| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009D23 | Sequence | 589 | 009432 (6) | ref|XP_009610992.1| | 255 | PREDICTED: uncharacterized protein LOC104104567 [Nicotiana tomentosiformis] | 584 | 009432 (6) | ref|XP_009610992.1| | 230 | PREDICTED: uncharacterized protein LOC104104567 [Nicotiana tomentosiformis] |
| JMFF027L23 | Sequence | 587 | 009432 (6) | ref|XP_009610992.1| | 253 | PREDICTED: uncharacterized protein LOC104104567 [Nicotiana tomentosiformis] | 722 | 009432 (6) | ref|XP_009610992.1| | 277 | PREDICTED: uncharacterized protein LOC104104567 [Nicotiana tomentosiformis] |
| JMSF033A13 | Sequence | 690 | 009432 (6) | ref|XP_009610992.1| | 221 | PREDICTED: uncharacterized protein LOC104104567 [Nicotiana tomentosiformis] | 739 | 009432 (6) | ref|XP_009610992.1| | 221 | PREDICTED: uncharacterized protein LOC104104567 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF009D23- ATTATTAACAAACATGTAACC
rJMFF027L23- TCTATCATTATTAACAAACATGTAACC
____________________________________________________________
consensus TCTATCATTATTAACAAACATGTAACC
. : . : . : . : . : . :
rJMFF009D23- ATATTTTACAGTACAGAAAATAACAAGTGCTCCAAATACTAGAGCAAAAAAGTAGAAAGA
rJMFF027L23- ATATTTTACAGTACAGAAAATAACAAGTGCTCCAAATACTAGAGCAAAAAAGTAGAAAGA
rJMSF033A13- ATATTTTACAGTACAGAAAATAACAAGTGCTCCAAATACTAGAGCAAAAAAGTAGAAAGA
____________________________________________________________
consensus ATATTTTACAGTACAGAAAATAACAAGTGCTCCAAATACTAGAGCAAAAAAGTAGAAAGA
. : . : . : . : . : . :
rJMFF009D23- ACCAACCTCTTACGGTGAAGTTTACTGATTCTTTTTTGCCTTAGAAACAAAAGAAGTGGA
rJMFF027L23- ACCAACCTCTTACGGTGAAGTTTACTGATTCTTTTTTGCCTTAGAAACAAAAGAAGTGGA
rJMSF033A13- ACCAACCTCTTACGGTGAAGTTTACTGATTCTTTTTTGCCTTAGAAACAAAAGAAGTGGA
JMSF033A13+ TCTTTTTTGCCTTAGAAACAAAAGAAGTGGA
____________________________________________________________
consensus ACCAACCTCTTACGGTGAAGTTTACTGATTCTTTTTTGCCTTAGAAACAAAAGAAGTGGA
. : . : . : . : . : . :
rJMFF009D23- TCTTCGATCTAAACTAGTAGTTCTAACAATGAAAAGAAGTGTTTCTACAAGCATGCCAAC
rJMFF027L23- TCTTCGATCTAAACTAGTAGTTCTAACAATGAAAAGAAGTGTTTCTACAAGCATGCCAAC
rJMSF033A13- TCTTCGATCTAAACTAGTAGTTCTAACAATGAAAAGAAGTGTTTCTACAAGCATGCCAAC
JMSF033A13+ TCTTCGATCTAAACTAGTAGTTCTAACAATGAAAAGAAGTGTTTCTACAAGCATGCCAAC
____________________________________________________________
consensus TCTTCGATCTAAACTAGTAGTTCTAACAATGAAAAGAAGTGTTTCTACAAGCATGCCAAC
. : . : . : . : . : . :
rJMFF009D23- AACCAGTCCAAGGATGCCACCAGCAGCACTCATTGCAGGACTGTGACTAAATAAAGCCTT
rJMFF027L23- AACCAGTCCAAGGATGCCACCAGCAGCACTCATTGCAGGACTGTGACTAAATAAAGCCTT
rJMSF033A13- AACCAGTCCAAGGATGCCACCAGCAGCACTCATTGCAGGACTGTGACTAAATAAAGCCTT
JMFF027L23+ AGGATGCCACCAGCAGCACTCATTGCAGGACTGTGACTAAATAAAGCCTT
JMFF009D23+ CAAGGATGCCACCAGCAGCACTCATTGCAGGACTGTGACTAAATAAAGCCTT
JMSF033A13+ AACCAGTCCAAGGATGCCACCAGCAGCACTCATTGCAGGACTGTGACTAAATAAAGCCTT
____________________________________________________________
consensus AACCAGTCCAAGGATGCCACCAGCAGCACTCATTGCAGGACTGTGACTAAATAAAGCCTT
. : . : . : . : . : . :
rJMFF009D23- GAATGCAGCATATCCAACCAAAAAGCCAGTGAACATTATAAGAACAACGTGCATGCCAAA
rJMFF027L23- GAATGCAGCATATCCAACCAAAAAGCCAGTGAACATTATAAGAACAACGTGCATGCCAAA
rJMSF033A13- GAA-GCAGCATATCCAACCAAAAAGCCAGTGAACATTATAAGAACAACGTGCATGCCAAA
JMFF027L23+ GAATGCAGCATATCCAACCAAAAAGCCAGTGAACATTATAAGAACAACGTGCATGCCAAA
JMFF009D23+ GAATGCAGCATATCCAACCAAAAAGCCAGTGAACATTATAAGAACAACGTGCATGCCAAA
JMSF033A13+ GAA-GCAGCATATCCAACCAAAAAGCCAGTGAACATTATAAGAACAACGTGCATGCCAAA
____________________________________________________________
consensus GAATGCAGCATATCCAACCAAAAAGCCAGTGAACATTATAAGAACAACGTGCATGCCAAA
. : . : . : . : . : . :
rJMFF009D23- GCCTAATTGATCCTTGTAAGAAGAGAAAGGCTCTTCAACTTTCTTCTTGGGGGTTATGTC
rJMFF027L23- GCCTAATTGATCCTTGTAAGAAGAGAAAGGCTCTTCAACTTTCTTCTTGGGGGTTATGTC
rJMSF033A13- GCCTAATTGATCCTTGTAAGAAGAGAAAGGCTCTTCAACTTTCTTCTTGGGGGTTATGTC
JMFF027L23+ GCCTAATTGATCCTTGTAAGAAGAGAAAGGCTCTTCAACTTTCTTCTTGGGGGTTATGTC
JMFF009D23+ GCCTAATTGATCCTTGTAAGAAGAGAAAGGCTCTTCAACTTTCTTCTTGGGGGTTATGTC
JMSF033A13+ GCCTAATTGATCCTTGTAAGAAGAGAAAGGCTCTTCAACTTTCTTCTTGGGGGTTATGTC
____________________________________________________________
consensus GCCTAATTGATCCTTGTAAGAAGAGAAAGGCTCTTCAACTTTCTTCTTGGGGGTTATGTC
. : . : . : . : . : . :
rJMFF009D23- CTTCACCAATTCCTCATAGGCTTTCCTCTCGGATGCCTCCGCCAGTTTCCTTAGGCGAGC
rJMFF027L23- CTTCACCAATTCCTCATAGGCTTTCCTCTCGGATGCCTCCGCCAGTTTCCTTAGGCGAGC
rJMSF033A13- CTTCACCAATTCCTCATAGGCTTTCCTCTCGGATGCCTCCGCCAGTTTCCTTAGGCGAGC
JMFF027L23+ CTTCACCAATTCCTCATAGGCTTTCCTCTCGGATGCCTCCGCCAGTTTCCTTAGGCGAGC
JMFF009D23+ CTTCACCAATTCCTCATAGGCTTTCCTCTCGGATGCCTCCGCCAGTTTCCTTAGGCGAGC
JMSF033A13+ CTTCACCAATTCCTCATAGGCTTTCCTCTCGGATGCCTCCGCCAGTTTCCTTAGGCGAGC
____________________________________________________________
consensus CTTCACCAATTCCTCATAGGCTTTCCTCTCGGATGCCTCCGCCAGTTTCCTTAGGCGAGC
. : . : . : . : . : . :
rJMFF009D23- CTTCAATTCCTCGCTCTTCTCTCTGGGCTTAGGGCTTGAGAACGCGAATCCGGATCCGCA
rJMFF027L23- CTTCAATTCCTCGCTCTTCTCTCTGGGCTTAGGGCTTGAGAACGCGAATCCGGATCCGCA
rJMSF033A13- CTTCAATTCCTCGCTCTTCTCTCTGGGCTTAGGGCTTGAGAACGCGAATCCGGATCCGCA
JMFF027L23+ CTTCAATTCCTCGCTCTTCTCTCTGGGCTTAGGGCTTGAGAACGCGAATCCGGATCCGCA
JMFF009D23+ CTTCAATTCCTCGCTCTTCTCTCTGGGCTTAGGGCTTGAGAACGCGAATCCGGATCCGCA
JMSF033A13+ CTTCAATTCCTCGCTCTTCTCTCTGGGCTTAGGGCTTGAGAACGCGAATCCGGATCCGCA
____________________________________________________________
consensus CTTCAATTCCTCGCTCTTCTCTCTGGGCTTAGGGCTTGAGAACGCGAATCCGGATCCGCA
. : . : . : . : . : . :
rJMFF009D23- CAGAAGGGAAACGAGTTGAGGTCTCCTCGACGGGTTCGATCCAATCCAGATGGAGCGCAN
rJMFF027L23- CAGAAGGGAAACGAGTTGAGGTCTTCTCGACGGGTTCGATCCAATCCAGATGGAGCGCAG
rJMSF033A13- CAGAAGGGAAACGAGTTGAGGTCTTCTCGACTGGTTCGATCCAATCCAGATGGAGCGCAG
JMFF027L23+ CAGAAGGGAAACGAGTTGAGGTCTTCTCGACGGGTTCGATCCAATCCAGATGGAGCGCAG
JMFF009D23+ CAGAAGGGAAACGAGTTGAGGTCTCCTCGACGGGTTCGATCCAATCCAGATGGAGCGCAG
JMSF033A13+ CAGAAGGGAAACGAGTTGAGGTCTTCTCGACTGGTTCGATCCAATCCAGATGGAGCGCAG
____________________________________________________________
consensus CAGAAGGGAAACGAGTTGAGGTCTTCTCGACGGGTTCGATCCAATCCAGATGGAGCGCAG
. : . : . : . : . : . :
rJMFF009D23- AGCTCTGTAGGGCACGGAGGCTC
rJMFF027L23- AGCTCTGTAGGGCACGGAGGCTCGCTGAGAGAGTGAGGCGGCGAGGTCTCTCAAGTCCTG
rJMSF033A13- AGCTCTGTAGGGCACGGAGGCTCGCTGAGAGAGTGAGGCGGCGAGGTCTCTCAAGTCCTG
JMFF027L23+ AGCTCTGTAGGGCACGGAGGCTCGCTGAGAGAGTGAGGCGGCGAGGTCTCTCAAGTCCTG
JMFF009D23+ AGCTCTGTAGGGCACGGAGGCTCGCTGAGAGAGTGAGGCGGCGAGGTCTCTCAAGTCCTG
JMSF033A13+ AGCTCTGTAGGGCACGGAGGCTCGCTGAGAGAGTGAGGCGGCGAGGTCTCTCAAGTCCTG
____________________________________________________________
consensus AGCTCTGTAGGGCACGGAGGCTCGCTGAGAGAGTGAGGCGGCGAGGTCTCTCAAGTCCTG
. : . : . : . : . : . :
rJMFF027L23- AGATAGGTTAGCGTCCTGGGTAGATGCGGCGAGAAAGGAATGGATTACATCGGTGGCTGA
rJMSF033A13- AGATAGGTTAGCGTCCTGGGTAGATGCGGCGAGAAAGGAATGGATTACATCGGTGGCTGA
JMFF027L23+ AGATAGGTTAGCGTCCTGGGTAGATGCGGCGAGAAAGGAATGGATTACATCGGTGGCTGA
JMFF009D23+ AGATAGGTTAGCGTCCTGGGTAGATGCGGCGAGAAAGGAATGGATTACATCGGTGGCTGA
JMSF033A13+ AGATAGGTTAGCGTCCTGGGTAGATGCGGCGAGAAAGGAATGGATTACATCGGTGGCTGA
____________________________________________________________
consensus AGATAGGTTAGCGTCCTGGGTAGATGCGGCGAGAAAGGAATGGATTACATCGGTGGCTGA
. : . : . : . : . : . :
rJMFF027L23- TATAACCAGGCCGCCGTCTACCGCTGCCGCAGCGG
rJMSF033A13- TATAACCAGGCCGCCGTCTACCGCTGCCGCAGCGGTGCTCGGAGAAGTCGCGCATTTTGC
JMFF027L23+ TATAACCAGGCCGCCGTCTACCGCTGCCGCAGCGGTGCTCGGAGAAGTCGCGCATTTTGC
JMFF009D23+ TATAACCAGGCCGCCGTCTACCGCTGCCGCAGCGGTGCTCGGAGAAGTCGCGCATTTTGC
JMSF033A13+ TATAACCAGGCCGCCGTCTACCGCTGCCGCAGCGGTGCTCGGAGAAGTCGCGCATTTTGC
____________________________________________________________
consensus TATAACCAGGCCGCCGTCTACCGCTGCCGCAGCGGTGCTCGGAGAAGTCGCGCATTTTGC
. : . : . : . : . : . :
rJMSF033A13- GTCGGCGGCGACCTCCATTT
JMFF027L23+ CTCGGCGGCGACCTCCATTTTTGAAATGTTCTCTTTTGTTTTCTGGTTTTGCAAATC
JMFF009D23+ CTCGGCGGCGACCTCCATTTTTGAAATGTTCTCTTTTGTTTTCTGGTTTTGCAAATC
JMSF033A13+ GTCGGCGGCGACCTCCATTTTTGAAATGTTCTCTTTTGTTTTCTGGTTTTGCAAATCTCA
____________________________________________________________
consensus GTCGGCGGCGACCTCCATTTTTGAAATGTTCTCTTTTGTTTTCTGGTTTTGCAAATCTCA