Contig 009436:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF025B04-                                                    TTTTGTTTGTTTTTTATA
                      ____________________________________________________________
consensus                                                       TTTTGTTTGTTTTTTATA
 
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rJMFF025B04-          CTAATTCAAATCACAACCAACCAAATCCATAACAGCATGTTTGGTTGGGGTGCAATTCCT
rJMSF023H21-                                         ACAGCATGTTTGGTTGGGGTGCAATTCCT
                      ____________________________________________________________
consensus             CTAATTCAAATCACAACCAACCAAATCCATAACAGCATGTTTGGTTGGGGTGCAATTCCT
 
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rJMFF025B04-          TTCCCCCAAAGTTTATTTAAACAGTGGTCTCAGGATTCAGGAAATGTAATACACAAG-TT
rJMSF033G04-                                AGTGGTCTCAGGATTCAGGAAATGTAATACACAAGCTT
rJMSF023H21-          TTCCCCCAAAGTTTATTTAAACAGTGGTCTCAGGATTCAGGAAATGTAATACACAAG-TT
                      ____________________________________________________________
consensus             TTCCCCCAAAGTTTATTTAAACAGTGGTCTCAGGATTCAGGAAATGTAATACACAAG-TT
 
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rJMFF025B04-          TTCTGAGAAACTTTTAGACACTCTCCCCCCACCTGCTTGTTCACCACT-GTCACGGGATC
rJMSF033G04-          TTCTGAGAAACTTTTAGACACTCTCCCCCCACCTGCTTGTTCACCACTGGTCACGGGATC
rJMSF023H21-          TTCTGAGAAACTTTTAGACACTCTCCCCCCACCTGCTTGTTCACCACT-GTCACGGGATC
                      ____________________________________________________________
consensus             TTCTGAGAAACTTTTAGACACTCTCCCCCCACCTGCTTGTTCACCACT-GTCACGGGATC
 
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rJMFF025B04-          TCAGTCTGCCCGGGCCTTAACACATTCTTATGACTAAAATTATGCATCCATACTGTATTT
rJMSF033G04-          TCAGTCTGCCCGGGCCTTAACACATTCTTATGACTAAAATTATGCATCCATACTGTATTT
rJMSF023H21-          TCAGTCTGCCCGGGCCTTAACACATTCTTATGACTAAAATTATGCATCCATACTGTATTT
                      ____________________________________________________________
consensus             TCAGTCTGCCCGGGCCTTAACACATTCTTATGACTAAAATTATGCATCCATACTGTATTT
 
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rJMFF025B04-          AGAACAGGTAAACTACTATAACAGTAATGCATATTCTAGCAAGCTGGTAAATATGGTGCC
rJMSF033G04-          AGAACAGGTAAACTACTATAACAGTAATGCATATTCTAGCAAGCTGGTAAATATGGTGCC
rJMSF023H21-          AGAACAGGTAAACTACTATAACAGTAATGCATATTCTAGCAAGCTGGTAAATATGGTGCC
                      ____________________________________________________________
consensus             AGAACAGGTAAACTACTATAACAGTAATGCATATTCTAGCAAGCTGGTAAATATGGTGCC
 
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rJMFF025B04-          CGTTGAAAGGGAGTTATGCATATACCAAAGGCTCAAAAGCTTATTTTAGTTTTTACTTGT
rJMSF033G04-          CGTTGAAAGGGAGTTATGCATATACCAAAGGCTCAAAAGCTTATTTTAGTTTTTACTTGT
rJMSF023H21-          CGTTGAAAGGGAGTTATGCATATACCAAAGGCTCAAAAGCTTATTTTAGTTTTTACTTGT
                      ____________________________________________________________
consensus             CGTTGAAAGGGAGTTATGCATATACCAAAGGCTCAAAAGCTTATTTTAGTTTTTACTTGT
 
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rJMFF025B04-          ATGGGCTTGATGTCAGCCTGAAAGCTTGTTCGGTTCGGTTGTTCCCCGGGCAATATACAA
rJMSF033G04-          ATGGGCTTGATGTCAGCCTGAAAGCTTGTTCGGTTCGGTTGTTCCCCGGGCAATATACAA
rJMSF023H21-          ATGGGCTTGATGTCAGCCTGAAAGCTTGTTCGGTTCGGTTGTTCCCCGGGCAATATACAA
                      ____________________________________________________________
consensus             ATGGGCTTGATGTCAGCCTGAAAGCTTGTTCGGTTCGGTTGTTCCCCGGGCAATATACAA
 
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rJMFF025B04-          CTTGTATGGAGCCAGTATGTGTCATGCTGAGATTGTTGAGGTTATGGTTCGGTGTTGGGC
rJMSF033G04-          CTTGTATGGAGCCAGTATGTGTCATGCTGAGATTGTTGAGGTTATGGTTCGGTGTTGGGC
rJMSF023H21-          CTTGTATGGAGCCAGTATGTGTCATGCTGAGATTGTTGAGGTTATGGTTCGGTGTTGGGC
                      ____________________________________________________________
consensus             CTTGTATGGAGCCAGTATGTGTCATGCTGAGATTGTTGAGGTTATGGTTCGGTGTTGGGC
 
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rJMFF025B04-          AGCCTGCTGAGTACAGAGTGCTCGGGTTTGTGATCACATTCGTAATCAATATGAACAAAA
rJMSF033G04-          AGCCTGCTGAGTACAGAGTGCTCGGGTTTGTGATCACATTCGTAATCAATATGAACAAAA
rJMSF023H21-          AGCCTGCTGAGTACAGAGTGCTCGGGTTTGTGATCACATTCGTAATCAATATGAACAAAA
                      ____________________________________________________________
consensus             AGCCTGCTGAGTACAGAGTGCTCGGGTTTGTGATCACATTCGTAATCAATATGAACAAAA
 
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rJMFF025B04-          GCTCGTTCTACTTCAGGGAGTTTCTCGATCTTTATCTGTAGAGTCTCTCCTATAGTGTGA
rJMSF033G04-          GCTCGTTCTACTTCAGGGAGTTTCTCGATCTTTATCTGTAGAGTCCCTCCTATAGTGTGA
rJMSF023H21-          GCTCGTTCTACTTCAGGGAGTTTCTCGATCTTTATCTGTAGAGTCTCTCCTATAGTGTGA
                      ____________________________________________________________
consensus             GCTCGTTCTACTTCAGGGAGTTTCTCGATCTTTATCTGTAGAGTCTCTCCTATAGTGTGA
 
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rJMFF025B04-          GATTCTTTCAAGGGCAAATCTTCAGGGAGTTCAATATCGACCTCAACAAAGTACAAGACA
rJMSF033G04-          GATTCTTTCAAGGGCAAATCTTCAGGGAGTTCAATATCGACCTCAACAAAGTACAAGACA
rJMSF023H21-          GATTCTTTCAAGGGCAAATCTTCAGGGAGTTCAATATCGACCTCAACAAAGTACAAGACA
JMSF023H21+                                                  ACCTCAACAAAGTACAAGACA
                      ____________________________________________________________
consensus             GATTCTTTCAAGGGCAAATCTTCAGGGAGTTCAATATCGACCTCAACAAAGTACAAGACA
 
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rJMFF025B04-          CCAAAGGTATATGCTCGGACTGTGTCAACGCGTTTGACTTTAGGGTGCTGCACGACTANA
rJMSF033G04-          CCAAAGGTATATGCTCGGACTGTGTCAACGCGTTTGACTTTAGGGTGCTGCACGACTAGA
rJMSF023H21-          CCAAAGGTATATGCTCGGACTGTGTCAACGCGTTTGACTTTAGGGTGCTGCACGACTAGA
JMSF023H21+           CCAAAGGTATATGCTCGGACTGTGTCAACGCGTTTGACTTTAGGGTGCTGCACGACTAGA
                      ____________________________________________________________
consensus             CCAAAGGTATATGCTCGGACTGTGTCAACGCGTTTGACTTTAGGGTGCTGCACGACTAGA
 
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rJMFF025B04-          TATGTTAACTTCTGCAATACTTCGGGAGGGGCTGATCGTCCTACTAGTGATGCTGCATT 
rJMSF033G04-          TATGTTAACTTCTGCAATACTTCGGGAGGGGCTGATCGTCCTACTAGTGATGCTGCATT 
rJMSF023H21-          TATGTTAACTTCTGCAATACTTCGGGAGGGGCTGATCGTCCTACTAGTGATGCTGCATT 
JMSF023H21+           TATGTTAACTTCTGCAATACTTCGGGAGGGGCTGATCGTCCTACTAGTGATGCTGCATTC
                      ____________________________________________________________
consensus             TATGTTAACTTCTGCAATACTTCGGGAGGGGCTGATCGTCCTACTAGTGATGCTGCATTC
 
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JMSF023H21+           TCTAGGACAGTTCCAGACCAATTTGTGATTGTGTAAATTGCAAGGATAATGGCCCCAGTG
                      ____________________________________________________________
consensus             TCTAGGACAGTTCCAGACCAATTTGTGATTGTGTAAATTGCAAGGATAATGGCCCCAGTG
 
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JMSF023H21+           GGATCAATCCACCAGTAAAATTTATCTCCAAGTACAGCAGCTAACAATCCTACTAGATTT
                      ____________________________________________________________
consensus             GGATCAATCCACCAGTAAAATTTATCTCCAAGTACAGCAGCTAACAATCCTACTAGATTT
 
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JMSF023H21+           GTGACAACATCAAAATAATGATCCTTTGCATAGGCTTTAACAATGTCATTCCCTGAACTT
                      ____________________________________________________________
consensus             GTGACAACATCAAAATAATGATCCTTTGCATAGGCTTTAACAATGTCATTCCCTGAACTT
 
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JMSF023H21+           CTACAGTAGATCCAAAGACAAAGTTTTACCACAGTGGCAGTTATCATGATGCTATACAGC
                      ____________________________________________________________
consensus             CTACAGTAGATCCAAAGACAAAGTTTTACCACAGTGGCAGTTATCATGATGCTATACAGC
 
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JMSF023H21+           CATGCCAGTTGATCTGAGGTCATTTTATCAGAAGGTGCATGTTGAATAAGTTTTTCTACA
                      ____________________________________________________________
consensus             CATGCCAGTTGATCTGAGGTCATTTTATCAGAAGGTGCATGTTGAATAAGTTTTTCTACA
 
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JMSF023H21+           GCCTGAATCAATACCTGAAAACCCAGTGTAGCCATGACTGCAGCAAAGATAATAATGCCT
JMFF025B04+                                             TGACTGCAGCAAAGATAATAATGCCT
                      ____________________________________________________________
consensus             GCCTGAATCAATACCTGAAAACCCAGTGTAGCCATGACTGCAGCAAAGATAATAATGCCT
 
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JMSF023H21+           ACTGGCTGCATTCTCAGTTTCTCAATAGGATATTTATAGATATTAACACTTTTCATTGAT
JMFF025B04+           ACTGGCTGCATTCTCAGTTTCCCAATAGGATATTTATAGATATTAACACTTTTCATTGAT
                      ____________________________________________________________
consensus             ACTGGCTGCATTCTCAGTTTCTCAATAGGATATTTATAGATATTAACACTTTTCATTGAT
 
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JMSF023H21+           AAGTGAGTTAGCCATAATATACCACCAGCCATGAGATCAAGTAAGGAATCCAATGTTGAT
JMFF025B04+           AAGTGAGTTAGCCATAATATACCACCAGCCATGAGATCAAGTAAGGAATCCAATGTTGAT
JMSF033G04+              TGAGTTAGCCATAATATACCACCAGCCATGAGATCAAGTAAGGAATCCAATGTTGAT
                      ____________________________________________________________
consensus             AAGTGAGTTAGCCATAATATACCACCAGCCATGAGATCAAGTAAGGAATCCAATGTTGAT
 
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JMSF023H21+           GCAGCAATGGCTATGGATCCACTTCTTACTGTAGCATAGA                    
JMFF025B04+           GCAGCAATGGCTATGGATCCACTTCTTACTGTAGCATAGATCTTAAGAACCAGTAGTATT
JMSF033G04+           GCAGCAANGGCTATGGATCCACTTCTTACTGTAGCATAGATCTTAAGAACCAGTAGTATT
                      ____________________________________________________________
consensus             GCAGCAATGGCTATGGATCCACTTCTTACTGTAGCATAGATCTTAAGAACCAGTAGTATT
 
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JMFF025B04+           ATATTTGCATAATTAGAAATCTTCATTGCTCTCTCATGTTGGGCTTGTTCCTCAAGATCT
JMSF033G04+           ATATTTGCATAATTAGAAATCTTCATTGCTCTCTCATGTTGGGCTTGTTCCTCAAGATCT
                      ____________________________________________________________
consensus             ATATTTGCATAATTAGAAATCTTCATTGCTCTCTCATGTTGGGCTTGTTCCTCAAGATCT
 
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JMFF025B04+           TCTTCATCAATGCAGTTAGATGCACTCACAATATCAACACATTCAAACGACTTTAGGGTT
JMSF033G04+           TCTTCATCAATGCAGTTAGATGCACTCACAATATCAACACATTCAAACGACTTTAGGGTT
                      ____________________________________________________________
consensus             TCTTCATCAATGCAGTTAGATGCACTCACAATATCAACACATTCAAACGACTTTAGGGTT
 
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JMFF025B04+           GCAAATTGTCTTTCATAATATTCTTTTTCTCCTTTCGTTAAAGTAGAGGATTTGGAGAGG
JMSF033G04+           GCAAATTGTCTTTCATAATATTCTTTTTCTCCTTTCGTTAAAGTAGAGGATTTGGAGAGG
                      ____________________________________________________________
consensus             GCAAATTGTCTTTCATAATATTCTTTTTCTCCTTTCGTTAAAGTAGAGGATTTGGAGAGG
 
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JMFF025B04+           TCAACCGGAGAAAAAGACTCAGGATCAATGTAGGAGCGAACCTTGTCCGGTAGCCGAGCC
JMSF033G04+           TCAACCGGAGAAAAAGACTCAGGATCAATGTAGGAGCGAACCTTGTCCGGTAGCCGAGCC
                      ____________________________________________________________
consensus             TCAACCGGAGAAAAAGACTCAGGATCAATGTAGGAGCGAACCTTGTCCGGTAGCCGAGCC
 
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JMFF025B04+           AGGAAATCACTGCGGAGCAACGTAACCGAGTTCCGTCTGGAAATCAGCTGGCTACGCCGG
JMSF033G04+           AGAAAATCACTGCGGAGCAACGTAACCGAGTTCCGTCTGGAAATCAGCTGGCTACGCCGG
                      ____________________________________________________________
consensus             AGGAAATCACTGCGGAGCAACGTAACCGAGTTCCGTCTGGAAATCAGCTGGCTACGCCGG
 
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JMFF025B04+           CCGCTGCCGCCTCCTCCGCCGGACTTCCCGCCGTCCAGCAGCGGCGATTTGACGTCCATG
JMSF033G04+           CCGCTGCCGCCTCCTCCGCCGGACTTCCCGCCGTCCAGCAGCGGCGATTTGACGTCCATG
                      ____________________________________________________________
consensus             CCGCTGCCGCCTCCTCCGCCGGACTTCCCGCCGTCCAGCAGCGGCGATTTGACGTCCATG
 
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JMFF025B04+           TCAGCCTCACTGCTCGCCATTCTCA                                   
JMSF033G04+           TCAGCCTCACTGCTCGCCATTCTCACCGTTCCGACTCAATTCAATCTCATCCGCCGAACC
                      ____________________________________________________________
consensus             TCAGCCTCACTGCTCGCCATTCTCACCGTTCCGACTCAATTCAATCTCATCCGCCGAACC
 
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JMSF033G04+           ACAAAATTATATAGAAACGAAGCAGCTCTTATCCCATAATCATTTTTTTTTATCACATAA
                      ____________________________________________________________
consensus             ACAAAATTATATAGAAACGAAGCAGCTCTTATCCCATAATCATTTTTTTTTATCACATAA
 
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JMSF033G04+           TCATTTTAAATTGATAAATTAGATGATTATTCAATATTGATTCAAGTAAATTTATATTCC
                      ____________________________________________________________
consensus             TCATTTTAAATTGATAAATTAGATGATTATTCAATATTGATTCAAGTAAATTTATATTCC
 
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JMSF033G04+           ATAATCTGAATTTTCGCGGTAGTATTTGTAATTCTGTTTGCTATTGACTTTTGGTCCCCA
                      ____________________________________________________________
consensus             ATAATCTGAATTTTCGCGGTAGTATTTGTAATTCTGTTTGCTATTGACTTTTGGTCCCCA