Contig 009426:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF032G20Sequence689009426 (3)ref|XP_009789629.1|1e-53PREDICTED: probable plastid-lipid-associated protein 11 [Nicotiana sylvestris]717016137gb|KJB06421.1|8e-27hypothetical protein B456_001G175700 [Gossypium raimondii] gb|KJB06425.1| hypoth
JMSF041B15Sequence708009426 (3)ref|XP_009789629.1|1e-115PREDICTED: probable plastid-lipid-associated protein 11 [Nicotiana sylvestris]600009426 (3)ref|XP_006359587.1|5e-86PREDICTED: probable plastid-lipid-associated protein 11-like isoform X1 [Solanu

Alignment

This contig is upended


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rJMSF041B15-                                                               GTACAGG
                      ____________________________________________________________
consensus                                                                  GTACAGG
 
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rJMSF041B15-          AGACCATGTAAGCAGCAGCTAACTGTAATTCTGTTAGCACTATTTCTGCTCTCATATTTG
                      ____________________________________________________________
consensus             AGACCATGTAAGCAGCAGCTAACTGTAATTCTGTTAGCACTATTTCTGCTCTCATATTTG
 
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rJMSF041B15-          TTTATTGGATGTGTTTTCCATATCATTTTCTTTCTATTCAACAAAAAAGAACTTACAAGA
                      ____________________________________________________________
consensus             TTTATTGGATGTGTTTTCCATATCATTTTCTTTCTATTCAACAAAAAAGAACTTACAAGA
 
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rJMSF041B15-          AAACTTATCTACAAAATGAAGAGAACTAGACAAGCCCCAGCTATCACTCTTTCCAATTAT
JMSF041B15+                TATCTACAAAATGAAGAGAACTAGACAAGCCCCAGCTATCACTCTTTCCAATTAT
                      ____________________________________________________________
consensus             AAACTTATCTACAAAATGAAGAGAACTAGACAAGCCCCAGCTATCACTCTTTCCAATTAT
 
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rJMSF041B15-          AAGGTGCACGTTCAACAACCAAGTAGTCTCCCCTAATATCTTTCACAACCCGAATTTCAT
JMSF041B15+           AAGGTGCACGTTCAACAACCAAGTAGTCTCCCCTAATATCTTTCACAACCCGAATTTCAT
                      ____________________________________________________________
consensus             AAGGTGCACGTTCAACAACCAAGTAGTCTCCCCTAATATCTTTCACAACCCGAATTTCAT
 
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rJMSF041B15-          CGTCAAGGTACACTGTGTCAAACCATCCTTGCCCAAATGGTGGCAAAGGGAACTCCCAAC
JMSF041B15+           CGTCAAGGTACACTGTGTCAAACCATCCTTGCCCAAATGGTGGCAAAGGGAACTCCCAAC
                      ____________________________________________________________
consensus             CGTCAAGGTACACTGTGTCAAACCATCCTTGCCCAAATGGTGGCAAAGGGAACTCCCAAC
 
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rJMSF041B15-          CCTTTCCACGCAGAACTGCACTTGTGAACCTGAAATTAACTCGCTGCGAGGAAGCAACTT
JMSF041B15+           CCTTTCCACGCAGAACTGCACTTGTGAACCTGAAATTAACTCGCTGCGAGGAAGCAACTT
JMSF032G20+                                        CTGAAATTAACTCGCTGCGAGGAAGCAACTT
                      ____________________________________________________________
consensus             CCTTTCCACGCAGAACTGCACTTGTGAACCTGAAATTAACTCGCTGCGAGGAAGCAACTT
 
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rJMSF041B15-          CGATGTTGGACCGAACAAAAAAGACGCCGTCAGGAGGGAAAGTGATGACATTATTGAGAG
JMSF041B15+           CGATGTTGGACCGAACAAAAAAGACGCCGTCAGGAGGGAAAGTGATGACATTATTGAGAG
JMSF032G20+           CGATGTTGGACCGAACAAAAAAGACGCCGTCAGGAGGGAAAGTGATGACATTATTGAGAG
                      ____________________________________________________________
consensus             CGATGTTGGACCGAACAAAAAAGACGCCGTCAGGAGGGAAAGTGATGACATTATTGAGAG
 
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rJMSF041B15-          TCATGTTCTCGACATCGATGACCTGCAGAACATCACCCGCTCGAGTACCAAAAAGCGGCG
JMSF041B15+           TCATGTTCTCGACATCGATGACCTGCAGAACATCACCCGCTCGAGTACCAAAAAGCGGCG
JMSF032G20+           TCATGTTCTCGACATCGATGACCTGCAGAACATCACCCGCTCGAGTACCAAAAAGCGGCG
                      ____________________________________________________________
consensus             TCATGTTCTCGACATCGATGACCTGCAGAACATCACCCGCTCGAGTACCAAAAAGCGGCG
 
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rJMSF041B15-          CGTTCTTAATGATGAAGAGCTGCTCCTTCTCGGTAGTCCAAAGCAACCGCCACGTGGCGG
JMSF041B15+           CGTTCTTAATGATGAAGAGCTGCTCCTTCTCGGTAGTCCAAAGCAACCGCCACGTGGCGG
JMSF032G20+           CGTTCTTAATGATGAAGAGCTGCTCCTTCTCGGTAGTCCAAAGCAACCGCCACGTGGCGG
                      ____________________________________________________________
consensus             CGTTCTTAATGATGAAGAGCTGCTCCTTCTCGGTAGTCCAAAGCAACCGCCACGTGGCGG
 
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rJMSF041B15-          AGAGGGAGCTGCCGGTGGTAACGGTGTCTCGGCCGGCAGCGG                  
JMSF041B15+           AGAGGGAGCTGCCGGTGGTAACGGTGTCTCGGCCGGCAGCGGCGACGTCGTCAATCGCGG
JMSF032G20+           AGAGGGAGCTGCCGGTGGTAACGGTGTCTCGGCCGGCAGCGG-GACGTCGTCAATCGCGG
                      ____________________________________________________________
consensus             AGAGGGAGCTGCCGGTGGTAACGGTGTCTCGGCCGGCAGCGGCGACGTCGTCAATCGCGG
 
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JMSF041B15+           AGACTATCTGGGAGAGCTTTTGGGAGTCGGATTGAGTCCTCAGGCCACGGTCCTGGTCGG
JMSF032G20+           AGACTATCTGGGAGAGCTTTTGGGAGTCGGATTGAGTCCTCAGGCCACGGTCCTGGTCGG
                      ____________________________________________________________
consensus             AGACTATCTGGGAGAGCTTTTGGGAGTCGGATTGAGTCCTCAGGCCACGGTCCTGGTCGG
 
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JMSF041B15+           AGATGAGACGGAGGAGGTTGTCCTTGGCGGTTAGGGATCGATCCGTTAGGGAGAAGCGAG
JMSF032G20+           AGATGAGACGGAGGAGGTTGTCCTTGGCGGTTAGGGATCGATCCGTTAGGGAGAAGCGAG
                      ____________________________________________________________
consensus             AGATGAGACGGAGGAGGTTGTCCTTGGCGGTTAGGGATCGATCCGTTAGGGAGAAGCGAG
 
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JMSF041B15+           TCGCGGTGGGGGACCTGGCGGACTTCGAGTTGTAGGGAGCGAAGGAGGTTGGAGTGGCGG
JMSF032G20+           TCGCGGTGGGGGACCTGGCGGACTTCGAGTTGTAGGGAGCGAAGGAGGTTCGAGTGGCGG
                      ____________________________________________________________
consensus             TCGCGGTGGGGGACCTGGCGGACTTCGAGTTGTAGGGAGCGAAGGAGGTTGGAGTGGCGG
 
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JMSF041B15+           GAAGGGAGAGGCATGTAGCCATGCTTTTTCGGATCTGAGATAGTTGGGCTC         
JMSF032G20+           GAAGGGAGAGGCATGTAGCCATGCTTTTTCGGATCTGAGATAGTTGGGCTCTGGTCTCTC
                      ____________________________________________________________
consensus             GAAGGGAGAGGCATGTAGCCATGCTTTTTCGGATCTGAGATAGTTGGGCTCTGGTCTCTC