Contig 009422:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF031N16-                                         AGGCCTTTCAGAGATGCCATAGGTCCAAA
rJMSF021E14-                                        CAGGCCTTTCAGAGATGCCATAGGTCC-AA
                      ____________________________________________________________
consensus                                           CAGGCCTTTCAGAGATGCCATAGGTCCAAA
 
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rJMSF031N16-          AGTGACCCATGGCTTAAAGAAAACAATGGCAAATGCCTTACAATCATAAGGGCCAAAATT
rJMSF021E14-          AGTGACCCATGGCTTAAAGAAAACAATGGCAAATGCCTTACAATCATAAGGGCCAAAATT
                      ____________________________________________________________
consensus             AGTGACCCATGGCTTAAAGAAAACAATGGCAAATGCCTTACAATCATAAGGGCCAAAATT
 
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rJMSF031N16-          GGCCTAAGCAACAAAAGACCAAATAACCAAATAACCTAACTTGTATGCTTGATCATTGCC
rJMSF021E14-          GGCCTAAGCAACAAAAGACCAAATAACCAAATAACCTAACTTGTATGCTTGATCATTGCC
                      ____________________________________________________________
consensus             GGCCTAAGCAACAAAAGACCAAATAACCAAATAACCTAACTTGTATGCTTGATCATTGCC
 
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rJMSF031N16-          ATTCATGAACGAGTCCGCAAATCACCCAATTTGCAGAGAAAAATGACAATAAATGCATCA
rJMSF021E14-          ATTCATGAACGAGTCCGCAAATCACCCAATTTGCAGAGAAAAATGACAATAAATGCATCA
                      ____________________________________________________________
consensus             ATTCATGAACGAGTCCGCAAATCACCCAATTTGCAGAGAAAAATGACAATAAATGCATCA
 
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rJMSF031N16-          TCTCTAGTCTAGACATGAAATTGACATGAAACTTGTCAAAAAGCTTACTTGCTCAATTGC
rJMSF021E14-          TCTCTAGTCTAGACATGAAATTGACATGAAACTTGTCAAAAAGCTTACTTGCTCAATTGC
                      ____________________________________________________________
consensus             TCTCTAGTCTAGACATGAAATTGACATGAAACTTGTCAAAAAGCTTACTTGCTCAATTGC
 
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rJMSF031N16-          AGGTGGTTTATACAACTTGTGTTCCAAGGCCTTTGAATTCCAGTCTATACCCCACTTAGA
rJMSF021E14-          AGGTGGTTTATACAACTTGTGTTCCAAGGCCTTTGAATTCCAGTCTATACCCCACTTAGA
                      ____________________________________________________________
consensus             AGGTGGTTTATACAACTTGTGTTCCAAGGCCTTTGAATTCCAGTCTATACCCCACTTAGA
 
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rJMSF031N16-          TGCTATCTATATCTTGCATCAACTGATGCTTCTTATCTTTGGATGGTCTCCCAGACTTGA
rJMSF021E14-          TGCTATCTATATCTTGCATCAACTGATGCTTCTTATCTTTGGATGGTCTCCCAGACTTGA
                      ____________________________________________________________
consensus             TGCTATCTATATCTTGCATCAACTGATGCTTCTTATCTTTGGATGGTCTCCCAGACTTGA
 
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rJMSF031N16-          GCTTTTCAACAAACTCTTTGTTAACGAAACAATCGAGGGCATTGCCATATCTCTCAGCAA
rJMSF021E14-          GCTTTTCAACAAACTCTTTGTTAACGAAACAATCGAGGGCATTGCCATATCTCTCAGCAA
                      ____________________________________________________________
consensus             GCTTTTCAACAAACTCTTTGTTAACGAAACAATCGAGGGCATTGCCATATCTCTCAGCAA
 
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rJMSF031N16-          ATATGGTTCACTTCTCAGATAGCGCAATTCTTGCTGGCTGCTGCAAACATCAAAGTCGAC
rJMSF021E14-          ATATGGTTCACTTCTCAGATAGCGCAATTCTTGCTGGCTGCTGCAAACATCAAAGTCGAC
JMSF031N16+                  TCACTTCTCAGATAGCGCAATTCTTGCTGGCTGCTGCAAACATCAAAGTCGAC
                      ____________________________________________________________
consensus             ATATGGTTCACTTCTCAGATAGCGCAATTCTTGCTGGCTGCTGCAAACATCAAAGTCGAC
 
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rJMSF031N16-          ACGGCTTCCTTGCAATCCTCAGGCCATTGCTTGATCTCTTTATCCTGTGTTTGTTCTTCA
rJMSF021E14-          ACGGCTTCCTTGCAATCCTCAGGCCATTGCTTGATCTCTTTATCCTGTGTTTGTTCTTCA
JMSF021E14+                                                  TTATCCTGTGTTTGTTCTTCA
JMSF031N16+           ACGGCTTCCTTGCAATCCTCAGGCCATTGCTTGATCTCTTTATCCTGTGTTTGTTCTTCA
                      ____________________________________________________________
consensus             ACGGCTTCCTTGCAATCCTCAGGCCATTGCTTGATCTCTTTATCCTGTGTTTGTTCTTCA
 
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rJMSF031N16-          AGTGGTGCATCATTCAACAATTGCTCGTGTATTGATGAAGAAGATTGCTGATGAGATATT
rJMSF021E14-          AGTGGTGCATCATTCAACAATTGCTCGTGTATTGATGAAGAAGATTGCTGATGAGATATT
JMSF021E14+           AGTGGTGCATCATTCAACAATTGCTCGTGTATTGATGAAGAAGATTGCTGATGAGATATT
JMSF031N16+           AGTGGTGCATCATTCAACAATTGCTCGTGTATTGATGAAGAAGATTGCTGATGAGATATT
                      ____________________________________________________________
consensus             AGTGGTGCATCATTCAACAATTGCTCGTGTATTGATGAAGAAGATTGCTGATGAGATATT
 
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rJMSF031N16-          GGCCGACTCTTATCCATGAACCTTTTGGATATTGGCATACCTGCATAAACAGTTGGTCAC
rJMSF021E14-          GGCCGACTCTTATCCATGAACCTTTTGGATCTTGGCATACCTGCATAAACAGTTGGTCAC
JMSF021E14+           GGCCGACTCTTATCCATGAACCTTTTGGATCTTGGCATACCTGCATAAACAGTTGGTCAC
JMSF031N16+           GGCCGACTCTTATCCATGAACCTTTTGGATATTGGCATACCTGCATAAACAGTTGGTCAC
                      ____________________________________________________________
consensus             GGCCGACTCTTATCCATGAACCTTTTGGATCTTGGCATACCTGCATAAACAGTTGGTCAC
 
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rJMSF031N16-          TGAACTGGGCAGCCTGATACCTGCACTCGA                              
rJMSF021E14-          TGAACTGGGCAGCCTGATACCTGCACTCGA                              
JMSF021E14+           TGAACTGGGCAGCCTGATACCTGCACTCGAAGCGTTTTTTAATCCTTGCTAGAATAAGAT
JMSF031N16+           TGAACTGGGCAGCCTGATACCTGCACTCGAAGCGTTTTTTAATCCTTGCTAGAATAAGAT
                      ____________________________________________________________
consensus             TGAACTGGGCAGCCTGATACCTGCACTCGAAGCGTTTTTTAATCCTTGCTAGAATAAGAT
 
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JMSF021E14+           GCAAAGAGTATTAATGAGGAATCCTTATGCTTGTGGCTTTTACTTTTATGCTTTTCTCCT
JMSF031N16+           GCAAAGAGTATTAATGAGGAATCCTTATGCTTGTGGCTTTTACTTTTATGCTTTTCTCCT
                      ____________________________________________________________
consensus             GCAAAGAGTATTAATGAGGAATCCTTATGCTTGTGGCTTTTACTTTTATGCTTTTCTCCT
 
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JMSF021E14+           GACTTCTC                                                    
JMSF031N16+           GACTTCTCAGAAAACAGAAAATATCCTGCTCTGGGATCAAGCTTCTTTGCTAATTTTAGC
                      ____________________________________________________________
consensus             GACTTCTCAGAAAACAGAAAATATCCTGCTCTGGGATCAAGCTTCTTTGCTAATTTTAGC
 
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JMSF031N16+           ATTATTGAAGCTGGAATTGAAGCTGTGCACCTGCAGAATCTTGTTAGGTTTTTTAATGAC
                      ____________________________________________________________
consensus             ATTATTGAAGCTGGAATTGAAGCTGTGCACCTGCAGAATCTTGTTAGGTTTTTTAATGAC
 
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JMSF031N16+           CAAATGGACTCAGATCTTTAGGAGGAAGAATACATGTTTCTGTTTGTCTTTCTCTACCCA
                      ____________________________________________________________
consensus             CAAATGGACTCAGATCTTTAGGAGGAAGAATACATGTTTCTGTTTGTCTTTCTCTACCCA
 
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JMSF031N16+           CGAGTATCTATCTATCTCTCTCCATTGACAATGGGTTTCATGCATCATCAAGAGCGAAGG
                      ____________________________________________________________
consensus             CGAGTATCTATCTATCTCTCTCCATTGACAATGGGTTTCATGCATCATCAAGAGCGAAGG
 
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JMSF031N16+           AAGCAAGCAAGAAGTGAACCAAAGGTGCAGAAAGCTATTTTAACATTAAATCAAAATTAC
                      ____________________________________________________________
consensus             AAGCAAGCAAGAAGTGAACCAAAGGTGCAGAAAGCTATTTTAACATTAAATCAAAATTAC