| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN006D16 | Sequence | 639 | 009458 (6) | ref|XP_006370167.1| | 3e-106 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 | |||||
| JMSF007L12 | Sequence | 330 | 009458 (6) | ref|XP_007133200.1| | 3e-54 | hypothetical protein PHAVU_011G160100g [Phaseolus vulgaris] gb|ESW05194.1| hypot | 647 | 009458 (6) | ref|XP_007021721.1| | 2e-107 | Ubiquitin-conjugating enzyme 36 isoform 1 [Theobroma cacao] gb|EOY13246.1| Ubiqu |
| JMSF008P08 | Sequence | 765 | 009458 (6) | ref|XP_006370167.1| | 1e-105 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 | |||||
| JMSF036L05 | Sequence | 644 | 009458 (6) | ref|XP_007021721.1| | 5e-106 | Ubiquitin-conjugating enzyme 36 isoform 1 [Theobroma cacao] gb|EOY13246.1| Ubiqu | 705 | 009458 (6) | ref|XP_006370167.1| | 3e-96 | ubiquitin-conjugating enzyme family protein [Populus trichocarpa] ref|XP_0100606 |
This contig is upended
. : . : . : . : . : . :
rJMSF036L05- ATATCATCATTACAAATT
rJMSF008P08- TATATCATCATTACAAATT
____________________________________________________________
consensus TATATCATCATTACAAATT
. : . : . : . : . : . :
rJMSF036L05- TAACAAAGGACTCACCGGCCGGAAAATGGACGCATTTCAAGGGTCCGTAACCCTTGGTGA
rJMSF008P08- TAACAAAGGACTCACCGGCCGGAAAATAGACGCATTTCAAGGGTCCGTAACCCTTGGTGA
____________________________________________________________
consensus TAACAAAGGACTCACCGGCCGGAAAATGGACGCATTTCAAGGGTCCGTAACCCTTGGTGA
. : . : . : . : . : . :
rJMSF036L05- GCCTTTATATTATAGTTGATACAATAAAATTTCGAGGGTTGGGGAAACAATTATCTAGCA
rJMSF008P08- GCCTTTATATTATAGTTGATACAATAAAATTTCGAGGGTTGGGGAAACAATTATCTAGCA
____________________________________________________________
consensus GCCTTTATATTATAGTTGATACAATAAAATTTCGAGGGTTGGGGAAACAATTATCTAGCA
. : . : . : . : . : . :
rJMSF036L05- GTAACTTGAATGACTAAATAGTTCAAACAATAATTCTGGTTTGTTCCAAACATGATCACT
rJMSF008P08- GTAACTTGAATGACTAAATAGTTCAAACAATAATTCTGGTTTGTTCCAAACATGATCACT
____________________________________________________________
consensus GTAACTTGAATGACTAAATAGTTCAAACAATAATTCTGGTTTGTTCCAAACATGATCACT
. : . : . : . : . : . :
rJMSF036L05- TCTTGGCACCCCATTTTAATTCAACAGTTAATAGAGTACATTGCACATTTTGTTATTTCA
rJMSF008P08- TCTTGGCACCCCATTTTAATTCAACAGTTAATAGAGTACATTGCACATTTTGTTATTTCA
JMSF036L05+ TAATTCAACAGTTAATAGAGTACATTGCACATTTTGTTATTTCA
____________________________________________________________
consensus TCTTGGCACCCCATTTTAATTCAACAGTTAATAGAGTACATTGCACATTTTGTTATTTCA
. : . : . : . : . : . :
rJMSF036L05- AAGTGCTTCGTCGGCAGAGTTCAAGCACCACTAGCATAAAGGCGAGTCCATTCTTTTGCT
rJMSF008P08- AAGTGCTTCGTCGGCAGAGTTCAAGCACCACTAGCATAAAGGCGAGTCCATTCTTTTGCT
rJMSF007L12- GTCCATTCTTTTGCT
JMFN006D16+ TTCAAGCACCACTAGCATAAAGGCGAGTCCATTCTTTTGCT
JMSF036L05+ AAGTGCTTCGTCGGCAGAGTTCAAGCACCACTAGCATAAAGGCGAGTCCATTCTTTTGCT
____________________________________________________________
consensus AAGTGCTTCGTCGGCAGAGTTCAAGCACCACTAGCATAAAGGCGAGTCCATTCTTTTGCT
. : . : . : . : . : . :
rJMSF036L05- GTTTCAACAGCTTCAACCTCATTTGTCTTCCAATGTTTTGCAATGTTTTCAGAAAGTGGA
rJMSF008P08- GTTTCAACAGCTTCAACCTCATTTGTCTTCCAATGTTTTGCAATGTTTTCAGAAAGTGGA
rJMSF007L12- GTTTCAACAGCTTCAGCCTCATTTGTCTTCCAATGTTTTGCAATGTTCTCGGAGAGTGGA
JMFN006D16+ GTTTCAACAGCTTCAACCTCATTTGTCTTCCAATGTTTTGCAATGTTTTCAGAAAGTGGA
JMSF036L05+ GTTTCAACAGCTTCAACCTCATTTGTCTTCCAATGTTTTGCAATGTTTTCAGAAAGTGGA
____________________________________________________________
consensus GTTTCAACAGCTTCAACCTCATTTGTCTTCCAATGTTTTGCAATGTTTTCAGAAAGTGGA
. : . : . : . : . : . :
rJMSF036L05- TCATCTGGATTTGGAGCACTCAAAAGTGCTTGAATGCTCAAAAGTACAGTACGAATCTGA
rJMSF008P08- TCATCTGGATTTGGAGCACTCAAAAGTGCTTGAATGCTCAAAAGTACAGTACGAATCTGA
rJMSF007L12- TCGTCAGGATTTGGAGCACTCAAAAGTGCTTGAATACTCAAAAGTACTGTACGAATCTGA
JMFN006D16+ TCATCTGGATTTGGAGCACTCAAAAGTGCTTGAATGCTCAAAAGTACAGTACGAATCTGA
JMSF036L05+ TCATCTGGATTTGGAGCACTCAAAAGTGCTTGAATGCTCAAAAGTACAGTACGAATCTGA
____________________________________________________________
consensus TCATCTGGATTTGGAGCACTCAAAAGTGCTTGAATGCTCAAAAGTACAGTACGAATCTGA
. : . : . : . : . : . :
rJMSF036L05- AGAGCAGGACTCCACTTGTCTTTGAGAATATCAAGACAGATCCTTCCAAGCTTATCAATG
rJMSF008P08- AGAGCAGGACTCCACTTGTCTTTGAGAATATCAAGACAGATCCTTCCAAGCTTATCAATG
JMSF007L12+ GCTTATCAATG
rJMSF007L12- AGAGCAGGACTCCATTTGTCTTTAAGTATATCAAGACATATCCTCCCAAGCTTATCAATG
JMFN006D16+ AGAGCAGGACTCCACTTGTCTTTGAGAATATCAAGACAGATCCTTCCAAGCTTATCAATG
JMSF036L05+ AGAGCAGGACTCCACTTGTCTTTGAGAATATCAAGACAGATCCTTCCAAGCTTATCAATG
____________________________________________________________
consensus AGAGCAGGACTCCACTTGTCTTTGAGAATATCAAGACAGATCCTTCCAAGCTTATCAATG
. : . : . : . : . : . :
rJMSF036L05- TTAGGGTGGTAGATTTTGGTGAGGAACCGAACCTTTGGAGCAGCCATTGGGTACTCTTCA
rJMSF008P08- TTAGGGTGGTAGATTTTGGTGAGGAACCGAACCTTTGGAGCAGCCATTGGGTACTCTTCA
JMSF007L12+ TTCGGATGATAGATTTTGGTGAGGAACCGAACCTTTGGAGCAGCCATTGGATATTCTTCA
rJMSF007L12- TTCGGATGATAGATTTTGGTGAGGAACCGAACCTTTGGAGCAGCCATTGGATATTCTTCA
JMFN006D16+ TTAGGGTGGTAGATTTTGGTGAGGAACCGAACCTTTGGAGCAGCCATTGGGTACTCTTCA
JMSF036L05+ TTAGGGTGGTAGATTTTGGTGAGGAACCGAACCTTTGGAGCAGCCATTGGGTACTCTTCA
____________________________________________________________
consensus TTAGGGTGGTAGATTTTGGTGAGGAACCGAACCTTTGGAGCAGCCATTGGGTACTCTTCA
. : . : . : . : . : . :
rJMSF036L05- GGCAAAAACAATTCCAGCTTGAAAACACCACCTTCATAAGGAGACTGTGACGGACCAAGA
rJMSF008P08- GGCAAAAACAATTCCAGCTTGAAAACACCACCTTCATAAGGAGACTGTGACGGACCAAGA
JMSF007L12+ GGCAAAAACAATTCCAGTTTGAAAACACCTCCTTCATAAGGAGACTGTGTTGGACCAAGA
rJMSF007L12- GGCAAAAACAATTCCAGTTTGAAAACACCTCCTTCATAAGGAGACTGTGTTGGACCAAGA
JMFN006D16+ GGCAAAAACAATTCCAGCTTGAAAACACCACCTTCATAAGGAGACTGTGACGGACCAAGA
JMSF036L05+ GGCAAAAACAATTCCAGCTTGAAAACACCACCTTCATAAGGAGACTGTGACGGACCAAGA
____________________________________________________________
consensus GGCAAAAACAATTCCAGCTTGAAAACACCACCTTCATAAGGAGACTGTGACGGACCAAGA
. : . : . : . : . : . :
rJMSF036L05- ATCATCACATTAAAATACCGCATATTGTCTTCTGATGGAGATGCACTTATTCCCGGGGCT
rJMSF008P08- ATCATCACATTAAAATACCGCATATTGTCTTCTGATGGAGATGCACTTATTCCCGGGGCT
JMSF007L12+ ATCATGACATTAAAATAACGCATATTGTCCTCTGATGGAGATGCACTTATTCCTGGTGCT
rJMSF007L12- ATCATGACATTAAAATAACGCATATTGTCCTCTGATGGAGATGCACTTATTCCTGGTGCT
JMFN006D16+ ATCATCACATTAAAATACCGCATATTGTCTTCTGATGGAGATGCACTTATTCCCGGGGCT
JMSF036L05+ ATCATCACATTAAAATACCGCATATTGTCTTCTGATGGAGATGCACTTATTCCCGGGGCT
____________________________________________________________
consensus ATCATCACATTAAAATACCGCATATTGTCTTCTGATGGAGATGCACTTATTCCCGGGGCT
. : . : . : . : . : . :
rJMSF036L05- GGTTCGCTAAGGAGCCGCTGTGTTTCC
rJMSF008P08- GGTTCGCTAAGGAGCCGCTGTGTTTCCTTGATGATTCTCCGAGGGAGATTGCTGTTAGCC
JMSF007L12+ GGTTCGCTGAGAAGACGTTGAGTTTCCTTGATGATTCTTCGGGGGAGATTGCTGTTCGCC
rJMSF007L12- GGTTCGCTGAGAAGACGTTGAGTTTCCTTGATGATTCTTCGGGGGAGATTGCTGTTCGCC
JMFN006D16+ GGTTCGCTAAGGAGCCGCTGTGTTTCCTTGATGATTCTTCGAGGGAGATTGCTGTTAGCC
JMSF036L05+ GGTTCGCTAAGGAGCCGCTGTGTTTCCTTGATGATTCTTCGAGGGAGATTGCTGTTAGCC
____________________________________________________________
consensus GGTTCGCTAAGGAGCCGCTGTGTTTCCTTGATGATTCTTCGAGGGAGATTGCTGTTAGCC
. : . : . : . : . : . :
rJMSF008P08- ATTGAA
JMSF007L12+ ATTGA
rJMSF007L12- ATTGA
JMFN006D16+ ATTGAA
JMSF036L05+ ATTGAAATTGAATTGAGTTGAAGTGAATCGCAAGATTCTTTGGGTCGGAACGTTTACGCA
____________________________________________________________
consensus ATTGAAATTGAATTGAGTTGAAGTGAATCGCAAGATTCTTTGGGTCGGAACGTTTACGCA
. : . : . : . : . : . :
JMSF036L05+ AGCGGAATGAAGAAGAAGTTGAGAATTGGAGACTTACCAAAGGGTTTGATTGAAACTTTC
____________________________________________________________
consensus AGCGGAATGAAGAAGAAGTTGAGAATTGGAGACTTACCAAAGGGTTTGATTGAAACTTTC