Contig 009474:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS019C01Sequence559009474 (8)ref|XP_009779401.1|6e-34PREDICTED: geranylgeranyl transferase type-2 subunit alpha isoform X2 [Nicotian
JMFS047H11Sequence638009474 (8)ref|XP_009779401.1|5e-45PREDICTED: geranylgeranyl transferase type-2 subunit alpha isoform X2 [Nicotian
JMFS069C06Sequence627009474 (8)ref|XP_009779401.1|2e-34PREDICTED: geranylgeranyl transferase type-2 subunit alpha isoform X2 [Nicotian
JMFS100C08Sequence602009474 (8)ref|XP_009779401.1|4e-26PREDICTED: geranylgeranyl transferase type-2 subunit alpha isoform X2 [Nicotian
JMFS100C09Sequence602009474 (8)ref|XP_009779401.1|4e-26PREDICTED: geranylgeranyl transferase type-2 subunit alpha isoform X2 [Nicotian
JMFS101G11Sequence598009474 (8)ref|XP_009779401.1|1e-30PREDICTED: geranylgeranyl transferase type-2 subunit alpha isoform X2 [Nicotian
JMFS132F02Sequence621009474 (8)ref|XP_009779401.1|1e-33PREDICTED: geranylgeranyl transferase type-2 subunit alpha isoform X2 [Nicotian
JMSF038D14Sequence631009474 (8)ref|XP_009779401.1|1e-28PREDICTED: geranylgeranyl transferase type-2 subunit alpha isoform X2 [Nicotian183017228

Alignment

This contig is upended


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JMFS047H11+                   GCTAGAACCCACTTACGATGATACCATGCTCCATAAGACTTATAATTGCTCT
                      ____________________________________________________________
consensus                     GCTAGAACCCACTTACGATGATACCATGCTCCATAAGACTTATAATTGCTCT
 
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JMFS019C01+            CAATGCATTCACCACTAGTTTGAGTTCTTCACCGAGAATTGCTTTGATAGACTCGGCAT
JMFS047H11+           TCAATGCATTCACCACTAGTTTGAGTTCTTCACCGAGAATTGCTTTGATAGACTCGGCAT
JMFS069C06+                                  AGTTCTTCACCGAGAATTGCTTTGATAGACTCGGCAT
JMFS101G11+                                 GAGTTCTTCACCGAGAATTGCTTTGATAGACTCGGCAT
JMFS132F02+            CAATGCATTCACCACTAGTTTGAGTTCTTCACCGAGAATTGCTTTGATAGACTCGGCAT
JMFS100C09+                                                           TAGACTCGGCAT
JMFS100C08+                                                           TAGACTCGGCAT
JMSF038D14+                                        TCACCGAGAATTGCTTTGATAGACTCGGCAT
                      ____________________________________________________________
consensus             TCAATGCATTCACCACTAGTTTGAGTTCTTCACCGAGAATTGCTTTGATAGACTCGGCAT
 
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JMFS019C01+           TATTCTCAGTCTCAGATTGATTAAGTCGGTGATCTACAGCCAGCTTCCGGTAATTCCAAG
JMFS047H11+           TATTCTCAGTCTCAGATTGATTAAGTCGGTGATCTACAGCCAGCTTCCGGTAATTCCAAG
JMFS069C06+           TATTCTCAGTCTCAGATTGATTAAGTCGGTGATCTACAGCCAGCTTCCGGTAATTCCAAG
JMFS101G11+           TATTCTCAGTCTCAGATTGATTAAGTCGGTGATCTACAGCCAGCTTCCGGTAATTCCAAG
JMFS132F02+           TATTCTCAGTCTCAGATTGATTAAGTCGGTGATCTACAGCCAGCTTCCGGTAATTCCAAG
JMFS100C09+           TATTCTCAGTCTCAGATTGATTAAGTCGGTGATCTACAGCCAGCTTCCGGTAATTCCAAG
JMFS100C08+           TATTCTCAGTCTCAGATTGATTAAGTCGGTGATCTACAGCCAGCTTCCGGTAATTCCAAG
JMSF038D14+           TATTCTCAGTCTCAGATTGATTAAGTCGGTGATCTACAGCCAGCTTCCGGTAATTCCAAG
                      ____________________________________________________________
consensus             TATTCTCAGTCTCAGATTGATTAAGTCGGTGATCTACAGCCAGCTTCCGGTAATTCCAAG
 
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JMFS019C01+           CAGTGTAGTGCTCCGGATTGGCCTCGAGTAGCTTCGCGCTAAGTTCTAGCGCTTCCTTAT
JMFS047H11+           CAGTGTAGTGCTCCGGATTGGCCTCGAGTAGCTTCGCGCTAAGTTCTAGCGCTTCCTTAT
JMFS069C06+           CAGTGTAGTGCTCCGGATTGGCCTCGAGTAGCTTCGCGCTAAGTTCTAGCGCTTCCTTAT
JMFS101G11+           CAGTGTAGTGCTCCGGATTGGCCTCGAGTAGCTTCGCGCTAAGTTCTAGCGCTTCCTTAT
JMFS132F02+           CAGTGTAGTGCTCCGGATTGGCCTCGAGTAGCTTCGCGCTAAGTTCTAGCGCTTCCTTAT
JMFS100C09+           CAGTGTAGTGCTCCGGATTGGCCTCGAGTAGCTTCGCGCTAAGTTCTAGCGCTTCCTTAT
JMFS100C08+           CAGTGTAGTGCTCCGGATTGGCCTCGAGTAGCTTCGCGCTAAGTTCTAGCGCTTCCTTAT
JMSF038D14+           CAGTGTAGTGCTCCGGATTGGCCTCGAGTAGCTTCGCGCTAAGTTCTAGCGCTTCCTTAT
                      ____________________________________________________________
consensus             CAGTGTAGTGCTCCGGATTGGCCTCGAGTAGCTTCGCGCTAAGTTCTAGCGCTTCCTTAT
 
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JMFS019C01+           CATAAATTTTATTGTGATGAAAGTGGATGAACTGAGTTTGAAGAGATCGAAGCTTGGCGG
JMFS047H11+           CATAAATTTTATTGTGATGAAAGTGGATGAACTGAGTTTGAAGAGATCGAAGCTTGGCGG
JMFS069C06+           CATAAATTTTATTGTGATGAAAGTGGATGAACTGAGTTTGAAGAGATCGAAGCTTGGCGG
JMFS101G11+           CATAAATTTTATTGTGATGAAAGTGGATGAACTGAGTTTGAAGAGATCGAAGCTTGGCGG
JMFS132F02+           CATAAATTTTATTGTGATGAAAGTGGATGAACTGAGTTTGAAGAGATCGAAGCTTGGCGG
JMFS100C09+           CATAAATTTTATTGTGATGAAAGTGGATGAACTGAGTTTGAAGAGATCGAAGCTTGGCGG
JMFS100C08+           CATAAATTTTATTGTGATGAAAGTGGATGAACTGAGTTTGAAGAGATCGAAGCTTGGCGG
JMSF038D14+           CATAAATTTTATTGTGATGAAAGTGGATGAACTGAGTTTGAAGAGATCGAAGCTTGGCGG
                      ____________________________________________________________
consensus             CATAAATTTTATTGTGATGAAAGTGGATGAACTGAGTTTGAAGAGATCGAAGCTTGGCGG
 
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JMFS019C01+           CTTTGATCGCTGAAGCTTCTTGCTCTTCTTGGCTTGGAGCTCTTCGTGGTCTTCCATGCA
JMFS047H11+           CTTTGATCGCTGAAGCTTCTTGCTCTTCTTGGCTTGGAGCTCTTCGTGGTCTTCCATGCA
JMFS069C06+           CTTTGATCGCTGAAGCTTCTTGCTCTTCTTGGCTTGGAGCTCTTCGTGGTCTTCCATGCA
JMFS101G11+           CTTTGATCGCTGAAGCTTCTTGCTCTTCTTGGCTTGGAGCTCTTCGTGGTCTTCCATGCA
JMFS132F02+           CTTTGATCGCTGAAGCTTCTTGCTCTTCTTGGCTTGGAGCTCTTCGTGGTCTTCCATGCA
JMFS100C09+           CTTTGATCGCTGAAGCTTCTTGCTCTTCTTGGCTTGGAGCTCTTCGTGGTCTTCCATGCA
JMFS100C08+           CTTTGATCGCTGAAGCTTCTTGCTCTTCTTGGCTTGGAGCTCTTCGTGGTCTTCCATGCA
JMSF038D14+           CTTTGATCGCTGAAGCTTCTTGCTCTTCTTGGCTTGGAGCTCTTCGTGGTCTTCCATGCA
                      ____________________________________________________________
consensus             CTTTGATCGCTGAAGCTTCTTGCTCTTCTTGGCTTGGAGCTCTTCGTGGTCTTCCATGCA
 
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JMFS019C01+           TCTTTTCACACAAATTGTGGC-------CTGTTCTGCTCAACGGCGGCTTTGTGCGATCT
JMFS047H11+           TCTTTTCACACAAATTGTGGC-------CTGTTCTGCTCAACGGCGGCTTTGTGCGATCT
JMFS069C06+           TCTTTTCACACAAATTGTGGC-------CTGTTCTGCTCAACGGCGGCTTTGTGCGATCT
JMFS101G11+           TCTTTTCACACAAATTGTGGC-------CTGTTCTGCTCAACGGCGGCTTTGTGCGATCT
JMFS132F02+           TCTTTTCACACAAATTGTGGC-------CTGTTCTGCTCAACGGCGGCTTTGTGCGATCT
JMFS100C09+           TCTTTTCACACAAATTGTGGC-------CTGTTCTGCTCAACGGCGGCTTTGTGCGATCT
JMFS100C08+           TCTTTTCACACAAATTGTGGC-------CTGTTCTGCTCAACGGCGGCTTTGTGCGATCT
JMSF038D14+           TCTTTTCACACAAATTGTGGCCTAGGATCTGTTCTGCTCAACGGCGGCTTTGTGCGATCT
                      ____________________________________________________________
consensus             TCTTTTCACACAAATTGTGGC-------CTGTTCTGCTCAACGGCGGCTTTGTGCGATCT
 
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JMFS019C01+           ACGATCGGAGATGACGATCGGCGTCCCAAAACGTCACGGCGGCAACGATCGGTGCACGGC
JMFS047H11+           ACGATCGGAGATGACGATCGGCGTCCCAAAACGTCACGGCGGCAACGATCGGTGCACGGC
JMFS069C06+           ACGATCGGAGATGACGATCGGCGTCCCAAAACGTCACGGCGGCAACGATCGGTGCACGGC
JMFS101G11+           ACGATCGGAGATGACGATCGGCGTCCCAAAACGTCACGGCGGCAACGATCGGTGCACGGC
JMFS132F02+           ACGATCGGAGATGACGATCGGCGTCCCAAAACGTCACGGCGGCAACGATCGGTGCACGGC
JMFS100C09+           ACGATCGGAGATGACGATCGGCGTCCCAAAACGTCACGGCGGCAACGATCGGTGCACGGC
JMFS100C08+           ACGATCGGAGATGACGATCGGCGTCCCAAAACGTCACGGCGGCAACGATCGGTGCACGGC
JMSF038D14+           ACGATCGGAGATGACGATCGGCGTCCCAAAACGTCACGGCGGCAACGATCGGTGCACGGC
                      ____________________________________________________________
consensus             ACGATCGGAGATGACGATCGGCGTCCCAAAACGTCACGGCGGCAACGATCGGTGCACGGC
 
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JMFS019C01+           GGCGATGTGGTATGTTGGACGGCGTCTAAGCTGCGGATCGACGGAAGCCGAGGTGGGCGG
JMFS047H11+           GGCGATGTGGTATGTTGGACGGCGTCTAAGCTGCGGATCGACGGAAGCCGAGGTGGGCGG
JMFS069C06+           GGCGATGTGGTATGTTGGACGGCGTCTAAGCTGCGGATCGACGGAAGCCGAGGTGGGCGG
JMFS101G11+           GGCGATGTGGTATGTTGGACGGCGTCTAAGCTGCGGATCGACGGAAGCCGAGGTGGGCGG
JMFS132F02+           GGCGATGTGGTATGTTGGACGGCGTCTAAGCTGCGGATCGACGGAAGCCGAGGTGGGCGG
JMFS100C09+           GGCGATGTGGTATGTTGGACGGCGTCTAAGCTGCGGATCGACGGAAGCCGAGGTGGGCGG
JMFS100C08+           GGCGATGTGGTATGTTGGACGGCGTCTAAGCTGCGGATCGACGGAAGCCGAGGTGGGCGG
JMSF038D14+           GGCGATGTGGTATGTTGGACGGCGTCTAAGCTGCGGATCGACGGAAGCCGAGGTGGGCGG
                      ____________________________________________________________
consensus             GGCGATGTGGTATGTTGGACGGCGTCTAAGCTGCGGATCGACGGAAGCCGAGGTGGGCGG
 
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JMFS019C01+           AGCCGTTGCTGCGGCGAAGACAACCAGCGGCTGGAGGAGGCGGGTGACGGCCGGCTTCCT
JMFS047H11+           AGCCGTTGCTGCGGCGAAGACAACCAGCGGCTGGAGGAGGCGGGTGACGGCCGGCTTCCT
JMFS069C06+           AGCCGTTGCTGCGGCGAAGACAACCAGCGGCTGGAGGAGGCGGGTGACGGCCGGCTTCCT
JMFS101G11+           AGCCGTTGCTGCGGCGAAGACAACCAGCGGCTGGAGGAGGCGGGTGACGGCCGGCTTCCT
JMFS132F02+           AGCCGTTGCTGCGGCGAAGACAACCAGCGGCTGGAGGAGGCGGGTGACGGCCGGCTTCCT
JMFS100C09+           AGCCGTTGCTGCGGCGAAGACAACCAGCGGCTGGAGGAGGCGGGTGACGGCCGGCTTCCT
JMFS100C08+           AGCCGTTGCTGCGGCGAAGACAACCAGCGGCTGGAGGAGGCGGGTGACGGCCGGCTTCCT
JMSF038D14+           AGCCGTTGCTGCGGCGAAGACAACCAGCGGCTGGAGGAGGCGGGTGACGGCCGGCTTCCT
                      ____________________________________________________________
consensus             AGCCGTTGCTGCGGCGAAGACAACCAGCGGCTGGAGGAGGCGGGTGACGGCCGGCTTCCT
 
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JMFS019C01+           CCCGCGGTAGTGGCGACCGGCGGTGG                                  
JMFS047H11+           CCCGCGGTAGTGGCGACCGGCGGTGGCTAGCGGCGACCGGTGATGTTTTGCGA       
JMFS069C06+           CCCGCGGTAGTGGCGACCGGCGGTGGCTAGCGGCGACCGGTGATGTTTTGCGAAGACAAT
JMFS101G11+           CCCGCGGTAGTGGCGACCGGCGGTGGCTAGCGGCGACCGGTGATGTTTTGCGAAGACAAT
JMFS132F02+           CCCGCGGTAGTGGCGACCGGCGGTGGCTAGCGGCGACCGGTGATGTTTTGCGAAGACAAT
JMFS100C09+           CCCGCGGTAGTGGCGACCGGCGGTGGCTAGCGGCGACCGGTGATGTTTTGCGAAGACAAT
JMFS100C08+           CCCGCGGTAGTGGCGACCGGCGGTGGCTAGCGGCGACCGGTGATGTTTTGCGAAGACAAT
JMSF038D14+           CCCGCGGTAGTGGCGACCGGCGGTGGCTAGCGGCGACCGGTGATGTTTTGCGAAGACAAT
                      ____________________________________________________________
consensus             CCCGCGGTAGTGGCGACCGGCGGTGGCTAGCGGCGACCGGTGATGTTTTGCGAAGACAAT
 
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JMFS069C06+           GGCCGCGGTAATGGTGATCGACGA                                    
JMFS101G11+           GGCCGCGGTAATGGTGATCGACGACTC                                 
JMFS132F02+           GGCCGCGGTAATGGTGATCGACGACTCTC                               
JMFS100C09+           GGCCGCGGTAATGGTGATCGACGACTCTCACGGTAGTCTGCGGCCGATGGGGTCTC    
JMFS100C08+           GGCCGCGGTAATGGTGATCGACGACTCTCACGGTAGTCTGCGGCCGATGGGGTCTC    
JMSF038D14+           GGCCGCGGTAATGGTGATCGACGACTCTCACGGTAGTCTGCGGCCGATGGGGTCTCGTCC
                      ____________________________________________________________
consensus             GGCCGCGGTAATGGTGATCGACGACTCTCACGGTAGTCTGCGGCCGATGGGGTCTCGTCC