| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS073H05 | Sequence | 627 | 009443 (7) | ref|XP_011081052.1| | 3e-140 | PREDICTED: hydroxymethylglutaryl-CoA synthase isoform X4 [Sesamum indicum] ref| | |||||
| JMSF022P11 | Sequence | 623 | 009443 (7) | ref|XP_009597456.1| | 5e-98 | PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Nicotiana tomentosiformis] | 766 | 009443 (7) | ref|XP_009626966.1| | 2e-114 | PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Nicotiana tomentosiformis] |
| JMSF033N14 | Sequence | 608 | 009443 (7) | ref|XP_006358385.1| | 1e-72 | PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Solanum tuberosum] | 757 | 009443 (7) | ref|XP_009626966.1| | 2e-109 | PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Nicotiana tomentosiformis] |
| JMSF034E07 | Sequence | 653 | 009443 (7) | gb|AHM22941.1| | 3e-63 | 3-hydroxy-3-methylglutaryl coenzyme A synthase [Nicotiana tabacum] | 574 | 012676 (2) | ref|XP_009800463.1| | 1e-68 | PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Nicotiana sylvestris] |
| JMSF035M07 | Sequence | 648 | 009443 (7) | gb|AHM22941.1| | 1e-85 | 3-hydroxy-3-methylglutaryl coenzyme A synthase [Nicotiana tabacum] | 779 | 012676 (2) | ref|XP_009800463.1| | 3e-91 | PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF033N14- GATGATCTCTCAACCATCTA
rJMSF022P11- GATGATCTCTCAACCATCTA
____________________________________________________________
consensus GATGATCTCTCAACCATCTA
. : . : . : . : . : . :
rJMSF033N14- CAGGTTAGCTATCTGGGAAACAACCCATTACACAATACAGGAATATCTCATTGAAAGAAA
rJMSF022P11- CA-GTTAGCTATCTGGGAAACAACCCATTACACAATACAGGAATATCTCATTGAAAGAAA
____________________________________________________________
consensus CAGGTTAGCTATCTGGGAAACAACCCATTACACAATACAGGAATATCTCATTGAAAGAAA
. : . : . : . : . : . :
rJMSF033N14- CTAAATCACATTTCTGCCTGCCAGAGATGCTAAGCACACTTGCTCTCTGGTTTTCTGATC
rJMSF022P11- CTAAATCACATTTCTGCCTGCCAGAGATGCTAAGCACACTTGCTCTCTGGTTTTCTGATC
____________________________________________________________
consensus CTAAATCACATTTCTGCCTGCCAGAGATGCTAAGCACACTTGCTCTCTGGTTTTCTGATC
. : . : . : . : . : . :
rJMSF033N14- ACTAAAGCAGGCACTTGATGGACTCCGGTCAGTGGCCGTTGGCCACTGCTGCCTTCGTTT
rJMSF022P11- ACTAAAGCAGGCACTTGATGGACTCCGGTCAGTGGCCGTTGGCCACTGCTGCCTTCGTTT
____________________________________________________________
consensus ACTAAAGCAGGCACTTGATGGACTCCGGTCAGTGGCCGTTGGCCACTGCTGCCTTCGTTT
. : . : . : . : . : . :
rJMSF033N14- CTTTCTTGGCATAGAATCTCCGGTACTTGGAATCAACCTCGGTGAGGTAGTAGGTGCCCG
rJMSF022P11- CTTTCTTGGCATAGAATCTCCGGTACTTGGAATCAACCTCGGTGAGGTAGTAGGTGCCCG
____________________________________________________________
consensus CTTTCTTGGCATAGAATCTCCGGTACTTGGAATCAACCTCGGTGAGGTAGTAGGTGCCCG
. : . : . : . : . : . :
rJMSF033N14- GAGCAAGGAGGCTGCAATCCTTACTCGTTACAAAGTCTTTTGCACCATATCTGTGCTCCA
rJMSF022P11- GAGCAAGGAGGCTGCAATCCTTACTCGTTACAAAGTCTTTTGCACCATATCTGTGCTCCA
____________________________________________________________
consensus GAGCAAGGAGGCTGCAATCCTTACTCGTTACAAAGTCTTTTGCACCATATCTGTGCTCCA
. : . : . : . : . : . :
rJMSF033N14- TTATTTTCAGAATTTCCACGAATTTTTCGGGAGGGAACTCATGCCTTGACTTCAACTTCT
rJMSF022P11- TTATTTTCAGAATTTCCACGAATTTTTCGGGAGGGAACTCATGCCTTGACTTCAACTTCT
____________________________________________________________
consensus TTATTTTCAGAATTTCCACGAATTTTTCGGGAGGGAACTCATGCCTTGACTTCAACTTCT
. : . : . : . : . : . :
rJMSF033N14- CTGCAATATTCAAAACGGCTGCAATGTTTGACAAGCTGAAAGGATGTTGACCCTCACGAA
rJMSF022P11- CTGCAATATTCAAAACGGCTGCAATGTTTGACAAGCTGAAAGGATGTTGACCCTCACGAA
____________________________________________________________
consensus CTGCAATATTCAAAACGGCTGCAATGTTTGACAAGCTGAAAGGATGTTGACCCTCACGAA
. : . : . : . : . : . :
rJMSF033N14- TGCGGAGTGAAAACATTGTGGCAGTTGACCCGCTCCCATAGGAGAACATTACTACCCGTT
rJMSF022P11- TGCGGAGTGAAAACATTGTGGCAGTTGACCCGCTCCCATAGGAGAACATTACTACCCGTT
____________________________________________________________
consensus TGCGGAGTGAAAACATTGTGGCAGTTGACCCGCTCCCATAGGAGAACATTACTACCCGTT
. : . : . : . : . : . :
rJMSF033N14- GCCCAGGCAAGGTGCTGTGCTTGTTGTGGATAAGGGATATGAATGCAGCGTAGATCGATG
rJMSF022P11- GCCCAGGCAAGGTGCTGTGCTTGTTGTGGATAAGGGATATGAATGCAGCGTAGATCGATG
____________________________________________________________
consensus GCCCAGGCAAGGTGCTGTGCTTGTTGTGGATAAGGGATATGAATGCAGCGTAGATCGATG
. : . : . : . : . : . :
rJMSF033N14- CAGTGTACATGTTGCCAACTTGTTTTGGCACTAACGTGGATGGCTGCACCTTGGCATCGT
rJMSF022P11- CAGTGTACATGTTGCCAACTTGTTTTGGCACTAACGTGGATGGCTGCACCTTGGCATCGT
____________________________________________________________
consensus CAGTGTACATGTTGCCAACTTGTTTTGGCACTAACGTGGATGGCTGCACCTTGGCATCGT
. : . : . : . : . : . :
rJMSF033N14- AAAACGGTTTGGAAACTTGTTGGGATGCCTTTTCAAGATCACGGTTTGAGTAGCTCTCGT
rJMSF022P11- AAAACGGTTTGGAAACTTGTTGGGATGCCTTTTCAAGATCACGGTTTGAGTAGCTCTCGT
____________________________________________________________
consensus AAAACGGTTTGGAAACTTGTTGGGATGCCTTTTCAAGATCACGGTTTGAGTAGCTCTCGT
. : . : . : . : . : . :
rJMSF033N14- CACCAGTTAAGGATGAAAACGGTGCCNACTTCTCTTTATCAGCCTCATTAATATAGCTCG
rJMSF022P11- CACCAGTTAAGGATGAAAACGGTGCCAACTTCTCTTTATCAGCCTCATTAATATAGCTCG
JMFS073H05+ TGAAAACGGTGCCAACTTCTCTTTATCAGCCTCATTAATATAGCTCG
____________________________________________________________
consensus CACCAGTTAAGGATGAAAACGGTGCCAACTTCTCTTTATCAGCCTCATTAATATAGCTCG
. : . : . : . : . : . :
rJMSF033N14- CGTTCCTCAAAA
rJMSF022P11- CGTTCCTCAAAAAGTCATTAAATAGCA
JMFS073H05+ CGTTCCTCAAAAAGTCATTAAATAGCAGTCTAGCAAAGCTCTTCTGAACAAGCTTATTAT
____________________________________________________________
consensus CGTTCCTCAAAAAGTCATTAAATAGCAGTCTAGCAAAGCTCTTCTGAACAAGCTTATTAT
. : . : . : . : . : . :
JMFS073H05+ AAGGAGAATGGAAAACAAAGTAGTCGGCATCAGCAACAGAAAACGATTTGCCCTCTAATT
____________________________________________________________
consensus AAGGAGAATGGAAAACAAAGTAGTCGGCATCAGCAACAGAAAACGATTTGCCCTCTAATT
. : . : . : . : . : . :
JMFS073H05+ TCTCGTATTTGCTGCACAGGCTCTTGTAGCATGAATCGAGTGCCATGAGATAACACGTTT
____________________________________________________________
consensus TCTCGTATTTGCTGCACAGGCTCTTGTAGCATGAATCGAGTGCCATGAGATAACACGTTT
. : . : . : . : . : . :
JMFS073H05+ GTGAAAGCTTACCATCAACGACCGGATATTCACTGTCGAGAATAGGCTTGTAAAAGTCAT
____________________________________________________________
consensus GTGAAAGCTTACCATCAACGACCGGATATTCACTGTCGAGAATAGGCTTGTAAAAGTCAT
. : . : . : . : . : . :
JMFS073H05+ AGACGTGAGCCATATGGCTACCCCTCAACTTGCTCTCGAAAACAATCGGAGCATCGGGCC
____________________________________________________________
consensus AGACGTGAGCCATATGGCTACCCCTCAACTTGCTCTCGAAAACAATCGGAGCATCGGGCC
. : . : . : . : . : . :
JMFS073H05+ CTACTAGCATAGCAATAGCTGCAGCTCCTCCAGTTGGCCGAGCTGGCCCCTCAGCATAGA
____________________________________________________________
consensus CTACTAGCATAGCAATAGCTGCAGCTCCTCCAGTTGGCCGAGCTGGCCCCTCAGCATAGA
. : . : . : . : . : . :
JMFS073H05+ CCGCACTGTCTGTGCACACAACGAGCCCATAGCGGCCATCCCATGAACTGCTCTCAACCC
JMSF033N14+ C
____________________________________________________________
consensus CCGCACTGTCTGTGCACACAACGAGCCCATAGCGGCCATCCCATGAACTGCTCTCAACCC
. : . : . : . : . : . :
JMFS073H05+ AATTCACACAGTTAAACAATGCAGCAGTTCCTCCATAGCATGCATTGGTCGAGTCAACAC
JMSF033N14+ AATTCACACAGTTAAACAATGCAGCAGTTCCTCCATAGCATGCATTGGTCGAGTCAACAC
____________________________________________________________
consensus AATTCACACAGTTAAACAATGCAGCAGTTCCTCCATAGCATGCATTGGTCGAGTCAACAC
. : . : . : . : . : . :
JMFS073H05+ CTTCGATGTCAGTGTTCCCGCATTTCTCAAAAATTTGCATCAGGAAAGTCTTGATAGATT
JMSF022P11+ AGGAAAGTCTTGATAGATT
JMSF033N14+ NTTCGATGTCAGTGTTCCCGCATTTCTCAAAAATNTGCATCAGGAAAGTCTTGATAGATT
JMSF035M07+ AGGAATGTCTTGATTGATT
JMSF034E07+ CATTTCTCAAATATTTGCATCAGGAATGTCTTGATTGATT
____________________________________________________________
consensus CTTCGATGTCAGTGTTCCCGCATTTCTCAAAAATTTGCATCAGGAAAGTCTTGATAGATT
. : . : . : . : . : . :
JMFS073H05+ TACTCTTGTCAATAACAGTCTCGCTTCCAACTTCCA
JMSF022P11+ TACTCTTGTCAATAACAGTCTCGCTTCCAACTTCCAATCTACCAATTTGCTTTGGATCAA
JMSF033N14+ TACTCTTGTCAATAACAGTCTCGCTTCCAACTTCCAATCTACCAATTTGCTTTGGATCAA
JMSF035M07+ TGCTTTTGTCTATAACGGTCTCGCTTCCAACTTCCAGTCTACCAATTAGCTTTGGATCAA
JMSF034E07+ TGCTTTTGTCTATAACGGTCTCGCTTCCAACTTCCAGTCTACCAATTAGCTTTGGATCAA
____________________________________________________________
consensus TACTCTTGTCAATAACAGTCTCGCTTCCAACTTCCAGTCTACCAATTTGCTTTGGATCAA
. : . : . : . : . : . :
JMSF022P11+ CTCCATACTTCTCAAGAAGCGAACTAACAGCTGTTAAACTCANGGATATGACATCTTCCA
JMSF033N14+ CTCCATACTTCTCAAGAAGCGAACTAACAGCTGTTAAACTCANGGATATGACATCTTCCA
JMSF035M07+ CCTCATACTTCTCAAGAAGTGAAGTAACAGCGGTCAAACTCATTGATATGACATCCTCCA
JMSF034E07+ CCTCATACTTCTCAAGAAGTGAAGTAACAGCGGTCAAACTCATTGATATGACATCCTCCA
____________________________________________________________
consensus CTTCATACTTCTCAAGAAGTGAAGTAACAGCTGTTAAACTCATTGATATGACATCTTCCA
. : . : . : . : . : . :
JMSF022P11+ CCTCACCGCAGAAAGCCANGCAATCCTGACCAAGGCCAATTGTGTATTTCCCTTTGCTTG
JMSF033N14+ CCTCACCGCAGAAAGCCANGCAATCNTGACCAAGGCCAATTGTGTATTTCCCTTTGCTTG
JMSF035M07+ CCTCACTGCAGAAGGCCATGCAATCTTGACCAAGACCAATTGTGTATTTCCCTTTGCTGG
JMSF034E07+ CCTCACTGCAGAAGGCCATGCAATCTTGACCAAGACCAATTGTGTATTTCCCTTTGCTGG
____________________________________________________________
consensus CCTCACTGCAGAAGGCCATGCAATCTTGACCAAGGCCAATTGTGTATTTCCCTTTGCTTG
. : . : . : . : . : . :
JMSF022P11+ CTCCATCATGAGCCTCCAATGCTTCCTGCTGGAGGCAAGCGGGAGGGAAGTAAATCTCGA
JMSF033N14+ CTCCATCATGAGCCTCCAATGCTTCCTGCTGGAGGCAAGCGGGAGGGAAGTAAATCTCGA
JMSF035M07+ CTCCATCATGAGCCTCCAATGCTTCCTGCTGGAGGCAGGTGGGAGGGAAGTAAATCTCGA
JMSF034E07+ CTCCATCATGAGCCTCCAATGCTTCCTGCTGGAGGCAGGTGGGAGGGAAGTAAATCTCGA
____________________________________________________________
consensus CTCCATCATGAGCCTCCAATGCTTCCTGCTGGAGGCAGGTGGGAGGGAAGTAAATCTCGA
. : . : . : . : . : . :
JMSF022P11+ GGGCAAGAATTCNGACATTNTTNTGCTCAGAAGCCATTT
JMSF033N14+ GGGCAAGAATTCNGACATTNTTNTGCTCAGAAGCCATTT
JMSF035M07+ GAGCGAGGATTCCGACATTCTTCTGCTGAGACGCCATTTAAGGTTCCGAGAAAGCAACAA
JMSF034E07+ GAGCGAGGATTCCGACATTCTTCTGCTGAGACGCCATTTAAGGTTCCGAGAAAGCAACAA
____________________________________________________________
consensus GGGCGAGGATTCCGACATTCTTCTGCTGAGACGCCATTTAAGGTTCCGAGAAAGCAACAA
. : . : . : . : . : . :
JMSF035M07+ CCGAACGGCGAACGGCGAACGGATCGAAACAACGACAGAAGATGATGAGACAGCGGCCGC
JMSF034E07+ CCGAACGGCGAACGGCGAACGGATCGAAACAACGACAGAAGATGATGAGACAGCGGCCGC
____________________________________________________________
consensus CCGAACGGCGAACGGCGAACGGATCGAAACAACGACAGAAGATGATGAGACAGCGGCCGC
. : . : . : . : . : . :
JMSF035M07+ ACGTTTCCCTCTCCCTCGGTACACTCGCCGGCAGGACGTCGATGAAGGAGAGAGAAAAGG
JMSF034E07+ ACGTTTCCCTCTCCCTCGGTACACTCGCCGGCAGGACGTCGATGAAGGAGAGAGAAAAGG
____________________________________________________________
consensus ACGTTTCCCTCTCCCTCGGTACACTCGCCGGCAGGACGTCGATGAAGGAGAGAGAAAAGG
. : . : . : . : . : . :
JMSF035M07+ AAGAATGGAGTACTGGAAATTCGGAGAGAGCAGAGCAGAGCAGAGGAGAAGAAGAGCGAG
JMSF034E07+ AAGAATGGAGTACTGGAAATTCGGAGAGAGCAGAGCAGAGCAGAGGAGAAGAAGAGCGAG
____________________________________________________________
consensus AAGAATGGAGTACTGGAAATTCGGAGAGAGCAGAGCAGAGCAGAGGAGAAGAAGAGCGAG
. : . : . : . : . : . :
JMSF035M07+ TCCACTCAGTGAGTTGGTGAATTGGAAAC
JMSF034E07+ TCCACTCAGTGAGTTGGTGAATTGGAAACTGCGAGTTGATGGCTCTCCCCGCTATGTATA
____________________________________________________________
consensus TCCACTCAGTGAGTTGGTGAATTGGAAACTGCGAGTTGATGGCTCTCCCCGCTATGTATA
. : . : . : . : . : . :
JMSF034E07+ TATATAGCGCCAAGGAATGAGTTCGCCATCCATTCCCCTCTTTCCAGCCCTCAAATGCCA
____________________________________________________________
consensus TATATAGCGCCAAGGAATGAGTTCGCCATCCATTCCCCTCTTTCCAGCCCTCAAATGCCA