clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF008C04 | Sequence | 535 | 009455 (5) | ref|XP_006349328.1| | 1e-14 | PREDICTED: YTH domain family protein 1-like [Solanum tuberosum] | 775 | 002582 (10) | ref|XP_009621898.1| | 1e-92 | PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform |
JMFF022E18 | Sequence | 519 | 009455 (5) | ref|XP_006349328.1| | 1e-14 | PREDICTED: YTH domain family protein 1-like [Solanum tuberosum] | 729 | 002582 (10) | ref|XP_009621898.1| | 1e-30 | PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform |
JMFF022J04 | Sequence | 541 | 009455 (5) | ref|XP_006349328.1| | 2e-14 | PREDICTED: YTH domain family protein 1-like [Solanum tuberosum] | 695 | 002582 (10) | ref|XP_009621898.1| | 2e-65 | PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform |
JMFF028F08 | Sequence | 521 | 009455 (5) | ref|XP_006349328.1| | 1e-14 | PREDICTED: YTH domain family protein 1-like [Solanum tuberosum] | 679 | 002582 (10) | ref|XP_009621898.1| | 6e-76 | PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform |
JMSF036D15 | Sequence | 700 | 009455 (5) | ref|XP_006349328.1| | 2e-29 | PREDICTED: YTH domain family protein 1-like [Solanum tuberosum] | 759 | 002582 (10) | ref|XP_009621898.1| | 3e-68 | PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform |
This contig is upended
. : . : . : . : . : . :
JMSF036D15+ CATTCGAGCCAGCCATGGATTTAAAATTCCGAGATTTAGA
____________________________________________________________
consensus CATTCGAGCCAGCCATGGATTTAAAATTCCGAGATTTAGA
. : . : . : . : . : . :
JMSF036D15+ ATCCGTGCCATATGTTAGATCGCCATTTGTAAAACACCATGAATAACAAGGCATGCCATC
____________________________________________________________
consensus ATCCGTGCCATATGTTAGATCGCCATTTGTAAAACACCATGAATAACAAGGCATGCCATC
. : . : . : . : . : . :
JMSF036D15+ AGAACCATACGATACAGGCTGCTGAAGGTATCCCGACGTTGTGTAGGGCTGTTGCTTCCC
____________________________________________________________
consensus AGAACCATACGATACAGGCTGCTGAAGGTATCCCGACGTTGTGTAGGGCTGTTGCTTCCC
. : . : . : . : . : . :
JMFF022E18+ CCAGTAGTATACGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
JMFF028F08+ CCAGTAGTATACGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
JMFF022J04+ CCAGTAGTATACGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
JMFF008C04+ CCAGTAGTATNCGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
JMSF036D15+ GTCAGAACCAATATATCCAGTAGTATACGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
____________________________________________________________
consensus GTCAGAACCAATATATCCAGTAGTATACGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
. : . : . : . : . : . :
JMFF022E18+ TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
JMFF028F08+ TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
JMFF022J04+ TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
JMFF008C04+ TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
JMSF036D15+ TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
____________________________________________________________
consensus TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
. : . : . : . : . : . :
JMFF022E18+ ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
JMFF028F08+ ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
JMFF022J04+ ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
JMFF008C04+ ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
JMSF036D15+ ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
____________________________________________________________
consensus ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
. : . : . : . : . : . :
JMFF022E18+ AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
JMFF028F08+ AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
JMFF022J04+ AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
JMFF008C04+ AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
JMSF036D15+ AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
____________________________________________________________
consensus AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
. : . : . : . : . : . :
JMFF022E18+ CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
JMFF028F08+ CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
JMFF022J04+ CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
JMFF008C04+ CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
JMSF036D15+ CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
____________________________________________________________
consensus CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
. : . : . : . : . : . :
JMFF022E18+ AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
JMFF028F08+ AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
JMFF022J04+ AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
JMFF008C04+ AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
JMSF036D15+ AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
____________________________________________________________
consensus AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
. : . : . : . : . : . :
JMFF022E18+ CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAACCA
JMFF028F08+ CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAACCA
JMFF022J04+ CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAACCA
JMFF008C04+ CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAACCA
JMSF036D15+ CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAAACA
____________________________________________________________
consensus CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAACCA
. : . : . : . : . : . :
JMFF022E18+ GGTAAGGAGGAACCCGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
JMFF028F08+ GGTAAGGAGGAACCCGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
JMFF022J04+ GGTAAGGAGGAACCTGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
JMFF008C04+ GGTAAGGAGGAACCCGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
JMSF036D15+ GGTAAGGAGGAACCCGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
____________________________________________________________
consensus GGTAAGGAGGAACCCGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
. : . : . : . : . : . :
JMFF022E18+ AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAG
JMFF028F08+ AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAGAG
JMFF022J04+ AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAGAG
JMFF008C04+ AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAGAG
JMSF036D15+ AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAGAGGGG
____________________________________________________________
consensus AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAGAGGGG