Contig 009435:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN034P06Sequence605009435 (3)ref|XP_009604653.1|6e-64PREDICTED: sporulation protein RMD1 [Nicotiana tomentosiformis]
JMSF033C19Sequence681009435 (3)ref|XP_009604653.1|1e-53PREDICTED: sporulation protein RMD1 [Nicotiana tomentosiformis]786009435 (3)ref|XP_006340540.1|431PREDICTED: uncharacterized protein LOC102578930 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF033C19-                          CAGTGCGTAAAAAATTACAACTCACATTTCTAATACTACTACTT
                      ____________________________________________________________
consensus                             CAGTGCGTAAAAAATTACAACTCACATTTCTAATACTACTACTT
 
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rJMSF033C19-          GGAAGACTATAGAGACTTGTGGGCTATGTCATAAACAGATATAAGGATTTCTGCCCCTAT
                      ____________________________________________________________
consensus             GGAAGACTATAGAGACTTGTGGGCTATGTCATAAACAGATATAAGGATTTCTGCCCCTAT
 
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rJMSF033C19-          CAGTATGATTATGAGCCATTCCAGGAAATCTGACTTTCTATTCTGAAGAATTTCTTGAAG
                      ____________________________________________________________
consensus             CAGTATGATTATGAGCCATTCCAGGAAATCTGACTTTCTATTCTGAAGAATTTCTTGAAG
 
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rJMSF033C19-          AAAACGTATATTATGCTCGACAAATTTCAACTTGAAATCTAGGCTGGCAAATCTCTGAGT
                      ____________________________________________________________
consensus             AAAACGTATATTATGCTCGACAAATTTCAACTTGAAATCTAGGCTGGCAAATCTCTGAGT
 
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rJMSF033C19-          CAGCTCGAATTCATCTCTAAGATATTCCCAGATCTGAGCATATTTAGCATCTTTCCATGC
                      ____________________________________________________________
consensus             CAGCTCGAATTCATCTCTAAGATATTCCCAGATCTGAGCATATTTAGCATCTTTCCATGC
 
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rJMSF033C19-          AATGTCCGATCTTTCAAAAAGTCCAAGTTTAAGAATCACATCAGCAAGATTAGAATTTGC
                      ____________________________________________________________
consensus             AATGTCCGATCTTTCAAAAAGTCCAAGTTTAAGAATCACATCAGCAAGATTAGAATTTGC
 
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rJMSF033C19-          CTTTCCAACCAACTGGAAAAGCTTTTTACGCTCCATTGTAAAAGTGCCAGTTTTTTCCAT
                      ____________________________________________________________
consensus             CTTTCCAACCAACTGGAAAAGCTTTTTACGCTCCATTGTAAAAGTGCCAGTTTTTTCCAT
 
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rJMSF033C19-          TCCTCGATTGATATCTGTAAATTCTCCAACCATTCCATCAACTTGGCGCACATAGTAATC
                      ____________________________________________________________
consensus             TCCTCGATTGATATCTGTAAATTCTCCAACCATTCCATCAACTTGGCGCACATAGTAATC
 
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rJMSF033C19-          AAGAGCAATACTTTGACCAAGAACACTGCCAATGGTACGGATGCCATCAATATTCAAATA
                      ____________________________________________________________
consensus             AAGAGCAATACTTTGACCAAGAACACTGCCAATGGTACGGATGCCATCAATATTCAAATA
 
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rJMSF033C19-          CTGCAACATAATGTAGTCTAGTCCACCTTGCATCCAGGTACTTAAAGTTGGCTGCTCTCT
                      ____________________________________________________________
consensus             CTGCAACATAATGTAGTCTAGTCCACCTTGCATCCAGGTACTTAAAGTTGGCTGCTCTCT
 
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rJMSF033C19-          GACCTCATACTCATCCTTTCTCATCTCAGGCAATAAACCAGAAGAATGTTTTTCAACAAT
                      ____________________________________________________________
consensus             GACCTCATACTCATCCTTTCTCATCTCAGGCAATAAACCAGAAGAATGTTTTTCAACAAT
 
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rJMSF033C19-          TTTTAGATACCCATCAACTTCATGATCACGGACATTGAACAAGACAATTGAACCATACTG
JMFN034P06+           TTTTAGATACCCATCAACTTCATGATCACGGACATTGAACAAGACAATTGAACCATACTG
JMSF033C19+                                                  CAAGACAATTGAACCATACTG
                      ____________________________________________________________
consensus             TTTTAGATACCCATCAACTTCATGATCACGGACATTGAACAAGACAATTGAACCATACTG
 
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rJMSF033C19-          AAAAACCACCATATAACAGCAGTCACTGCCAC-TNAACCAGAACCCAAAACATTAGGATC
JMFN034P06+           AAAAACCACCATATAACAGCAGTCACTGCCACTTAAACCAGAACCCAAAACATTAGGATC
JMSF033C19+           AAAAACCACCATATAACAGCAGTCACTGCCACTTAAACCAGAACCCAAAACATTAGGATC
                      ____________________________________________________________
consensus             AAAAACCACCATATAACAGCAGTCACTGCCACTTAAACCAGAACCCAAAACATTAGGATC
 
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rJMSF033C19-          TGGTTTAGTATAACCAAATCTTA                                     
JMFN034P06+           TGGTTTAGTATAACCAAATCTTAAAACAACATAATTGGTCATCCGTGATGTTGGGGGAAT
JMSF033C19+           TGGTTTAGTATAACCAAATCTTAAAACAACATAATTGGTCATCCGTGATGTTGGGGGAAT
                      ____________________________________________________________
consensus             TGGTTTAGTATAACCAAATCTTAAAACAACATAATTGGTCATCCGTGATGTTGGGGGAAT
 
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JMFN034P06+           GAAATTCTCCTTGTTCTGATCCACCAAGCTCCTTAAATCCACACTGGTGGAGAAGAAAAA
JMSF033C19+           GAAATTCTCCTTGTTCTGATCCACCAAGCTCCTTAAATCCACACTGGTGGAGAAGAAAAA
                      ____________________________________________________________
consensus             GAAATTCTCCTTGTTCTGATCCACCAAGCTCCTTAAATCCACACTGGTGGAGAAGAAAAA
 
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JMFN034P06+           AGCCCTAACAGGAATAGAAGGCAGAGCAGCAGAGACAACAGCACCATCATACTCATCCTC
JMSF033C19+           AGCCCTAACAGGAATAGAAGGCAGAGCAGCAGAGACAACAGCACCATCATACTCATCCTC
                      ____________________________________________________________
consensus             AGCCCTAACAGGAATAGAAGGCAGAGCAGCAGAGACAACAGCACCATCATACTCATCCTC
 
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JMFN034P06+           TTTCTCCAAATCCAGCTCATCGGCCTTACTCACTCCTCCATCCCAAGCTTCGGAGCTGGA
JMSF033C19+           TTTCTCCAAATCCAGCTCATCGGCCTTACTCACTCCTCCATCCCAAGCTTCGGAGCTGGA
                      ____________________________________________________________
consensus             TTTCTCCAAATCCAGCTCATCGGCCTTACTCACTCCTCCATCCCAAGCTTCGGAGCTGGA
 
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JMFN034P06+           AATAGCATCATTCCACTCCACCGTATGCGCCGACGACGAAACTGATGAAATACACTTAGC
JMSF033C19+           AATAGCATCGTTCCACTCCACCGTATGCGCCGACGACGAAACTGATGAAATACACTTAGC
                      ____________________________________________________________
consensus             AATAGCATCGTTCCACTCCACCGTATGCGCCGACGACGAAACTGATGAAATACACTTAGC
 
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JMFN034P06+           CAAGCCAAAATTAGGGCTCCGTCCAGTGCGAAGCAACCCGTAGCCGGCGGCTGCCGTGGT
JMSF033C19+           CAAGCCAAAATTAGGGCTCCGTCCAGTGCGAAGCAACCCGTAGCCGGCGGCTGCCGTGGT
                      ____________________________________________________________
consensus             CAAGCCAAAATTAGGGCTCCGTCCAGTGCGAAGCAACCCGTAGCCGGCGGCTGCCGTGGT
 
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JMFN034P06+           CGAAAACTGAGAGTCGCGGCGGAGGACGGGGGTAAAAAGGAGAGCAATAGGCTTAGAGTG
JMSF033C19+           CGAAAACTGAGAGTCGCGGCGGAGGACGGGGGTAAAAAGGAGAGCAATAGGCTTAGAGTG
                      ____________________________________________________________
consensus             CGAAAACTGAGAGTCGCGGCGGAGGACGGGGGTAAAAAGGAGAGCAATAGGCTTAGAGTG
 
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JMFN034P06+           TGGCGGCGAAATGGGATGGTGGAGTGGAAGAGCGTGGGATGTGAGGGGGTGCGGTTTGG 
JMSF033C19+           TGGCGGCGAAATGGGATGGTGGAGTGGAAGAGCGTGGGATGTGAGGGGGTGCGGTTTGGC
                      ____________________________________________________________
consensus             TGGCGGCGAAATGGGATGGTGGAGTGGAAGAGCGTGGGATGTGAGGGGGTGCGGTTTGGC
 
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JMSF033C19+           GGCGAGAGTGAAGAGAGTACGGAGAAGTCCGGCGTCGACGCCGAGGAGAGCGCGGTGGGC
                      ____________________________________________________________
consensus             GGCGAGAGTGAAGAGAGTACGGAGAAGTCCGGCGTCGACGCCGAGGAGAGCGCGGTGGGC
 
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JMSF033C19+           GCCGTGTCCCCACGCCGTCCTCATAGTCACCTTCATCCTCATCGTTGCCGCATTGGCTTC
                      ____________________________________________________________
consensus             GCCGTGTCCCCACGCCGTCCTCATAGTCACCTTCATCCTCATCGTTGCCGCATTGGCTTC