Contig 009411:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031A10Sequence676009411 (2)715001465 (3)ref|XP_009758869.1|8e-31PREDICTED: cyclic dof factor 1-like [Nicotiana sylvestris]
JMSF043M24Sequence757009411 (2)623001465 (3)ref|XP_006438711.1|3e-20hypothetical protein CICLE_v10031433mg [Citrus clementina] gb|ESR51951.1| hypoth

Alignment

This contig is upended


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JMSF043M24+                                                                      T
                      ____________________________________________________________
consensus                                                                        T
 
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JMSF043M24+           TCCTTATGGTCCTTTACCGACTAGGGTCACAAAACAGGATTTACGCGCTTTGGGTAGTGG
                      ____________________________________________________________
consensus             TCCTTATGGTCCTTTACCGACTAGGGTCACAAAACAGGATTTACGCGCTTTGGGTAGTGG
 
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JMSF043M24+           CGGCAGGTTTCTCTTGTCACCCCAATAAAAGAGACAAGACATTAAGGCTAAGATTTTGCA
                      ____________________________________________________________
consensus             CGGCAGGTTTCTCTTGTCACCCCAATAAAAGAGACAAGACATTAAGGCTAAGATTTTGCA
 
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JMSF043M24+           TACCAAACATGGGGGCATGTATAATCAATTCAATTCAATCAAAGTTGCAAACTTTGGACT
                      ____________________________________________________________
consensus             TACCAAACATGGGGGCATGTATAATCAATTCAATTCAATCAAAGTTGCAAACTTTGGACT
 
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JMSF043M24+           CAATTCCAGAAATTTCTTGGATTCAATTCAAGAAACAACCATAGGGTTGTAGCTGTGATT
                      ____________________________________________________________
consensus             CAATTCCAGAAATTTCTTGGATTCAATTCAAGAAACAACCATAGGGTTGTAGCTGTGATT
 
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JMSF043M24+           CTTCATTTCATTTCTAGGAGATCCAAAATGGTTCAGAACAATTCAATCAAAGTTGCAAAC
JMSF031A10+                                                       AATCAAAGGTGCAAAC
                      ____________________________________________________________
consensus             CTTCATTTCATTTCTAGGAGATCCAAAATGGTTCAGAACAATTCAATCAAAGTTGCAAAC
 
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JMSF043M24+           TTTGGACTCAATTTCCAGAAATATGATCAACCCATTACTCACTATACTACTCTGGATAAT
JMSF031A10+           TTNGGACTCAATTTCCAGAAATATGATCAACCCATTACTCACTATACTACTCTGGATAAT
                      ____________________________________________________________
consensus             TTTGGACTCAATTTCCAGAAATATGATCAACCCATTACTCACTATACTACTCTGGATAAT
 
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JMSF043M24+           GGGTTTCCCTTAAACACCACAAAAAGCCTTCATTCAAGCCAATATATTTTCTTTTGAATG
JMSF031A10+           GGGTTTCCCTTAAACACCACAAAAAGCCTTCATTCAAGCCAATATATTTTCTTTTGAATG
                      ____________________________________________________________
consensus             GGGTTTCCCTTAAACACCACAAAAAGCCTTCATTCAAGCCAATATATTTTCTTTTGAATG
 
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JMSF043M24+           CAGAAGAAATAGAAACAGAGCTTTATATATCATATCATATATATATACTAAAAACAACCC
JMSF031A10+           CAGAAGAAATAGAAACAGAGCTTTATATATCATATCATATATATATACTAAAAACAACCC
                      ____________________________________________________________
consensus             CAGAAGAAATAGAAACAGAGCTTTATATATCATATCATATATATATACTAAAAACAACCC
 
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JMSF043M24+           AATATTTTCATATTCCATTACGTAAAACTAGCAAAACAGAAGTAGTGCCAAATATAAGCA
JMSF031A10+           AATATTTTCATATTCCATTACGTAAAACTAGCAAAACAGAAGTAGTGCCAAATATAAGCA
                      ____________________________________________________________
consensus             AATATTTTCATATTCCATTACGTAAAACTAGCAAAACAGAAGTAGTGCCAAATATAAGCA
 
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JMSF043M24+           TGGTTTTTCAAGAATTCTACCATGTTGTCTTGGGAAGGTGTCGAGACAGAAATGGAAACG
JMSF031A10+           TGGTTTTTCAAGAATTCTACCATGTTGTCTTGGGAAGGTGTCGAGACAGAAATGGAAACG
                      ____________________________________________________________
consensus             TGGTTTTTCAAGAATTCTACCATGTTGTCTTGGGAAGGTGTCGAGACAGAAATGGAAACG
 
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JMSF043M24+           TCGGCGTCGCCGTCTTGCGGCGGCGGCGGCGGCGGTGGCAGAGAGATCGTCATCCCGAAG
JMSF031A10+           TCGGCGTCGCCGTCTTGCGGCGGCGGCGGCGGCGGTGGCAGAGAGATCGTCATCCCGAAG
                      ____________________________________________________________
consensus             TCGGCGTCGCCGTCTTGCGGCGGCGGCGGCGGCGGTGGCAGAGAGATCGTCATCCCGAAG
 
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JMSF043M24+           AGCTTGATCGCCGGGTCTTTCACTTCCGACATTCTGGTTTGCTTTTGATTCTCTCCCATG
JMSF031A10+           AGCTTGATCGCCGGGTCTTTCACTTCCGACATTCTGGTTTGCTTTTGATTCTCTCCCATG
                      ____________________________________________________________
consensus             AGCTTGATCGCCGGGTCTTTCACTTCCGACATTCTGGTTTGCTTTTGATTCTCTCCCATG
 
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JMSF043M24+           TTTTCGACTTTTCGTTTTCTCCCTTTTCCAACGC                          
JMSF031A10+           TTTTCGACTTTTCGTTTTCTCCCTTTTCCAACGCACGAAACACAACAACACCCAAAAGTC
                      ____________________________________________________________
consensus             TTTTCGACTTTTCGTTTTCTCCCTTTTCCAACGCACGAAACACAACAACACCCAAAAGTC
 
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JMSF031A10+           TCTCTTTGTAGCAGCTTTTTTTTTCTCGGTTTCTACGCTCTCTCTCTCTTTCTCTTTCTC
                      ____________________________________________________________
consensus             TCTCTTTGTAGCAGCTTTTTTTTTCTCGGTTTCTACGCTCTCTCTCTCTTTCTCTTTCTC
 
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JMSF031A10+           TCTCTCCACTTTTTTCAAACGGAGTTTCAGTTCAACTCTGCGGCGGCATATATGATTCGT
                      ____________________________________________________________
consensus             TCTCTCCACTTTTTTCAAACGGAGTTTCAGTTCAACTCTGCGGCGGCATATATGATTCGT
 
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JMSF031A10+           CGTCGTTTTGAGTTCGGCTCATTTTTCTTTTGTTGATTTTTGCGATCAAGTACGAAGATC
                      ____________________________________________________________
consensus             CGTCGTTTTGAGTTCGGCTCATTTTTCTTTTGTTGATTTTTGCGATCAAGTACGAAGATC