Contig 009419:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF045E01+                                               TGAGAGCAATGCCAAAGGAACAAA
                      ____________________________________________________________
consensus                                                 TGAGAGCAATGCCAAAGGAACAAA
 
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JMSF045E01+           AATTTTAAGCCCTAGCAAGTAAATCCTCAAATATACCGCAGAGTCAAGTCCAGCATGTTC
                      ____________________________________________________________
consensus             AATTTTAAGCCCTAGCAAGTAAATCCTCAAATATACCGCAGAGTCAAGTCCAGCATGTTC
 
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JMFS122F09+                                                                     TA
JMSF045E01+           AATAAGCTCGGGTTCGGGCATTCTAAGTGCATCGGGCACCCAATTCAGAAACCTCACGTA
JMSF031J09+                                                  CCAATTCAGAAACCTCACGTA
                      ____________________________________________________________
consensus             AATAAGCTCGGGTTCGGGCATTCTAAGTGCATCGGGCACCCAATTCAGAAACCTCACGTA
 
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JMFS122F09+           AGCTCTCCAATCCAAATTGACAAACCTCTTTAACAACGCCCCAGAGTGCGTGGGGCTATC
JMSF045E01+           AGCTCTCCAATCCAAATTGACAAACCTCTTTAACAACGCCCCAGAGTGCGTGGGGCTATC
JMSF031J09+           AGCTCTCCAATCCAAATTGACAAACCTCTTTAACAACGCCCCAGAGTGCGTGGGGCTATC
                      ____________________________________________________________
consensus             AGCTCTCCAATCCAAATTGACAAACCTCTTTAACAACGCCCCAGAGTGCGTGGGGCTATC
 
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JMFS122F09+           TCTCAACCCCTTGAGATACCATTTCGGGAAATAGACTCTATCGTTAACGGGCTGAAGGCG
JMSF045E01+           TCTCAACCCCTTGAGATACCATTTCGGGAAATAGACTCTATCGTTAACGGGCTGAAGGCG
JMSF031J09+           TCTCAACCCCTTGAGATACCATTTCGGGAAATAGACTCTATCGTTAACGGGCTGAAGGCG
                      ____________________________________________________________
consensus             TCTCAACCCCTTGAGATACCATTTCGGGAAATAGACTCTATCGTTAACGGGCTGAAGGCG
 
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JMFS122F09+           TATAATTGCGAATGCAACAAGGAATATAAGCGCAGTAAGAATGTTAATAGCAGCTGCAAG
JMSF045E01+           TATAATTGCGAATGCAACAAGGAATATAAGCGCAGTAAGAATGTTAATAGCAGCTGCAAG
JMSF031J09+           TATAATTGCGAATGCAACAAGGAATATAAGCGCAGTAAGAATGTTAATAGCAGCTGCAAG
                      ____________________________________________________________
consensus             TATAATTGCGAATGCAACAAGGAATATAAGCGCAGTAAGAATGTTAATAGCAGCTGCAAG
 
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JMFS122F09+           CCCTATATCTGCAAACGTCGCCATCTAGCAGCGGCATAAACAACAGAGCTTCTTTTCAGA
JMSF045E01+           CCCTATATCTGCAAACGTCGCCATCTAGCAGCGGCATAAACAACAGAGCTTCTTTTCAGA
JMSF031J09+           CCCTATATCTGCAAACGTCGCCATCTAGCAGCGGCATAAACAACAGAGCTTCTTTTCAGA
                      ____________________________________________________________
consensus             CCCTATATCTGCAAACGTCGCCATCTAGCAGCGGCATAAACAACAGAGCTTCTTTTCAGA
 
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JMFS122F09+           CATTCGGTCTTATAAACAAGCCAAACCAGAACAACTTTCACGGCTATTCACTGCGAAGCA
JMSF045E01+           CATTCGGTCTTATAAACAAGCCAAACCAGAACAACTTTCACGGCTATTCACTGCGAAGCA
JMSF031J09+           CATTCGGTCTTATAAACAAGCCAAACCAGAACAACTTTCACGGCTATTCACTGCGAAGCA
                      ____________________________________________________________
consensus             CATTCGGTCTTATAAACAAGCCAAACCAGAACAACTTTCACGGCTATTCACTGCGAAGCA
 
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JMFS122F09+           GTAAAGGAGGAAGCAAGGAGCGGAATAGAGCCGTAACGAGAGCCCTCCGATCGAAGAGAT
JMSF045E01+           GTAAAGGAGGAAGCAAGGAGCGGAATAGAGCCGTAACGAGAGCCCTCCGATCGAAGAGAT
JMSF031J09+           GTAAAGGAGGAAGCAAGGAGCGGAATAGAGCCGTAACGAGAGCCCTCCGATCGAAGAGAT
                      ____________________________________________________________
consensus             GTAAAGGAGGAAGCAAGGAGCGGAATAGAGCCGTAACGAGAGCCCTCCGATCGAAGAGAT
 
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JMFS122F09+           GAACGAAATCTCAGTGAACCCTCCACTTTGAACTCGAAGCAACGCGAAATACAGCCAAAT
JMSF045E01+           GAACGAAATCTCAGTGAACCCTCCACTTTGAACTCGAAGCAACGCGAAATACAGCCAAAT
JMSF031J09+           GAACGAAATCTCAGTGAACCCTCCACTTTGAACTCGAAGCAACGCGAAATACAGCCAAAT
                      ____________________________________________________________
consensus             GAACGAAATCTCAGTGAACCCTCCACTTTGAACTCGAAGCAACGCGAAATACAGCCAAAT
 
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JMFS122F09+           CTCTCTGTAAAAACTCAAGAAACGAATGGTCCCAACAATCTACTATGGCCTCGTTATCAG
JMSF045E01+           CTCTCTGTAAAAACTCAAGAAACGAATGGTCCCAACAATCTACTATGGCCTCGTTATCAG
JMSF031J09+           CTCTCTGTAAAAACTCAAGAAACGAATGGTCCCAACAATCTACTATGGCCTCGTTATCAG
                      ____________________________________________________________
consensus             CTCTCTGTAAAAACTCAAGAAACGAATGGTCCCAACAATCTACTATGGCCTCGTTATCAG
 
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JMFS122F09+           CAAAGGAGAAAAAGGAGAAGAAAGAAGAGTGTTTGCTGAGCTTCGAAGAGACTAGAAGAA
JMSF045E01+           CAAAGGAGAAAAAGGAGAAGAAAGAAGAGTGTTTGCTGAGCTTCGAAGAGACTAGAAGAA
JMSF031J09+           CAAAGGAGAAAAAGGAGAAGAAAGAAGAGTGTTTGCTGAGCTTCGAAGAGACTAGAAGAA
                      ____________________________________________________________
consensus             CAAAGGAGAAAAAGGAGAAGAAAGAAGAGTGTTTGCTGAGCTTCGAAGAGACTAGAAGAA
 
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JMFS122F09+           CATGGGGGCGGTGCCGTTCTAAGCGT                                  
JMSF045E01+           CATGGGGGCGGTGCCGTTCTAAGCGTTTTTCCTGGGGAACTGAATCTTTATCAC      
JMSF031J09+           CATGGGGGCGGTGCCGTTCTAAGCGTTTTTCCTGGGGAACTGAATCTTTATCACATATTC
                      ____________________________________________________________
consensus             CATGGGGGCGGTGCCGTTCTAAGCGTTTTTCCTGGGGAACTGAATCTTTATCACATATTC