Contig 009455:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008C04Sequence535009455 (5)ref|XP_006349328.1|1e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]775002582 (10)ref|XP_009621898.1|1e-92PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMFF022E18Sequence519009455 (5)ref|XP_006349328.1|1e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]729002582 (10)ref|XP_009621898.1|1e-30PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMFF022J04Sequence541009455 (5)ref|XP_006349328.1|2e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]695002582 (10)ref|XP_009621898.1|2e-65PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMFF028F08Sequence521009455 (5)ref|XP_006349328.1|1e-14PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]679002582 (10)ref|XP_009621898.1|6e-76PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform
JMSF036D15Sequence700009455 (5)ref|XP_006349328.1|2e-29PREDICTED: YTH domain family protein 1-like [Solanum tuberosum]759002582 (10)ref|XP_009621898.1|3e-68PREDICTED: YTH domain-containing family protein 1-like [Nicotiana tomentosiform

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF036D15+ CATTCGAGCCAGCCATGGATTTAAAATTCCGAGATTTAGA
                      ____________________________________________________________
consensus CATTCGAGCCAGCCATGGATTTAAAATTCCGAGATTTAGA
 
. : . : . : . : . : . :
JMSF036D15+ ATCCGTGCCATATGTTAGATCGCCATTTGTAAAACACCATGAATAACAAGGCATGCCATC
                      ____________________________________________________________
consensus ATCCGTGCCATATGTTAGATCGCCATTTGTAAAACACCATGAATAACAAGGCATGCCATC
 
. : . : . : . : . : . :
JMSF036D15+ AGAACCATACGATACAGGCTGCTGAAGGTATCCCGACGTTGTGTAGGGCTGTTGCTTCCC
                      ____________________________________________________________
consensus AGAACCATACGATACAGGCTGCTGAAGGTATCCCGACGTTGTGTAGGGCTGTTGCTTCCC
 
. : . : . : . : . : . :
JMFF022E18+ CCAGTAGTATACGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
JMFF028F08+ CCAGTAGTATACGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
JMFF022J04+ CCAGTAGTATACGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
JMFF008C04+ CCAGTAGTATNCGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
JMSF036D15+ GTCAGAACCAATATATCCAGTAGTATACGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
                      ____________________________________________________________
consensus GTCAGAACCAATATATCCAGTAGTATACGGAGTATAGCCAGGCAAATAGTAGAGGTAAAA
 
. : . : . : . : . : . :
JMFF022E18+ TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
JMFF028F08+ TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
JMFF022J04+ TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
JMFF008C04+ TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
JMSF036D15+ TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
                      ____________________________________________________________
consensus TCCATTATCCGATGCCATGCTCTGACCATTGTTATAATTCCCATTATAACCTGGGTAGTA
 
. : . : . : . : . : . :
JMFF022E18+ ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
JMFF028F08+ ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
JMFF022J04+ ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
JMFF008C04+ ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
JMSF036D15+ ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
                      ____________________________________________________________
consensus ATAATCACAACAGCTAGCCAGCGAATAGTATGAACCTTGTTCAGGAACTGCTCCTTGATC
 
. : . : . : . : . : . :
JMFF022E18+ AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
JMFF028F08+ AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
JMFF022J04+ AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
JMFF008C04+ AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
JMSF036D15+ AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
                      ____________________________________________________________
consensus AACACCACCGTTGACACCAGTCTCAGTACTAACCATTGGAGGAACCGGAGATATTGAATC
 
. : . : . : . : . : . :
JMFF022E18+ CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
JMFF028F08+ CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
JMFF022J04+ CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
JMFF008C04+ CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
JMSF036D15+ CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
                      ____________________________________________________________
consensus CAACGCCTTTCCACTTTTAACCGTGCCCATATCTTTGTTGATCAATTTTGTGGATGAGTC
 
. : . : . : . : . : . :
JMFF022E18+ AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
JMFF028F08+ AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
JMFF022J04+ AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
JMFF008C04+ AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
JMSF036D15+ AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
                      ____________________________________________________________
consensus AGACTTCAATCCAGCAGTGACAGCTTCGGATTTCTCCACTATCTTCTCTCCAGCCATGAT
 
. : . : . : . : . : . :
JMFF022E18+ CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAACCA
JMFF028F08+ CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAACCA
JMFF022J04+ CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAACCA
JMFF008C04+ CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAACCA
JMSF036D15+ CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAAACA
                      ____________________________________________________________
consensus CGACCTTCGCAACCCAATGTTCAGCCTTTTAAGAAAAAAGGTGTAAGAAAACAGGAACCA
 
. : . : . : . : . : . :
JMFF022E18+ GGTAAGGAGGAACCCGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
JMFF028F08+ GGTAAGGAGGAACCCGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
JMFF022J04+ GGTAAGGAGGAACCTGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
JMFF008C04+ GGTAAGGAGGAACCCGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
JMSF036D15+ GGTAAGGAGGAACCCGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
                      ____________________________________________________________
consensus GGTAAGGAGGAACCCGGCGGCTCGGATCTAACCGGAGCTTCGGAAAACCGCTTTAGAGCT
 
. : . : . : . : . : . :
JMFF022E18+ AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAG
JMFF028F08+ AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAGAG
JMFF022J04+ AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAGAG
JMFF008C04+ AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAGAG
JMSF036D15+ AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAGAGGGG
                      ____________________________________________________________
consensus AAAAGCGGTTTTCCCTGCGGAGATTTGAAGCGGGGTGAAAGACCAAAAGGAAAAGAGGGG