Contig 009446:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035B24Sequence580009446 (2)ref|XP_009630326.1|5e-34PREDICTED: protein IQ-DOMAIN 1-like [Nicotiana tomentosiformis]752009446 (2)ref|XP_009630326.1|1e-94PREDICTED: protein IQ-DOMAIN 1-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF035B24-                                  TTCATTCCATCATCACAACCATAACAAATAAATAGA
                      ____________________________________________________________
consensus                                     TTCATTCCATCATCACAACCATAACAAATAAATAGA
 
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rJMSF035B24-          AAAACTATGGAAGATTTTTCGAGTCTAAACAGGCTCTTGGGGAGTTTGAGTTTCAGGGTT
                      ____________________________________________________________
consensus             AAAACTATGGAAGATTTTTCGAGTCTAAACAGGCTCTTGGGGAGTTTGAGTTTCAGGGTT
 
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rJMSF035B24-          ATGGTCAGATGGTTTTCTTGCTGGAGTCGAGATCTTACCATTTGACAATGGAGGATTGTT
                      ____________________________________________________________
consensus             ATGGTCAGATGGTTTTCTTGCTGGAGTCGAGATCTTACCATTTGACAATGGAGGATTGTT
 
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rJMSF035B24-          GACTGAAACAACAAGTTTAACAGGTCCCAAGCTTGCTGTTTTGCCTGCCTTTTTTGGGTC
                      ____________________________________________________________
consensus             GACTGAAACAACAAGTTTAACAGGTCCCAAGCTTGCTGTTTTGCCTGCCTTTTTTGGGTC
 
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rJMSF035B24-          TGCTTGAACCCTGATTTCCCATGGGCGAACCGCTATCCATCTCTCCTTCCAGCTCCATCC
                      ____________________________________________________________
consensus             TGCTTGAACCCTGATTTCCCATGGGCGAACCGCTATCCATCTCTCCTTCCAGCTCCATCC
 
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rJMSF035B24-          CCAGCTCTCTTTCCCCAGATTGTAGTATGCTTGCCCAAAATAGTGACCTGAATTTGCCCT
                      ____________________________________________________________
consensus             CCAGCTCTCTTTCCCCAGATTGTAGTATGCTTGCCCAAAATAGTGACCTGAATTTGCCCT
 
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rJMSF035B24-          CCACTGGTGAGAAAATGCATAAGCCATTGCCCTTTCCCTTTTAACAGCTGCTTCTTCCCT
                      ____________________________________________________________
consensus             CCACTGGTGAGAAAATGCATAAGCCATTGCCCTTTCCCTTTTAACAGCTGCTTCTTCCCT
 
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rJMSF035B24-          CTGCTGAATCTTTTGAAGGATTTCCTCCATGGTTTCTGACCCACTGCTCCATTCCACCTG
JMSF035B24+                               TTTCCTCCATGGTTTCTGACCCACTGCTCCATTCCACCTG
                      ____________________________________________________________
consensus             CTGCTGAATCTTTTGAAGGATTTCCTCCATGGTTTCTGACCCACTGCTCCATTCCACCTG
 
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rJMSF035B24-          AAGCTCATGAAGCTTAGCGTCAAGCTTGATCTGATTCTGAATCTTCTTCTGCTTGAGCCG
JMSF035B24+           AAGCTCATGAAGCTTAGCGTCAAGCTTGATCTGATTCTGAATCTTCTTCTGCTTGAGCCG
                      ____________________________________________________________
consensus             AAGCTCATGAAGCTTAGCGTCAAGCTTGATCTGATTCTGAATCTTCTTCTGCTTGAGCCG
 
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rJMSF035B24-          GCCTTGAGTGACCATGCAGAGGCGACGGGCTTTGATCTCCGACTGGATTCTGCTCCATGA
JMSF035B24+           GCCTTGAGTGACCATGCAGAGGCGACGGGCTTTGATCTCCGACTGGATTCTGCTCCATGA
                      ____________________________________________________________
consensus             GCCTTGAGTGACCATGCAGAGGCGACGGGCTTTGATCTCCGACTGGATTCTGCTCCATGA
 
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rJMSF035B24-          ATGTATATGCTTCAGAGTTGCAGCAACTTGGTCGTTTACACTATAAGCTGCTTCAATGGC
JMSF035B24+           ATGTATATGCTTCAGAGTTGCAGCAACTTGGTCGTTTACACTATAAGCTGCTTCAATGGC
                      ____________________________________________________________
consensus             ATGTATATGCTTCAGAGTTGCAGCAACTTGGTCGTTTACACTATAAGCTGCTTCAATGGC
 
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rJMSF035B24-          GCCCTGGAATTTCACTGTCCCTCTTAGACGCCGAATAGCTTTTCTACCCTGCTTGTATGC
JMSF035B24+           GCCCTGGAATTTCACTGTCCCTCTTAGACGCCGAATAGCTTTTCTACCCTGCTTGTATGC
                      ____________________________________________________________
consensus             GCCCTGGAATTTCACTGTCCCTCTTAGACGCCGAATAGCTTTTCTACCCTGCTTGTATGC
 
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rJMSF035B24-          CCTGAAGGCTCTTTGAATTCTAGTGGCAGCAATTTCTTCAGTCAGTTCATGGTTCT    
JMSF035B24+           CCTGAAGGCTCTTTGAATTCTAGTGGCAGCAATTTCTTCAGTCAGTTCATTGTTCTTGCT
                      ____________________________________________________________
consensus             CCTGAAGGCTCTTTGAATTCTAGTGGCAGCAATTTCTTCAGTCAGTTCATTGTTCTTGCT
 
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JMSF035B24+           TGAACCACCATTTGCTTCGGTTCTTACTGACTGCAACCATTTAGACGGACCATTCTTTCG
                      ____________________________________________________________
consensus             TGAACCACCATTTGCTTCGGTTCTTACTGACTGCAACCATTTAGACGGACCATTCTTTCG
 
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JMSF035B24+           TGTCTTAAGGCCAGTGATCTTTCTGTACCACCCACGCCAACCCATATATGTTGATCAAGA
                      ____________________________________________________________
consensus             TGTCTTAAGGCCAGTGATCTTTCTGTACCACCCACGCCAACCCATATATGTTGATCAAGA
 
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JMSF035B24+           ATATAATGACTGAAGCTGGATATGTATGGACTAATTAAATTAATTTAACCTCATATAGCT
                      ____________________________________________________________
consensus             ATATAATGACTGAAGCTGGATATGTATGGACTAATTAAATTAATTTAACCTCATATAGCT
 
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JMSF035B24+           AGTAACAAAAAGTTAAGGTTGTAAGACATGAGAAAGTCCATATATAGGCATTGTTACGTC
                      ____________________________________________________________
consensus             AGTAACAAAAAGTTAAGGTTGTAAGACATGAGAAAGTCCATATATAGGCATTGTTACGTC