Contig 009456:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS025A03+                                                GTGGAGAATATAGCTGACCATCT
                      ____________________________________________________________
consensus                                                  GTGGAGAATATAGCTGACCATCT
 
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JMFS025A03+           ATCATTATGGGGGACAGAGGACCACCGATAGGGGAGAACTGCCCATATGCCATTTGGGCA
JMFS036E03+                TATGGGGGACAGAGGACCACCGATAGGGGAGAACTGCCCATATGCCATTTGGGCA
                      ____________________________________________________________
consensus             ATCATTATGGGGGACAGAGGACCACCGATAGGGGAGAACTGCCCATATGCCATTTGGGCA
 
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JMFS025A03+           TCATAACCATAACTAGGGGGGAAAAAGAGTGATGGATTCCCATCATTGTACATTGCAGGA
JMFS036E03+           TCATAACCATAACTAGGGGGGAAAAAGAGTGATGGATTCCCATCATTGTACATTGCAGGA
JMSF036E10+                                  AAAGAGTGATGGANTCCCATCATTGTACATTGCAGGA
                      ____________________________________________________________
consensus             TCATAACCATAACTAGGGGGGAAAAAGAGTGATGGATTCCCATCATTGTACATTGCAGGA
 
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JMFS025A03+           GGTACAACATGCAAGTTGTTTGCATTCACTTCATTAGAGTGTTCAGCCCAATTTCCTGAG
JMFS036E03+           GGTACAACATGCAAGTTGTTTGCATTCACTTCATTAGAGTGTTCAGCCCAATTTCCTGAG
JMSF036E10+           GGTACAACATGCAAGTTGTTTGCATTCACTTCATTAGAGTGTTCAGCCCAATTTCCTGAG
                      ____________________________________________________________
consensus             GGTACAACATGCAAGTTGTTTGCATTCACTTCATTAGAGTGTTCAGCCCAATTTCCTGAG
 
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JMFS025A03+           CCATTGTCATAACCTCCATAATAAAAACCTTGCTCCAGTGGAGTATAAGAATTGGGTGGA
JMFS036E03+           CCATTGTCATAACCTCCATAATAAAAACCTTGCTCCAGTGGAGTATAAGAATTGGGTGGA
JMSF036E10+           CCATTGTCATAACCTCCATAATAAAAACCTTGCTCCAGTGGAGTATAAGAATTGGGTGGA
                      ____________________________________________________________
consensus             CCATTGTCATAACCTCCATAATAAAAACCTTGCTCCAGTGGAGTATAAGAATTGGGTGGA
 
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JMFS025A03+           TGCATAGTAGAAAGAGCTGCACTTGTTTCAGAGCTAACAGATTGGTCTTTGGCATTTACT
JMFS036E03+           TGCATAGTAGAAAGAGCTGCACTTGTTTCAGAGCTAACAGATTGGTCTTTGGCATTTACT
JMSF036E10+           TGCATAGTAGAAAGAGCTGCACTTGTTTCAGAGCTAACAGATTGGTCTTTGGCATTTACT
                      ____________________________________________________________
consensus             TGCATAGTAGAAAGAGCTGCACTTGTTTCAGAGCTAACAGATTGGTCTTTGGCATTTACT
 
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JMFS025A03+           GGAACCACAGATATGGCTGCATCCGGAGAATGATTGGCAGAAACAATCCTTTCATCTTTG
JMFS036E03+           GGAACCACAGATATGGCTGCATCCGGAGAATGATTGGCAGAAACAATCCTTTCATCTTTG
JMSF036E10+           GGAACCACAGATATGGCTGCATCCGGAGAATGATTGGCAGAAACAATCCTTTCATCTTTG
                      ____________________________________________________________
consensus             GGAACCACAGATATGGCTGCATCCGGAGAATGATTGGCAGAAACAATCCTTTCATCTTTG
 
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JMFS025A03+           GGCGAAATAGGCTGTTCCGCTACAGCATGCAGCTCAGCTCTCTCACCTGGAGAGGAGTTG
JMFS036E03+           GGCGAAATAGGCTGTTCCGCTACAGCATGCAGCTCAGCTCTCTCACCTGGAGAGGAGTTG
JMSF036E10+           GGCGAAATAGGCTGTTCCGCTACAGCATGCAGCTCAGCTCTCTCACCTGGAGAGGAGTTG
                      ____________________________________________________________
consensus             GGCGAAATAGGCTGTTCCGCTACAGCATGCAGCTCAGCTCTCTCACCTGGAGAGGAGTTG
 
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JMFS025A03+           GGAGCAAATCGATCAAAACCCTGCTGGTTGTTTTCCTCCATGAATCCAATTGAATCGGAA
JMFS036E03+           GGAGCAAATCGATCAAAACCCTGCTGGTTGTTTTCCTCCATGAATCCAATTGAATCGGAA
JMSF036E10+           GGAGCAAATCGATCAAAACCCTGCTGGTTGTTTTCCTCCATGAATCCAATTGAATCGGAA
                      ____________________________________________________________
consensus             GGAGCAAATCGATCAAAACCCTGCTGGTTGTTTTCCTCCATGAATCCAATTGAATCGGAA
 
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JMFS025A03+           ACGTCGACAACAGAAAAGCTCTAGAGTTGAACCAAATCACTCTCTTTATTCACTCAGATG
JMFS036E03+           ACGTCGACAACAGAAAAGCTCTAGAGTTGAACCAAATCACTCTCTTTATTCACTCAGATG
JMSF036E10+           ACGTCGACAACAGAAAAGCTCTAGAGTTGAACCAAATCACTCTCTTTATTCACTCAGATG
                      ____________________________________________________________
consensus             ACGTCGACAACAGAAAAGCTCTAGAGTTGAACCAAATCACTCTCTTTATTCACTCAGATG
 
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JMFS025A03+           TAAATCCAACAGTATAATAATAATAATAAAAACAAAGAGAGTCTCTCCTCTGAGGTTTCC
JMFS036E03+           TAAATCCAACAGTATAATAATAATAATAAAAACAAAGAGAGTCTCTCCTCTGAGGTTTCC
JMSF036E10+           TAAATCCAACAGTATAATAATAATAATAAAAACAAAGAGAGTCTCTCCTCTGAGGTTTCC
                      ____________________________________________________________
consensus             TAAATCCAACAGTATAATAATAATAATAAAAACAAAGAGAGTCTCTCCTCTGAGGTTTCC
 
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JMFS025A03+           CCAAT                                                       
JMFS036E03+           CCAAT                                                       
JMSF036E10+           CCAATTGGAATCGAGGAGTGAGAATCCAAGGAAAGGATTAATTTGCTTCGCGGGAGGGTT
                      ____________________________________________________________
consensus             CCAATTGGAATCGAGGAGTGAGAATCCAAGGAAAGGATTAATTTGCTTCGCGGGAGGGTT
 
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JMSF036E10+           TGAAAACAAAGAGAAGCAAGGGGGGTTTAGGGTCCACCATACGCCAGTATATATATGTGT
                      ____________________________________________________________
consensus             TGAAAACAAAGAGAAGCAAGGGGGGTTTAGGGTCCACCATACGCCAGTATATATATGTGT
 
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JMSF036E10+           GTACTACATACACATGTATGTACGTATATCTCTCTCTGCTTCTCTGTGTCCAAGTGCGTC
                      ____________________________________________________________
consensus             GTACTACATACACATGTATGTACGTATATCTCTCTCTGCTTCTCTGTGTCCAAGTGCGTC