Contig 009473:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016B02Sequence548009473 (3)ref|XP_009772309.1|9e-48PREDICTED: glutamate receptor 3.6-like, partial [Nicotiana sylvestris]580004332 (2)ref|XP_009791964.1|1e-46PREDICTED: glutamate receptor 3.6-like [Nicotiana sylvestris]
JMSF033B07Sequence702009473 (3)ref|XP_009772309.1|6e-72PREDICTED: glutamate receptor 3.6-like, partial [Nicotiana sylvestris]
JMSF038B09Sequence593009473 (3)ref|XP_009772309.1|1e-60PREDICTED: glutamate receptor 3.6-like, partial [Nicotiana sylvestris]531004332 (2)gb|KJB17453.1|3e-27hypothetical protein B456_003G001400 [Gossypium raimondii] gb|KJB17454.1| hypoth

Alignment

This contig is upended


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JMSF033B07+                                                                GCGCTTT
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consensus                                                                  GCGCTTT
 
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JMSF033B07+           AAAAGTGATCCGACATTGCCTCATAGCCAGTTTATCTGCTAATGCAGCAATTCCACTCCT
                      ____________________________________________________________
consensus             AAAAGTGATCCGACATTGCCTCATAGCCAGTTTATCTGCTAATGCAGCAATTCCACTCCT
 
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JMSF033B07+           TCCATATTCATCATCTACATATATAGCAACCACTGCTTTCCANTGATAGAATTCAACAAT
                      ____________________________________________________________
consensus             TCCATATTCATCATCTACATATATAGCAACCACTGCTTTCCANTGATAGAATTCAACAAT
 
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JMSF033B07+           CGATGCTATAGCATCCATCTGAAACATATCATTTGGTGACGTCCTGACAAAGAATGGATA
JMSF016B02+                                                                     TA
                      ____________________________________________________________
consensus             CGATGCTATAGCATCCATCTGAAACATATCATTTGGTGACGTCCTGACAAAGAATGGATA
 
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JMSF033B07+           CTGAAGGGAAGTGAGAGCAGGATCGGTCGCAGAGAAAGACAATAGAGGGACATGGATCTT
JMSF016B02+           CTGAAGTGAAGTGAGAGCAGGATCGGTGGCAGAGAAAGACAATAGAGGGACATGGATCTC
JMSF038B09+                  GAAGTGAGAGCAGGATCGGTGGCAGAGAAAGACAATAGAGGGACATGGATCTC
                      ____________________________________________________________
consensus             CTGAAGTGAAGTGAGAGCAGGATCGGTGGCAGAGAAAGACAATAGAGGGACATGGATCTC
 
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JMSF033B07+           ATTTGCAATGTGGGAAATCACATGAGCTATGACTGAAGATTGGGGGCCAATTATGGCCA-
JMSF016B02+           ATTCGCAATGTGGGAAATCACATGAGCTATGACCGAAGATTGGGGGCCAATTATGGCCAC
JMSF038B09+           ATTCGCAATGTGGGAAATCACATGAGCTATGACCGAAGATTGGGGGCCAATTATGGCCAC
                      ____________________________________________________________
consensus             ATTCGCAATGTGGGAAATCACATGAGCTATGACCGAAGATTGGGGGCCAATTATGGCCAC
 
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JMSF033B07+           AGTGTCAGTCTCCAAGAAGCGTATAGCTTCAACTATCCCCATCAATCCACTAGAATTGTT
JMSF016B02+           GGTGTCAGTCTCCAAGAAGCGTATAGCTTCAACTATCCCCATCAATCCACTAGAATTGTT
JMSF038B09+           GGTGTCAGTCTCCAAGAAGCGTATAGCTTCAACTATCCCCATCAATCCANTAGAATTGTT
                      ____________________________________________________________
consensus             GGTGTCAGTCTCCAAGAAGCGTATAGCTTCAACTATCCCCATCAATCCACTAGAATTGTT
 
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JMSF033B07+           ATCAAGGATGGTGACAATC-AACTTTGTTCCTCCAAGAACAGCCCGATTAGAATTGATAT
JMSF016B02+           ATCGAGGATCGTGACATTCAAACTTTGTTCCTCCAAGAACAGCCGGATTAGAATTGATAT
JMSF038B09+           ATCGAGGATCGTGACATTC-AACTTNGTTCCTCCAAGAACAGCCGGATTAGAATTGATAT
                      ____________________________________________________________
consensus             ATCGAGGATCGTGACATTC-AACTTTGTTCCTCCAAGAACAGCCGGATTAGAATTGATAT
 
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JMSF033B07+           CTTCTACTGCAGTTTCTATTACCAATTTCGTAATTTTACCAACGTCAGACCTCAACGTGA
JMSF016B02+           CTTTTACTGCAGTTTCTATTACCAATTTCGTAATTTTACCAACGTCAGACCTCAACGTGA
JMSF038B09+           CTTTTACTGCAGTTTCTATTACCAATTTCGTAATTTTACCAACGTCAGACCTCAACGTGA
                      ____________________________________________________________
consensus             CTTTTACTGCAGTTTCTATTACCAATTTCGTAATTTTACCAACGTCAGACCTCAACGTGA
 
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JMSF033B07+           GAATACACCCAATGTTCACAACTTTAGGCCTTGCAGAAAGAGTTGAGTTAACCCCTT   
JMSF016B02+           GAATACACCCAATGTTCAAAACACTAGGCCTTGCAGAAAGAGTTGAGTTAACTCCTTCAC
JMSF038B09+           GAATACACCCAATGTTCAAAACACTAGGCCTTGCAGAAAGAGTTGAGTTAACTCCTTCAC
                      ____________________________________________________________
consensus             GAATACACCCAATGTTCAAAACACTAGGCCTTGCAGAAAGAGTTGAGTTAACTCCTTCAC
 
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JMSF016B02+           ACAAATACCCACAGTACAAAACTGGCAATATCAATGCCCAAAACAGTTTCATGATGAATT
JMSF038B09+           ACAAATACCCACAGTACAAAACTGGCAATATCAATGCCCAAAACAGTTTCATGATGAANT
                      ____________________________________________________________
consensus             ACAAATACCCACAGTACAAAACTGGCAATATCAATGCCCAAAACAGTTTCATGATGAATT
 
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JMSF016B02+           GAGTTATCAAAACCCCAGATTCCACCCTATCTACACAGCACTGGGAGAGTTTTAAAGACT
JMSF038B09+           GAGTTATCAAAACCCCAGATTCCACCCTATCTACACAGCACTGGGAGAGTTTTAAAGACT
                      ____________________________________________________________
consensus             GAGTTATCAAAACCCCAGATTCCACCCTATCTACACAGCACTGGGAGAGTTTTAAAGACT
 
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JMSF016B02+           TCTCATAATTCAACAATGAGTGAAAGAAAAGAAAGGCATATTCTCTGTATTCAATAGAGC
JMSF038B09+           TNTCATAATTCAACAATGAGTGAAAGAAAAGAAAGGCATATTCTCTGTATTCAATAGAGC
                      ____________________________________________________________
consensus             TCTCATAATTCAACAATGAGTGAAAGAAAAGAAAGGCATATTCTCTGTATTCAATAGAGC
 
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JMSF016B02+           AGAC                                                        
JMSF038B09+           AGACAAAAGTACTTAATAGTTGTAGAATACCAGAAATGAAAGGTTTAAAGCTCAAAACTC
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consensus             AGACAAAAGTACTTAATAGTTGTAGAATACCAGAAATGAAAGGTTTAAAGCTCAAAACTC