Contig 009462:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS036C10Sequence434009462 (3)ref|XP_009784922.1|5e-24PREDICTED: uncharacterized protein At1g04910 isoform X1 [Nicotiana sylvestris]
JMFS036D01Sequence562009462 (3)ref|XP_009784922.1|1e-22PREDICTED: uncharacterized protein At1g04910 isoform X1 [Nicotiana sylvestris]
JMSF037C14Sequence245009462 (3)724009028 (3)gb|KCW79414.1|8e-55hypothetical protein EUGRSUZ_C00818 [Eucalyptus grandis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036D01+                                                                   CCCT
                      ____________________________________________________________
consensus                                                                     CCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036C10+                                        ACGCCCAAAGATCCAGTCTTTCTCCTTAAAT
JMFS036D01+           TGAGCTCCAATCCACCCAACCCCAAGTCCACGCCCAAAGATCCAGTCTTTCTCCTTAAAT
                      ____________________________________________________________
consensus             TGAGCTCCAATCCACCCAACCCCAAGTCCACGCCCAAAGATCCAGTCTTTCTCCTTAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036C10+           ACACTCTCTGGATCACACTACTCAAGTGGGTCTGAGCTTGCCTCTTCTCCACCATCTGCT
JMFS036D01+           ACACTCTCTGGATCACACTACTCAAGTGGGTCTGAGCTTGCCTCTTCTCCACCATCTGCT
                      ____________________________________________________________
consensus             ACACTCTCTGGATCACACTACTCAAGTGGGTCTGAGCTTGCCTCTTCTCCACCATCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036C10+           CGAACCCATCGCCGGAAACGGGGCTGGCATTCCCCTCAGATCTAGGCGAGTTGAGGTTGA
JMFS036D01+           CGAACCCATCGCCGGAAACGGGGCTGGCATTCCCCTCAGATCTAGGCGAGTTGAGGTTGA
                      ____________________________________________________________
consensus             CGAACCCATCGCCGGAAACGGGGCTGGCATTCCCCTCAGATCTAGGCGAGTTGAGGTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036C10+           GGTCAATCTCGTGGTGGGTGTTGAGCGAGGCAGAAGTATTGCCAGTGCTGTGAGAGGTCT
JMFS036D01+           GGTCAATCTCGTGGTGGGTGTTGAGCGAGGCAGAAGTATTGCCAGTGCTGTGAGAGGTCT
                      ____________________________________________________________
consensus             GGTCAATCTCGTGGTGGGTGTTGAGCGAGGCAGAAGTATTGCCAGTGCTGTGAGAGGTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036C10+           GATTGACGGCGGCGCCAGTGTTGTTGGAACGCTTGAAGGAGTGGGCTCGCCGGGTCATCG
JMFS036D01+           GATTGACGGCGGCGCCAGTGTTGTTGGAACGCTTGAAGGAGTGGGCTCGCCGGGTCATCG
                      ____________________________________________________________
consensus             GATTGACGGCGGCGCCAGTGTTGTTGGAACGCTTGAAGGAGTGGGCTCGCCGGGTCATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036C10+           AGGCCGCCGAGAATCTCGGGCTGTTGACCCGCGGCGAAACGCCATCCGTCGCCGTCGTGT
JMFS036D01+           AGGCCGCCGAGAATCTCGGGCTGTTGACCCGCGGCGAAACGCCATCCGTCGCCGTCGTGT
JMSF037C14+                                                                  CGTGT
                      ____________________________________________________________
consensus             AGGCCGCCGAGAATCTCGGGCTGTTGACCCGCGGCGAAACGCCATCCGTCGCCGTCGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036C10+           GGTGGTGGTTGTTATGGTGGTGGCCCATGTCCCAGTATATACATATGTATGTATATATAT
JMFS036D01+           GGTGGTGGTTGTTATGGTGGTGGCCCATGTCCCAGTATATACATATGTATGTATATATAT
JMSF037C14+           GGTGGTGGTTGTTATGGTGGTGGCCCATGTCCCAGTATATACATATGTATGTATATATAT
                      ____________________________________________________________
consensus             GGTGGTGGTTGTTATGGTGGTGGCCCATGTCCCAGTATATACATATGTATGTATATATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036C10+           ACCTCTCTCTCTCTTCTATATGTATTGATCA                             
JMFS036D01+           ACCTCTCTCTCTCTTCTATATGTATTGATCAGCTGTGCCGTGAGCAAGGGGGTGGTGGAG
JMSF037C14+           ACCTCTCTCTCTCTTNTATATGTATTGATCAGCNGTGCCGTGAGCAAGGGGGTGGTGGAG
                      ____________________________________________________________
consensus             ACCTCTCTCTCTCTTCTATATGTATTGATCAGCTGTGCCGTGAGCAAGGGGGTGGTGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036D01+           TTATGAAGAAATGATTGACATTAATGTCGGAAGATGGGCTGCCGATGGCAAAGCGAAAAG
JMSF037C14+           TTATGAAGAAANGATTGACATTAATGTCGGAAGATGGGCTGCCGATGGCAAAGCGAAAAG
                      ____________________________________________________________
consensus             TTATGAAGAAATGATTGACATTAATGTCGGAAGATGGGCTGCCGATGGCAAAGCGAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS036D01+           ATGAGAGAGAGAGAGAGA                                          
JMSF037C14+           ATGAGAGAGAGAGAGAGAGAGACTATGGTCTGAAAACAAAGAAAAATGGGGACGGAACTC
                      ____________________________________________________________
consensus             ATGAGAGAGAGAGAGAGAGAGACTATGGTCTGAAAACAAAGAAAAATGGGGACGGAACTC