ____________________________________________________________
consensus             GGTATCTCGGGTGGGGATGAGAGCATTGATACACACTTGAACTTGTGTTGCTTGTATTTC
 
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rJMSF038F20-          TCCCTTACAGATATCAAAACACCTCCTCTTCTACTTAATTGCAAGTCATGTATTATCATA
                      ____________________________________________________________
consensus             TCCCTTACAGATATCAAAACACCTCCTCTTCTACTTAATTGCAAGTCATGTATTATCATA
 
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rJMSF038F20-          ACGCATTCCTTCAAAGAAGATGGTTTATATCCCGAATATTGTTGGAGTGCTTTGTTCCAG
                      ____________________________________________________________
consensus             ACGCATTCCTTCAAAGAAGATGGTTTATATCCCGAATATTGTTGGAGTGCTTTGTTCCAG
 
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rJMSF038F20-          GGATGCAGGTTTGGTTGAAGAGTAAACCTGGAAAGGAATATAACGGCAGCAGCTACCAAG
                      ____________________________________________________________
consensus             GGATGCAGGTTTGGTTGAAGAGTAAACCTGGAAAGGAATATAACGGCAGCAGCTACCAAG
 
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rJMSF038F20-          GAAGGCAAGAATTTAAGGCAGCTGTAATCCAACAAACTCAATTCGGCCAAGTAGTCGCCC
                      ____________________________________________________________
consensus             GAAGGCAAGAATTTAAGGCAGCTGTAATCCAACAAACTCAATTCGGCCAAGTAGTCGCCC
 
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rJMSF038F20-          AAAAACTCTAATTGCAATTTTGAAGTTTTATAGTCTTCTTGAGAAACTCGGGTAAACCTT
                      ____________________________________________________________
consensus             AAAAACTCTAATTGCAATTTTGAAGTTTTATAGTCTTCTTGAGAAACTCGGGTAAACCTT
 
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rJMSF038F20-          CTAAGAAACGTCTTGATTGTGGGACTGCCCAGTTCAAACTTGAGCGATTTGAGGACATCT
                      ____________________________________________________________
consensus             CTAAGAAACGTCTTGATTGTGGGACTGCCCAGTTCAAACTTGAGCGATTTGAGGACATCT
 
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rJMSF038F20-          GCCTCCATTTCTACCACTTCATCTTTGGTATAGGTGTTATCTGTAATGTAACAGAATTCT
JMSF038F20+                                                  TCTGTAATGTAACAGAATTCT
                      ____________________________________________________________
consensus             GCCTCCATTTCTACCACTTCATCTTTGGTATAGGTGTTATCTGTAATGTAACAGAATTCT
 
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rJMSF038F20-          TCGACATTGCGAGGACTGATCTCTTCATACTTTGAGGCAATAAGCATGGAAGAAACACCC
JMSF038F20+           TCGACATTGCGAGGACTGATCTCTTCATACTTTGAGGCAATAAGCATGGAAGAAACACCC
                      ____________________________________________________________
consensus             TCGACATTGCGAGGACTGATCTCTTCATACTTTGAGGCAATAAGCATGGAAGAAACACCC
 
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rJMSF038F20-          A                                                           
JMSF038F20+           AAAAGCTGAAGCTTTTGTCGGGTAAGAACATTTGTGGACAAGAATCTATCAATATAGGAA
                      ____________________________________________________________
consensus             AAAAGCTGAAGCTTTTGTCGGGTAAGAACATTTGTGGACAAGAATCTATCAATATAGGAA
 
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JMSF038F20+           ACAGCTAGATAAAGAGTATCTGGAAGGAGTACATATTCCTCTGCAACTTCAATCAACCAA
                      ____________________________________________________________
consensus             ACAGCTAGATAAAGAGTATCTGGAAGGAGTACATATTCCTCTGCAACTTCAATCAACCAA
 
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JMSF038F20+           TCTACCAAGATTCCTCTCATATTTGCACTCAAATCTTTCTGAACTCTCTCAATGTAATCA
                      ____________________________________________________________
consensus             TCTACCAAGATTCCTCTCATATTTGCACTCAAATCTTTCTGAACTCTCTCAATGTAATCA
 
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JMSF038F20+           GGCAATGGTCTGCTTTTCTGCTGAAACTCCATTTGGCGCATATACTCATAAATCTCAGAA
                      ____________________________________________________________
consensus             GGCAATGGTCTGCTTTTCTGCTGAAACTCCATTTGGCGCATATACTCATAAATCTCAGAA
 
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JMSF038F20+           TCATAGGCGGCGCACATCTGTGGGTCATCAGATTTCGCATCAATATCGGTTCCATTATCC
                      ____________________________________________________________
consensus             TCATAGGCGGCGCACATCTGTGGGTCATCAGATTTCGCATCAATATCGGTTCCATTATCC
 
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JMSF038F20+           TCATGTTTCCCCTTCTCCGTCACCCCTTTACCCGCAGCCTTCAAAACCTTCCTCTTAGCC
                      ____________________________________________________________
consensus             TCATGTTTCCCCTTCTCCGTCACCCCTTTACCCGCAGCCTTCAAAACCTTCCTCTTAGCC
 
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JMSF038F20+           CGCCTGGGCTTGGGTTTCTGTTGCTCCGAAATCTGACTCAGACCCACATTTGGGACGCTG
                      ____________________________________________________________
consensus             CGCCTGGGCTTGGGTTTCTGTTGCTCCGAAATCTGACTCAGACCCACATTTGGGACGCTG
 
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JMSF038F20+           GTAATCTCTCCCAAAACCACTCTTTTCTTGCTCTGCTGCTGCAGCTGAGCCGCCATCGAC
                      ____________________________________________________________
consensus             GTAATCTCTCCCAAAACCACTCTTTTCTTGCTCTGCTGCTGCAGCTGAGCCGCCATCGAC
 
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JMSF038F20+           TCCGCCGCCCTCTTCTTCGACAGCCGCGTCACTCTCGTGCAGTTCTCTTTGTCCGCCATT
                      ____________________________________________________________
consensus             TCCGCCGCCCTCTTCTTCGACAGCCGCGTCACTCTCGTGCAGTTCTCTTTGTCCGCCATT
 
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JMSF038F20+           GCTCTCATCTCCACCCTTTACAGAGCAGCAGTACTAAACACAAAGGATGGGTGAAGAGTC
                      ____________________________________________________________
consensus             GCTCTCATCTCCACCCTTTACAGAGCAGCAGTACTAAACACAAAGGATGGGTGAAGAGTC