Contig 009447:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-                                    CTTGTTGATCTGATATTGACCCACTATGCTGCAG
                      ____________________________________________________________
consensus                                       CTTGTTGATCTGATATTGACCCACTATGCTGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          GAGTATGGGCACGAATTTTTTAAGTACATCGTCATGAACATAGATTTTCAGGTGAAGATT
                      ____________________________________________________________
consensus             GAGTATGGGCACGAATTTTTTAAGTACATCGTCATGAACATAGATTTTCAGGTGAAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          TGTGACTATCTTATTGAACGATACTACTTTATACAGCATTTTACAAGTAGGAATACAATA
rJMSF035C10-                                            AGCATTTTACAAGTAGGAATACAATA
                      ____________________________________________________________
consensus             TGTGACTATCTTATTGAACGATACTACTTTATACAGCATTTTACAAGTAGGAATACAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          ATCTAGGTTATTATGCGTGGAGTAGCTAGAGCTGATTGAGCGTGAATTCTACTGTAAAAA
rJMSF035C10-          ATCTAGGTTATTATGCGTGGAGTAGCTAGAGCTGATTGAGCGTGAATTCTACTGTAAAAA
                      ____________________________________________________________
consensus             ATCTAGGTTATTATGCGTGGAGTAGCTAGAGCTGATTGAGCGTGAATTCTACTGTAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          TTATGGGTTCTACTTGCCAACATCTAGACATGCAGAATAGTATGACATAAAAGAGAAAAT
rJMSF035C10-          TTATGGGTTCTACTTGCCAACATCTAGACATGCAGAATAGTATGACATAAAAGAGAAAAT
                      ____________________________________________________________
consensus             TTATGGGTTCTACTTGCCAACATCTAGACATGCAGAATAGTATGACATAAAAGAGAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          ACCATATCTCGGATGATTGTATCCGAGATACCAAAACCCCATATTATTGCCTATTTACTG
rJMSF035C10-          ACCATATCTCGGATGATTGTATCCGAGATACCAAAACCCCATATTATTGCCTATTTACTG
                      ____________________________________________________________
consensus             ACCATATCTCGGATGATTGTATCCGAGATACCAAAACCCCATATTATTGCCTATTTACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          CAGGAAACCCTCAGTGATCTCTCTCTTTCTCTCTCTCATTGCTCGGTCGTGGAGCAAGTG
rJMSF035C10-          CAGGAAACCCTCAGTGATCTCTCTCTTTCTCTCTCTCATTGCTCGGTCGTGGAGCAAGTG
                      ____________________________________________________________
consensus             CAGGAAACCCTCAGTGATCTCTCTCTTTCTCTCTCTCATTGCTCGGTCGTGGAGCAAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          CATTTCTTCTGATGCTCGGTGAGTTCCTGAATCTGCTTCTGTAGAAACTTGACATATTCT
rJMSF035C10-          CATTTCTTCTGATGCTCGGTGAGTTCCTGAATCTGCTTCTGTAGAAACTTGACATATTCT
                      ____________________________________________________________
consensus             CATTTCTTCTGATGCTCGGTGAGTTCCTGAATCTGCTTCTGTAGAAACTTGACATATTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          ACTGCTTCTTCCAACATGTCAGCCGTATTAGTTTGCTTATCCATATTAGGCACAAGCTCC
rJMSF035C10-          ACTGCTTCTTCCAACATGTCAGCCGTATTAGTTTGCTTATCCATATTAGGCACAAGCTCC
                      ____________________________________________________________
consensus             ACTGCTTCTTCCAACATGTCAGCCGTATTAGTTTGCTTATCCATATTAGGCACAAGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          TGAAGCTTCCTTATCCTGTCACTAATTCGCGTTCTTCTAACCCTCTCTGCAATACTTCGG
rJMSF035C10-          TGAAGCTTCCTTATCCTGTCACTAATTCGCGTTCTTCTAACCCTCTCTGCAATACTTCGG
                      ____________________________________________________________
consensus             TGAAGCTTCCTTATCCTGTCACTAATTCGCGTTCTTCTAACCCTCTCTGCAATACTTCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          GGATGGGTAGCACAACCACGCTTTGCTCTAACCCTGCATGGGACTAAATCTTCCATCATC
rJMSF035C10-          GGATGGGTAGCACAACCACGCTTTGCTCTAACCCTGCATGGGACTAAATCTTCCATCATC
                      ____________________________________________________________
consensus             GGATGGGTAGCACAACCACGCTTTGCTCTAACCCTGCATGGGACTAAATCTTCCATCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          TTCTCCATTTCTGCATCCAACGACCCACCAGCACTGCGTAATCGCCCACTTTGTTCTCCT
rJMSF035C10-          TTCTCCATTTCTGCATCCAACGACCCACCAGCACTGCGTAATCGCCCACTTTGTTCTC--
JMFN007P08+                            CAACGACCCACCAGCACTGCGTAATCGCCCACTTTGTTCTCCT
                      ____________________________________________________________
consensus             TTCTCCATTTCTGCATCCAACGACCCACCAGCACTGCGTAATCGCCCACTTTGTTCTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          TTCAAGGGAGATGATAATTTAGCGGAGGGGCTTTGGGAATCGGCCTCTCTGGGCCGCTTA
rJMSF035C10-          --CAAGGGAGATGATAATTTAGCGGAGGGGCTTTGGGAATCGGCCTCTCTGGGCCGCTTA
JMFN007P08+           TTCAAGGGAGATGATAATTTAGCGGAGGGGCTTTGGGAATCGGCCTCTCTGGGCCGCTTA
JMSF035C10+             CAAGGGAGATGATAATTTAGCGGAGGGGCTTTGGGAATCGGCCTCTCTGGGCCGCTTA
                      ____________________________________________________________
consensus             TTCAAGGGAGATGATAATTTAGCGGAGGGGCTTTGGGAATCGGCCTCTCTGGGCCGCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002P07-          GCTGACTGAGCCACATCCATGG                                      
rJMSF035C10-          GCTGACTGAGCCACATCCATGGGAGAAGAAAGGTAGTCGTAGCTGGGCGGAGCTCCGAAG
JMFN007P08+           GCTGACTGAGCCACATCCATGGGAGAAGAAAGGTAGTCGTAGCTGGGCGGAGCTCCGAAG
JMSF035C10+           GCTGACTGAGCCACATCCATGGGAGAAGAAAGGTAGTCGTAGCTGGGCGGAGCTCCGAAG
                      ____________________________________________________________
consensus             GCTGACTGAGCCACATCCATGGGAGAAGAAAGGTAGTCGTAGCTGGGCGGAGCTCCGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035C10-          CTGGGGA                                                     
JMFN007P08+           CTGGGGAAGAAGATATCTGAGCTGATCTGAGAGAGAAACTCCGCCGGAGAGCTGTTCTGC
JMSF035C10+           CTGGGGAAGAAGATATCTGAGCTGATCTGAGAGAGAAACTCCGCCGGAGAGCTGTTCTGC
                      ____________________________________________________________
consensus             CTGGGGAAGAAGATATCTGAGCTGATCTGAGAGAGAAACTCCGCCGGAGAGCTGTTCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007P08+           CTGACGAAATTACTAAGTCCAGATGCTGCTTCCCCGCCACCGCCTCCGGACTCGAATAGG
JMSF035C10+           CTGACGAAATTACTAAGTCCAGATGCTGCTTCCCCGCCACCGCCTCCGGACTCGAATAGG
                      ____________________________________________________________
consensus             CTGACGAAATTACTAAGTCCAGATGCTGCTTCCCCGCCACCGCCTCCGGACTCGAATAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007P08+           CCCAGATCGGCGGCGTATCTGGAGCCACTTCCGCCAACAGACGCCTGCTTAAGCTGAGCT
JMSF035C10+           CCCAGATCGGCGGCGTATCTGGAGCCACTTCCGCCAACAGACGCCTGCTTAAGCTGAGCT
                      ____________________________________________________________
consensus             CCCAGATCGGCGGCGTATCTGGAGCCACTTCCGCCAACAGACGCCTGCTTAAGCTGAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007P08+           GGTGGCGTAGGCAAGGGTTGAGAGTGCGGGTGCGGTGGAGGCTTGCTAGAAGAAGGAAGT
JMSF035C10+           GGTGGCGTAGGCAAGGGTTGAGAGTGCGGGTGCGGTGGAGGCTTGCTAGAAGAAGGAAGT
                      ____________________________________________________________
consensus             GGTGGCGTAGGCAAGGGTTGAGAGTGCGGGTGCGGTGGAGGCTTGCTAGAAGAAGGAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007P08+           ATCGGAGGAGGGTCGAGAACGACGTCGTTTTCCGTGTCGGAATCCAGGAGCGCTTCCAAC
JMFF002P07+                                       TTTCCGTGTCGGAATCCAGGAGCGCTTCCAAC
JMSF035C10+           ATCGGAGGAGGGTCGAGAACGACGTCGTTTTCCGTGTCGGAATCCAGGAGCGCTTCCAAC
                      ____________________________________________________________
consensus             ATCGGAGGAGGGTCGAGAACGACGTCGTTTTCCGTGTCGGAATCCAGGAGCGCTTCCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007P08+           CAGGTCGCCGGAGCTGAGCGGAAGCGCGTCAGTCCTGCTCCTCGGCTCGGCTCACTTCCG
JMFF002P07+           CAGGTCGCCGGAGNTGAGCGGAAGCGCGTCAGTCCTGCTCCTCGGCTCGGCTCACTTCCG
JMSF035C10+           CAGGTCGCCGGAGCTGAGCGGAAGCGCGTCAGTCCTGCTCCTCGGCTCGGCTCACTTCCG
                      ____________________________________________________________
consensus             CAGGTCGCCGGAGCTGAGCGGAAGCGCGTCAGTCCTGCTCCTCGGCTCGGCTCACTTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007P08+           CCGCCTCCGGCGCCACTCTCCGGCTGCATCGGTTACTTTCTATATCCGGATATATCGTTA
JMFF002P07+           CCGCCTCCGGCGCCACTCTCCGGCTGCATCGGTTACTTTCTATATCCGGATATATCGTTA
JMSF035C10+           CCGCCTCCGGCGCCACTCTCCGGCTGCATCGGTTACTTTCTATATCCGGATATATCGTTA
                      ____________________________________________________________
consensus             CCGCCTCCGGCGCCACTCTCCGGCTGCATCGGTTACTTTCTATATCCGGATATATCGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN007P08+           TCCCCGTTTTCAGGTGAATTTTGTGGTGTTACTGTGAGCAAGA                 
JMFF002P07+           TCCCCGTTTTCAGGTGAATTTTGTGGTGTTACTGTGAGCAAGAGGCAAGAACC       
JMSF035C10+           TCCCCGTTTTCAGGTGAATTTTGTGGTGTTACTGTGAGCAAGAGGCAAGAACCCGAGAGC
                      ____________________________________________________________
consensus             TCCCCGTTTTCAGGTGAATTTTGTGGTGTTACTGTGAGCAAGAGGCAAGAACCCGAGAGC