Contig 009419:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS122F09Sequence568009419 (3)ref|XP_011086200.1|6e-18PREDICTED: calcium permeable stress-gated cation channel 1-like [Sesamum indicu
JMSF031J09Sequence621009419 (3)ref|XP_011086200.1|7e-23PREDICTED: calcium permeable stress-gated cation channel 1-like [Sesamum indicu694013599 (7)gb|ABK96436.1|1e-72unknown [Populus trichocarpa x Populus deltoides]
JMSF045E01Sequence739009419 (3)ref|XP_011086200.1|1e-49PREDICTED: calcium permeable stress-gated cation channel 1-like [Sesamum indicu707013599 (7)gb|ABK96436.1|2e-75unknown [Populus trichocarpa x Populus deltoides]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF045E01+ TGAGAGCAATGCCAAAGGAACAAA
                      ____________________________________________________________
consensus TGAGAGCAATGCCAAAGGAACAAA
 
. : . : . : . : . : . :
JMSF045E01+ AATTTTAAGCCCTAGCAAGTAAATCCTCAAATATACCGCAGAGTCAAGTCCAGCATGTTC
                      ____________________________________________________________
consensus AATTTTAAGCCCTAGCAAGTAAATCCTCAAATATACCGCAGAGTCAAGTCCAGCATGTTC
 
. : . : . : . : . : . :
JMFS122F09+ TA
JMSF045E01+ AATAAGCTCGGGTTCGGGCATTCTAAGTGCATCGGGCACCCAATTCAGAAACCTCACGTA
JMSF031J09+ CCAATTCAGAAACCTCACGTA
                      ____________________________________________________________
consensus AATAAGCTCGGGTTCGGGCATTCTAAGTGCATCGGGCACCCAATTCAGAAACCTCACGTA
 
. : . : . : . : . : . :
JMFS122F09+ AGCTCTCCAATCCAAATTGACAAACCTCTTTAACAACGCCCCAGAGTGCGTGGGGCTATC
JMSF045E01+ AGCTCTCCAATCCAAATTGACAAACCTCTTTAACAACGCCCCAGAGTGCGTGGGGCTATC
JMSF031J09+ AGCTCTCCAATCCAAATTGACAAACCTCTTTAACAACGCCCCAGAGTGCGTGGGGCTATC
                      ____________________________________________________________
consensus AGCTCTCCAATCCAAATTGACAAACCTCTTTAACAACGCCCCAGAGTGCGTGGGGCTATC
 
. : . : . : . : . : . :
JMFS122F09+ TCTCAACCCCTTGAGATACCATTTCGGGAAATAGACTCTATCGTTAACGGGCTGAAGGCG
JMSF045E01+ TCTCAACCCCTTGAGATACCATTTCGGGAAATAGACTCTATCGTTAACGGGCTGAAGGCG
JMSF031J09+ TCTCAACCCCTTGAGATACCATTTCGGGAAATAGACTCTATCGTTAACGGGCTGAAGGCG
                      ____________________________________________________________
consensus TCTCAACCCCTTGAGATACCATTTCGGGAAATAGACTCTATCGTTAACGGGCTGAAGGCG
 
. : . : . : . : . : . :
JMFS122F09+ TATAATTGCGAATGCAACAAGGAATATAAGCGCAGTAAGAATGTTAATAGCAGCTGCAAG
JMSF045E01+ TATAATTGCGAATGCAACAAGGAATATAAGCGCAGTAAGAATGTTAATAGCAGCTGCAAG
JMSF031J09+ TATAATTGCGAATGCAACAAGGAATATAAGCGCAGTAAGAATGTTAATAGCAGCTGCAAG
                      ____________________________________________________________
consensus TATAATTGCGAATGCAACAAGGAATATAAGCGCAGTAAGAATGTTAATAGCAGCTGCAAG
 
. : . : . : . : . : . :
JMFS122F09+ CCCTATATCTGCAAACGTCGCCATCTAGCAGCGGCATAAACAACAGAGCTTCTTTTCAGA
JMSF045E01+ CCCTATATCTGCAAACGTCGCCATCTAGCAGCGGCATAAACAACAGAGCTTCTTTTCAGA
JMSF031J09+ CCCTATATCTGCAAACGTCGCCATCTAGCAGCGGCATAAACAACAGAGCTTCTTTTCAGA
                      ____________________________________________________________
consensus CCCTATATCTGCAAACGTCGCCATCTAGCAGCGGCATAAACAACAGAGCTTCTTTTCAGA
 
. : . : . : . : . : . :
JMFS122F09+ CATTCGGTCTTATAAACAAGCCAAACCAGAACAACTTTCACGGCTATTCACTGCGAAGCA
JMSF045E01+ CATTCGGTCTTATAAACAAGCCAAACCAGAACAACTTTCACGGCTATTCACTGCGAAGCA
JMSF031J09+ CATTCGGTCTTATAAACAAGCCAAACCAGAACAACTTTCACGGCTATTCACTGCGAAGCA
                      ____________________________________________________________
consensus CATTCGGTCTTATAAACAAGCCAAACCAGAACAACTTTCACGGCTATTCACTGCGAAGCA
 
. : . : . : . : . : . :
JMFS122F09+ GTAAAGGAGGAAGCAAGGAGCGGAATAGAGCCGTAACGAGAGCCCTCCGATCGAAGAGAT
JMSF045E01+ GTAAAGGAGGAAGCAAGGAGCGGAATAGAGCCGTAACGAGAGCCCTCCGATCGAAGAGAT
JMSF031J09+ GTAAAGGAGGAAGCAAGGAGCGGAATAGAGCCGTAACGAGAGCCCTCCGATCGAAGAGAT
                      ____________________________________________________________
consensus GTAAAGGAGGAAGCAAGGAGCGGAATAGAGCCGTAACGAGAGCCCTCCGATCGAAGAGAT
 
. : . : . : . : . : . :
JMFS122F09+ GAACGAAATCTCAGTGAACCCTCCACTTTGAACTCGAAGCAACGCGAAATACAGCCAAAT
JMSF045E01+ GAACGAAATCTCAGTGAACCCTCCACTTTGAACTCGAAGCAACGCGAAATACAGCCAAAT
JMSF031J09+ GAACGAAATCTCAGTGAACCCTCCACTTTGAACTCGAAGCAACGCGAAATACAGCCAAAT
                      ____________________________________________________________
consensus GAACGAAATCTCAGTGAACCCTCCACTTTGAACTCGAAGCAACGCGAAATACAGCCAAAT
 
. : . : . : . : . : . :
JMFS122F09+ CTCTCTGTAAAAACTCAAGAAACGAATGGTCCCAACAATCTACTATGGCCTCGTTATCAG
JMSF045E01+ CTCTCTGTAAAAACTCAAGAAACGAATGGTCCCAACAATCTACTATGGCCTCGTTATCAG
JMSF031J09+ CTCTCTGTAAAAACTCAAGAAACGAATGGTCCCAACAATCTACTATGGCCTCGTTATCAG
                      ____________________________________________________________
consensus CTCTCTGTAAAAACTCAAGAAACGAATGGTCCCAACAATCTACTATGGCCTCGTTATCAG
 
. : . : . : . : . : . :
JMFS122F09+ CAAAGGAGAAAAAGGAGAAGAAAGAAGAGTGTTTGCTGAGCTTCGAAGAGACTAGAAGAA
JMSF045E01+ CAAAGGAGAAAAAGGAGAAGAAAGAAGAGTGTTTGCTGAGCTTCGAAGAGACTAGAAGAA
JMSF031J09+ CAAAGGAGAAAAAGGAGAAGAAAGAAGAGTGTTTGCTGAGCTTCGAAGAGACTAGAAGAA
                      ____________________________________________________________
consensus CAAAGGAGAAAAAGGAGAAGAAAGAAGAGTGTTTGCTGAGCTTCGAAGAGACTAGAAGAA
 
. : . : . : . : . : . :
JMFS122F09+ CATGGGGGCGGTGCCGTTCTAAGCGT
JMSF045E01+ CATGGGGGCGGTGCCGTTCTAAGCGTTTTTCCTGGGGAACTGAATCTTTATCAC
JMSF031J09+ CATGGGGGCGGTGCCGTTCTAAGCGTTTTTCCTGGGGAACTGAATCTTTATCACATATTC
                      ____________________________________________________________
consensus CATGGGGGCGGTGCCGTTCTAAGCGTTTTTCCTGGGGAACTGAATCTTTATCACATATTC