Contig 009467:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027E10Sequence531006031 (3)ref|XP_004236745.1|1e-42PREDICTED: protein kinase APK1A, chloroplastic [Solanum lycopersicum]466009467 (7)
JMFF035P03Sequence527006031 (3)gb|AIU96237.1|1e-07serine/threonine-protein kinase BIK1, partial [Nicotiana benthamiana]632009467 (7)ref|XP_009759469.1|1e-26PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris]
JMFF051M11Sequence648006031 (3)ref|XP_004236745.1|1e-65PREDICTED: protein kinase APK1A, chloroplastic [Solanum lycopersicum]381009467 (7)
JMFS060A01Sequence629009467 (7)gb|EYU33216.1|3e-131hypothetical protein MIMGU_mgv1a011111mg [Erythranthe guttata]
JMSF012A20Sequence250009467 (7)gb|AIU96237.1|4e-08serine/threonine-protein kinase BIK1, partial [Nicotiana benthamiana]785012699 (3)ref|XP_009759469.1|7e-70PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris]
JMSF037H23Sequence649009467 (7)ref|XP_009759469.1|1e-93PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris]576012699 (3)emb|CDP00097.1|2e-16unnamed protein product [Coffea canephora]
JMSF038H23Sequence679009467 (7)ref|XP_004236745.1|1e-101PREDICTED: protein kinase APK1A, chloroplastic [Solanum lycopersicum]869012699 (3)ref|XP_009759469.1|2e-68PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF051M11- CCTTATGGCGGATCACCCTGGAGAG
                      ____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAG
 
. : . : . : . : . : . :
rJMFF051M11- TTTTTTTTTTTTTTCTTTTTTTTTTTTTTTAAAACATCGAACTCTTTTTTACTTTTTTTT
                      ____________________________________________________________
consensus TTTTTTTTTTTTTTCTTTTTTTTTTTTTTTAAAACATCGAACTCTTTTTTACTTTTTTTT
 
. : . : . : . : . : . :
rJMFF051M11- TTTGGGGTGCACAAAATACAGCAAAGAACTGTACAAAACTAACGGTAGATTAGTCTAATA
rJMFF035P03- AAACTAACGGTAGATTAGTCTAATA
                      ____________________________________________________________
consensus TTTGGGGTGCACAAAATACAGCAAAGAACTGTACAAAACTAACGGTAGATTAGTCTAATA
 
. : . : . : . : . : . :
rJMFF051M11- CAGGTCCAAGATCCTGAAATGATAAACTGTGGGCATGTTCTTCTCTATAAGCTAATGTAT
rJMFF027E10- GGTCCAAAATCCTGAAATGANAAANTGNGGGCATGTTCTTCTCTATAANCTAATGNAT
rJMFF035P03- CAGGTCCAAGATCCTGAAATGATAAACTGTGGGCATGTTCTTCTCTATAAGCTAATGTAT
                      ____________________________________________________________
consensus CAGGTCCAAGATCCTGAAATGATAAACTGTGGGCATGTTCTTCTCTATAAGCTAATGTAT
 
. : . : . : . : . : . :
rJMFF051M11- ACAGTATAATAAGATGTGTTGATTCTCAGTGTTCATGCAACAATGGCAAAAGCAGAGGTT
rJMFF027E10- ACAGNATAATAAAATGNGTTNATTCTCAGGGTTCNTGCAACAANGGCAAAANCAAAGGTT
rJMFF035P03- ACAGTATAATAAGATGTGTTGATTCTCAGTGTTCATGCAACAATGGCAGAAGCAGAGGTT
                      ____________________________________________________________
consensus ACAGTATAATAAGATGTGTTGATTCTCAGTGTTCATGCAACAATGGCAAAAGCAGAGGTT
 
. : . : . : . : . : . :
rJMFF051M11- GTTGCACAAGCAGCATTGTTTCCTCTTGAAGCTTCTTCAATGGCGCAGGATCTCTGAGGG
rJMFF027E10- GTTGCNCAANCANCATTGTTNCCTCTTNAANNTTCTTCAANGGCNCAGGATCTCTGAGGG
rJMFF035P03- GTTGCACAAGCAGCATTGTTTCCTCTTGAAGCTTCTTCAATGGCGCAGGATCTCTGAGGG
                      ____________________________________________________________
consensus GTTGCACAAGCAGCATTGTTTCCTCTTGAAGCTTCTTCAATGGCGCAGGATCTCTGAGGG
 
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rJMFF051M11- TTCTCGATCGCTTCCTGTTTGAGATTCTCTATGCTGCCATTCGAGTCTTCCTTGTT
rJMFF027E10- TTCTCAATCNCTTCCNGTTTNAAATTCTCNATGCTGCCATTCAAGTCTTCCTTGTTTCNA
rJMFF035P03- TTCTCGATCGCTTCCTGTTTGAGATTCTCTATGCTGCCATTCGAGTCTTCCTTGTTTCTA
                      ____________________________________________________________
consensus TTCTCGATCGCTTCCTGTTTGAGATTCTCTATGCTGCCATTCGAGTCTTCCTTGTTTCTA
 
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rJMFF027E10- CTCAAANCTTCTTCAANGGCNCGGNATCTCNGGGGATTCNCAATCACTTCCTGTTTNAAA
rJMFF035P03- CTCGAAGCTTCTTCAATGGCGCGGGATCTCTGGTGATTCTCGATCACTTCCTGTTTGAGA
                      ____________________________________________________________
consensus CTCGAAGCTTCTTCAATGGCGCGGGATCTCTGGTGATTCTCGATCACTTCCTGTTTGAGA
 
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rJMFF027E10- CTCTCTGNGCTGCCATTCCTTGAANCTTCTTCAANGGCNCGGNATCTCTGANGGTTCTTG
rJMFF035P03- CTCTCTGTGCTGCCATTCCTTGAAGCTTCTTCAATGGCGCGGGATCTCTGATGGTTCTTG
                      ____________________________________________________________
consensus CTCTCTGTGCTGCCATTCCTTGAAGCTTCTTCAATGGCGCGGGATCTCTGATGGTTCTTG
 
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rJMFF027E10- ATCNCTTCCTGTTNGGNACTCCCTGNGCTGCTGCCATTCNAGTCTTGAANNTTTTCAAGC
rJMFF035P03- ATCGCTTCCTGTTTGGGACTCGCTGTGCTGCTGCCATTCGAGTCTTGAAGCTTTTCAAGC
                      ____________________________________________________________
consensus ATCGCTTCCTGTTTGGGACTCGCTGTGCTGCTGCCATTCGAGTCTTGAAGCTTTTCAAGC
 
. : . : . : . : . : . :
rJMFF027E10- TCCNCTACCACCTCGTTCATGTCAGGCCTTGATTTGGGGNCGGG
rJMFF035P03- TCCGCTACCACCTCGTTCATGTCAGGCCTTGATTTGGGGTCGGGCGTTATGCATTTCACT
JMFS060A01+ TTGGGGTCGGGCGTTATGCATTTCACT
                      ____________________________________________________________
consensus TCCGCTACCACCTCGTTCATGTCAGGCCTTGATTTGGGGTCGGGCGTTATGCATTTCACT
 
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rJMFF035P03- GCGAGGAGTGCTACTCGGAGCGCTCCACTCAACGAGTACTGCCCTTGGATACGAGGATCC
JMFS060A01+ GCGAGGAGTGCTACTCGGAGCGCTCCACTCAACGAGTACTGCCCTTGGATACGAGGATCC
                      ____________________________________________________________
consensus GCGAGGAGTGCTACTCGGAGCGCTCCACTCAACGAGTACTGCCCTTGGATACGAGGATCC
 
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rJMFF035P03- ATGACTCGGAGGATTTTGCGGTTGCTGGCGAGGTAAGGCTTAGCCCAGTCAATGAGGTTT
JMFS060A01+ ATGACTCGGAGGATTTTGCGGTTGCTGGCGAGGTAAGGCTTAGCCCAGTCAATGAGGTTT
                      ____________________________________________________________
consensus ATGACTCGGAGGATTTTGCGGTTGCTGGCGAGGTAAGGCTTAGCCCAGTCAATGAGGTTT
 
. : . : . : . : . : . :
rJMFF035P03- TGTTCCC
JMFS060A01+ TGTTCCCCATTGGGTCGGTTTGTGTCCACTACTCGACGGCCCGTCAGCATTTCTAGAAGC
                      ____________________________________________________________
consensus TGTTCCCCATTGGGTCGGTTTGTGTCCACTACTCGACGGCCCGTCAGCATTTCTAGAAGC
 
. : . : . : . : . : . :
JMFS060A01+ ACGACCCCGAAACTATACACATCGCTACTTGGAGTCAAGTGACCTGTGGCCATATACTCG
                      ____________________________________________________________
consensus ACGACCCCGAAACTATACACATCGCTACTTGGAGTCAAGTGACCTGTGGCCATATACTCG
 
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JMFS060A01+ GGAGCTGCATAGCCATATGTACCCATAATTCTCGTAGAGACGTGACTTTCTCCTTCGATA
                      ____________________________________________________________
consensus GGAGCTGCATAGCCATATGTACCCATAATTCTCGTAGAGACGTGACTTTCTCCTTCGATA
 
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JMFS060A01+ GGCCCATCCTTAGCCAATCCAAAATCAGAAAGTTTTGCGTTGTAGTTAGAGTCGATCAAA
                      ____________________________________________________________
consensus GGCCCATCCTTAGCCAATCCAAAATCAGAAAGTTTTGCGTTGTAGTTAGAGTCGATCAAA
 
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JMFS060A01+ ACGTTAGACGATTTGAAATCACGATATATAACTTTTGCCTCGGGGCCGTGAAGATATGCA
                      ____________________________________________________________
consensus ACGTTAGACGATTTGAAATCACGATATATAACTTTTGCCTCGGGGCCGTGAAGATATGCA
 
. : . : . : . : . : . :
JMFS060A01+ AGTCCCTTGGCTGCGCCAAGAGCAACCTTCATTCTAAGATTCCAAGATAGCGGTTGAAAG
JMSF038H23+ CCAAGATAGTGGTTGAAAG
                      ____________________________________________________________
consensus AGTCCCTTGGCTGCGCCAAGAGCAACCTTCATTCTAAGATTCCAAGATAGTGGTTGAAAG
 
. : . : . : . : . : . :
JMFS060A01+ TAAGAACTCCTTCTGAACAGATGATTCTCCAAACTTCCCCGAGGCATGAACTCATACACC
JMSF038H23+ TAAGAACTCCTTCTGAATAGATGATTTTCCAAACTTCCACGAGGCATGAATTCATACACC
JMSF037H23+ TCTGAATAGATGATTTTCCAAACTTCCACGAGGCATGAATTCATACACC
                      ____________________________________________________________
consensus TAAGAACTCCTTCTGAATAGATGATTTTCCAAACTTCCACGAGGCATGAATTCATACACC
 
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JMFS060A01+ AGAATTCGGTGGTCATCCTCTAAGCAGTAACCTATCAACTTCACGAGATTGGGATG
JMSF038H23+ AGAAGCCTGTGTTCATCCTCCAAGCAGTAGCCAATCAATTTTACGAGATTAGGATGAGAT
JMSF037H23+ AGAAGCCTGTGTTCATCCTCCAAGCAGTAGCCAATCAATTTTACGAGATTAGGATGAGAT
                      ____________________________________________________________
consensus AGAAGCCTGTGTTCATCCTCCAAGCAGTAGCCAATCAATTTTACGAGATTAGGATGAGAT
 
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JMSF038H23+ AGCTGCCCCAGATAAGTGATTTCTGCCAGCCATTCCTTATGACCTTGGAAACCTTCTTGA
JMSF037H23+ AGCTGCCCCAGATAAGTGATTTCTGCCAGCCATTCCTTATGACCTTGGAAACCTTCTTGA
                      ____________________________________________________________
consensus AGCTGCCCCAGATAAGTGATTTCTGCCAGCCATTCCTTATGACCTTGGAAACCTTCTTGA
 
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JMSF038H23+ TTCAGTCTCTTTGCAGCAATAACCAACCCAGTACCGGGCCTAGCTGCCTTAAAGGTGTTC
JMSF037H23+ TTCAGTCTCTTTGCAGCAATAACCAACCCAGTACCGGGCCTAGCTGCCTTAAAGGTGTTC
                      ____________________________________________________________
consensus TTCAGTCTCTTTGCAGCAATAACCAACCCAGTACCGGGCCTAGCTGCCTTAAAGGTGTTC
 
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JMSF038H23+ TCGTCAACCCATCCCTTAAAGACGCAACCAAAACCGCCTTCACCCAACACACTATCGGGC
JMSF037H23+ TCGTCAACCCATCCCTTAAAGACGCAACCAAAACCGCCTTCACCCAACACACTATCGGGC
                      ____________________________________________________________
consensus TCGTCAACCCATCCCTTAAAGACGCAACCAAAACCGCCTTCACCCAACACACTATCGGGC
 
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JMSF038H23+ CGGAAGTTTCGAGTGGCTATTCTGAGTTCATTAAAAGTGAAACCCTTGAGATTCGACGAC
JMSF012A20+ GAC
JMSF037H23+ CGGAAGTTTCGAGTGGCTATTCTGAGTTCATTAAAAGTGAAACCCTTGAGATTCGACGAC
                      ____________________________________________________________
consensus CGGAAGTTTCGAGTGGCTATTCTGAGTTCATTAAAAGTGAAACCCTTGAGATTCGACGAC
 
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JMSF038H23+ TCCAAAATTTCACTCTCACTCCGAGGGGTCAATGGCACCGAGGGCGATGAAAGCCTGTTA
JMSF012A20+ TCCAAAATTTCACTCTCACTCCGAGGGGTCAATGGCACCGAGGGCGATGAAAGCCTGTTA
JMSF037H23+ TCCAAAATTTCACTCTCACTCCGAGGGGTCAATGGCACCGAGGGCGATGAAAGCCTGTTA
                      ____________________________________________________________
consensus TCCAAAATTTCACTCTCACTCCGAGGGGTCAATGGCACCGAGGGCGATGAAAGCCTGTTA
 
. : . : . : . : . : . :
JMSF038H23+ CTTAAACCACCTGCCCCAGCATGAAGGGGACTCTCTGCCTTAATCCTGGCACTGCAAGAA
JMSF012A20+ CTTAAACCACCTGCCCCAGCATGAAGGGGACTCTCTGCCTTAATCCTGGCACTGCAAGAA
JMSF037H23+ CTTAAACCACCTGCCCCAGCATGAAGGGGACTCTCTGCCTTAATCCTGGCACTGCAAGAA
                      ____________________________________________________________
consensus CTTAAACCACCTGCCCCAGCATGAAGGGGACTCTCTGCCTTAATCCTGGCACTGCAAGAA
 
. : . : . : . : . : . :
JMSF038H23+ GACCCCATAAATTAAACCCACCAAAGCTTCAATCTTTTCTGTTCCTCCTTCAAGAAAATG
JMSF012A20+ GACCCCATAAATTAAACCCACCAAAGCTTCAATCTTTTCTGTTCCTCCTTCAAGAAAATG
JMSF037H23+ GACCCCATAAATTAAACCCACCAAAGCTTCAATCTTTTCTGTTCCTCCTTCAAGAAAATG
                      ____________________________________________________________
consensus GACCCCATAAATTAAACCCACCAAAGCTTCAATCTTTTCTGTTCCTCCTTCAAGAAAATG
 
. : . : . : . : . : . :
JMSF038H23+ GCCTCTCTCTCTCTCTGTCTCTCTCACAGAGGCCCTATAAAATAGTGGAAGTTCTTGAAG
JMSF012A20+ GCCTCTCTCTCTCTCTGTCTCTCTCACAGAGGCCCTATAAAATAGTGGAAGTTCTTGAAG
JMSF037H23+ GCCTCTCTCTCTCTCTGTCTCTCTCACAGAGGCCCTATAAAATAGTGGAAGTTCTTGAAG
                      ____________________________________________________________
consensus GCCTCTCTCTCTCTCTGTCTCTCTCACAGAGGCCCTATAAAATAGTGGAAGTTCTTGAAG
 
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JMSF038H23+ GATTCTTTACATCCAGAAAAGGGGAAAAAATAAATAAGCCCACAACCAACCACCTTAACC
JMSF012A20+ GATTCT
JMSF037H23+ GATTCTTTACATCCAGAAAAGGGGAAAAAATAAATAAGCCCACAACCAACCACCTTAACC
                      ____________________________________________________________
consensus GATTCTTTACATCCAGAAAAGGGGAAAAAATAAATAAGCCCACAACCAACCACCTTAACC