Contig 009413:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS074G02Sequence634009413 (6)ref|XP_004247372.1|7e-22PREDICTED: cyclin-T1-3 [Solanum lycopersicum]
JMSF019J17Sequence511009413 (6)ref|XP_006359905.1|1e-14PREDICTED: cyclin-T1-4-like isoform X2 [Solanum tuberosum]786005677 (4)
JMSF021O04Sequence677009413 (6)ref|XP_004247372.1|1e-21PREDICTED: cyclin-T1-3 [Solanum lycopersicum]798005677 (4)
JMSF025I13Sequence374009413 (6)782005677 (4)
JMSF031C22Sequence633009413 (6)ref|XP_009793877.1|4e-26PREDICTED: cyclin-T1-3-like isoform X2 [Nicotiana sylvestris]460005677 (4)
JMSF031L18Sequence625009413 (6)ref|XP_009793877.1|4e-25PREDICTED: cyclin-T1-3-like isoform X2 [Nicotiana sylvestris]742024613ref|XP_009793875.1|4e-17PREDICTED: cyclin-T1-3-like isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS074G02+                                                             AAAAAGACCT
JMSF021O04+                                                            GAAAAAGACCT
                      ____________________________________________________________
consensus                                                              GAAAAAGACCT
 
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JMFS074G02+           ATTACTGGTACTAGTAGTGGAAATTGCAATACTGGAATTATTGTTGCATATTGAGGTGAC
JMSF021O04+           ATTACTGGTACTAGTAGTGGAAATTGCAATACTGGAATTATTGTTGCATATTGAGGTGAC
JMSF031L18+                                            GGAATTATTGTTGCATATTGAGGTGAC
JMSF031C22+                                            GGAATTATTGTTGCATATTGAGGTGAC
                      ____________________________________________________________
consensus             ATTACTGGTACTAGTAGTGGAAATTGCAATACTGGAATTATTGTTGCATATTGAGGTGAC
 
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JMFS074G02+           ACTATCATATGCACTCTGATTCCTTGGATGCATGTTGTTATGTGTGCTTGGTTGTCTTGG
JMSF021O04+           ACTATCATATGCACTCTGATTCCTTGGATGCATGTTGTTATGTGTGCTTGGTTGTCTTGG
JMSF031L18+           ACTATCATATGCACTCTGATTCCTTGGATGCATGTTGTTATGTGTGCTTGGTTGTCTTGG
JMSF031C22+           ACTATCATATGCACTCTGATTCCTTGGATGCATGTTGTTATGTGTGCTTGGTTGTCTTGG
                      ____________________________________________________________
consensus             ACTATCATATGCACTCTGATTCCTTGGATGCATGTTGTTATGTGTGCTTGGTTGTCTTGG
 
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JMFS074G02+           TGGAACGTTATTACATGCATGGAGTTGCTGATGGTAACTCGCACTACTTCCCCATGAAGA
JMSF021O04+           TGGAACGTTATTACATGCATGGAGTTGCTGATGGTAACTCGCACTACTTCCCCATGAAGA
JMSF031L18+           TGGAACGTTATTACATGCATGGAGTTGCTGATGGTAACTCGCACTACTTCCCCATGAAGA
JMSF019J17+                                      CTGATGGTAACTCGCACTACTACCCCATGAAGA
JMSF031C22+           TGGAACGTTATTACATGCATGGAGTTGCTGATGGTAACTCGCACTACTTCCCCATGAAGA
                      ____________________________________________________________
consensus             TGGAACGTTATTACATGCATGGAGTTGCTGATGGTAACTCGCACTACTTCCCCATGAAGA
 
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JMFS074G02+           AGATAAGCACTTCCTTCTCTTTGCAGAAGGTTCAACCTCAGGTTTCACACAATTACTATT
JMSF021O04+           AGATAAGCACTTCCTTCTCTTTGCAGAAGGTTCAACCTCAGGTTTCACACAATTACTATT
JMSF031L18+           AGATAAGCACTTCCTTCTCTTTGCAGAAGGTTCAACCTCAGGTTTCACACAATTACTATT
JMSF019J17+           AGATAAGCACTTCCTTCTCTTTGCAGAAGGTTCAACCTCAGGTTTCACACAATTACTATT
JMSF031C22+           AGATAAGCACTTCCTTCTCTTTGCAGAAGGTTCAACCTCAGGTTTCACACAATTACTATT
                      ____________________________________________________________
consensus             AGATAAGCACTTCCTTCTCTTTGCAGAAGGTTCAACCTCAGGTTTCACACAATTACTATT
 
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JMFS074G02+           GTAATTGTAGCCATACTCCATAAAGTTTTTACGGATATCATTTGGATGATCAATATCTCC
JMSF021O04+           GTAATTGTAGCCATACTCCATAAAGTTTTTACGGATATCATTTGGATGATCAATATCTCC
JMSF031L18+           GTAATTGTAGCCATACTCCATAAAGTTTTTACGGATATCATTTGGATGATCAATATCTCC
JMSF019J17+           GTAATNGTAGCCATACTCCATAAAGTTTTTACGGATATCATTTGGATGATCAATATCTCC
JMSF025I13+                                                          GATCAATATCTCC
JMSF031C22+           GTAATTGTAGCCATACTCCATAAAGTTTTTACGGATATCATTTGGATGATCAATATCTCC
                      ____________________________________________________________
consensus             GTAATTGTAGCCATACTCCATAAAGTTTTTACGGATATCATTTGGATGATCAATATCTCC
 
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JMFS074G02+           TTGATGTGTAAAGCTATAGTCAAAATACTTGGTGTTGTTGTAGGTATTGGGAGCAAGTGT
JMSF021O04+           TTGATGTGTAAAGCTATAGTCAAAATACTTGGTGTTGTTGTAGGTATTGGGAGCAAGTGT
JMSF031L18+           TTGATGTGTAAAGCTATAGTCAAAATACTTGGTGTTGTTGTAGGTATTGGGAGCAAGTGT
JMSF019J17+           TTGATGTGTAAAGCTATAGTCAAAATACTTGGTGTTGTTGTAGGTATTGGGAGCAAGTGT
JMSF025I13+           TTGATGGGTAAAGCTATAGTCAAAATACTTGGNGTTGTTGTAGGTATTGGGAGCAAGTGT
JMSF031C22+           TTGATGTGTAAAGCTATAGTCAAAATACTTGGTGTTGTTGTAGGTATTGGGAGCAAGTGT
                      ____________________________________________________________
consensus             TTGATGTGTAAAGCTATAGTCAAAATACTTGGTGTTGTTGTAGGTATTGGGAGCAAGTGT
 
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JMFS074G02+           GGCATTGTGGTTATTAGCATGGTTTCTACCATGTGAGAATCTGTACTGACCACGCAAAGG
JMSF021O04+           GGCATTGTGGTTATTAGCATGGTTTCTACCATGTGAGAATCTGTACTGACCACGCAAAGG
JMSF031L18+           GGCATTGTGGTTATTAGCATGGTTTCTACCATGTGAGAATCTGTACTGACCACGCAAAGG
JMSF019J17+           GGCATTGTGGTTATTAGCATGGTTTCTACCATGTGAGAATCTGTACTGACCACGCAAAGG
JMSF025I13+           GGCANTGTGGTTATTAGCATGGTTTTTACCNTGTGAGAATCTGTNCTGACCACGCAAAGG
JMSF031C22+           GGCATTGTGGTTATTAGCATGGTTTCTACCATGTGAGAATCTGTACTGACCACGCAAAGG
                      ____________________________________________________________
consensus             GGCATTGTGGTTATTAGCATGGTTTCTACCATGTGAGAATCTGTACTGACCACGCAAAGG
 
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JMFS074G02+           ACCACCTTTTGTATGGTATGTCTGAGAATAAGCCATTATACCGGATTAGCAGAAGAGCTA
JMSF021O04+           ACCACCTTTTGTATGGTATGTCTGAGAATAAGCCATTATACCGGATTAGCAGAAGAGCTA
JMSF031L18+           ACCACCTTTTGTATGGTATGTCTGAGAATAAGCCATTATACCGGATTAGCAGAAGAGCTA
JMSF019J17+           ACCACCTTTTGTATGGTATGTCTGAGAATAAGCCATTATACCGGATTAGCAGAAGAGCTA
JMSF025I13+           ACCACCTTTTGTATGGTATGTCTGAGAATAAGCCNTTATACCGGATTAGCAGAAGAGCTA
JMSF031C22+           ACCACCTTTTGTATGGTATGTCTGAGAATAAGCCATTATACCGGATTAGCAGAAGAGCTA
                      ____________________________________________________________
consensus             ACCACCTTTTGTATGGTATGTCTGAGAATAAGCCATTATACCGGATTAGCAGAAGAGCTA
 
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JMFS074G02+           GATCAAGCCGTATCCGGGAATCTAAAAACAACAGTTCTGCAAAAAGCGGTTGC-TTTTTT
JMSF021O04+           GATCAAGCCGTATCCGGGAATCTAAAAACAACAGTTCTGCAAAAAGCGGTTGC-TTTTTT
JMSF031L18+           GATCAAGCCGTATCCGGGAATCTAAAAACAACAGTTCTGCAAAAAGCGGTTGC-TTTTTT
JMSF019J17+           GATCAAGCCGTATCCGGGAATCTAAAAACAACAGTTCTGCAAAAAGCGGTTGC-TTTTTT
JMSF025I13+           GATCAAGCCGTATCCGGGAATNTAAAAACAACAGTTNTGCAAAAAGCGGTTGCTTTTTTT
JMSF031C22+           GATCAAGCCGTATCCGGGAATCTAAAAACAACAGTTNTGCAAAAAGCGGTTGC-TTTTTT
                      ____________________________________________________________
consensus             GATCAAGCCGTATCCGGGAATCTAAAAACAACAGTTCTGCAAAAAGCGGTTGC-TTTTTT
 
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JMFS074G02+           TTTCTTCTAATTATTCTGAGGAGAGGTTGGGCGATCGGCGGAGATTAATAGGGTTTTGAC
JMSF021O04+           TTTCTTCTAATTATTCTGAGGAGAGGTTGGGCGATCGGCGGAGATTAATAGGGTTTTGAC
JMSF031L18+           TTTCTTCTAATTATTCTGAGGAGAGGTTGGGCGATCGGCGGAGATTAATAGGGTTTTGAC
JMSF019J17+           TTTCTTCTAATTATTCTGAGGAGAGGTTGGGCGATCGGCGGAGATTAATAGGGTTTTGAC
JMSF025I13+           TTTCTTCTAATTATTCTGAGGAGAGGTTGGGCGATCGGCGGAGATTAATAGGGTTTTGAC
JMSF031C22+           TTTCTTCTAATTATTCTGAGGAGAGGTTGGGCGATCGGCGGAGATTAATAGGGTTTTGAC
                      ____________________________________________________________
consensus             TTTCTTCTAATTATTCTGAGGAGAGGTTGGGCGATCGGCGGAGATTAATAGGGTTTTGAC
 
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JMFS074G02+           GTATGAAACCGACGAAAGAGAATTG                                   
JMSF021O04+           GTATGAAACCGACGAAAGAGAATTGTGAAAGAAGAGAGATTTACATAGAAAAATCCAT  
JMSF031L18+           GTATGAAACCGACGAAAGAGAATTGTGAAAGAAGAGAGATTTACATAGAAAAATCCATC 
JMSF019J17+           GTATGAAACCGACGAAAGAGAATTGTGAAAGAAGAGAGATTTACATAGAAAAATCCATC 
JMSF025I13+           GTATGAAACCGACGAAAGAGAATTGTGAAAGAAGAGAGATTTACATAGAAAAATCCATC 
JMSF031C22+           GTATGAAACCGACGAAAGAGAATTGTGAAAGAAGAGAGATTTACATAGAAAAATCCATCA
                      ____________________________________________________________
consensus             GTATGAAACCGACGAAAGAGAATTGTGAAAGAAGAGAGATTTACATAGAAAAATCCATCA