Contig 009410:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030O14Sequence660009410 (2)emb|CDP16541.1|7e-63unnamed protein product [Coffea canephora]684009410 (2)ref|XP_007219233.1|4e-21hypothetical protein PRUPE_ppa017818mg, partial [Prunus persica] gb|EMJ20432.1|

Alignment

This contig is upended


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rJMSF030O14-                                                TATATTCTTCTGCATACAACTA
                      ____________________________________________________________
consensus                                                   TATATTCTTCTGCATACAACTA
 
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rJMSF030O14-          AGAAAAGGATTCATAAAAAGGTAGATAGTATAGATTTCTACAGTAAATACAATTCAACTC
                      ____________________________________________________________
consensus             AGAAAAGGATTCATAAAAAGGTAGATAGTATAGATTTCTACAGTAAATACAATTCAACTC
 
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rJMSF030O14-          CATAAACAGTTCGAAGACAAACTATACAACTCATACACACATGAGTTCCACTACTAATCA
                      ____________________________________________________________
consensus             CATAAACAGTTCGAAGACAAACTATACAACTCATACACACATGAGTTCCACTACTAATCA
 
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rJMSF030O14-          ATGATTTCTCCTTCCTCTTGATTTTCTTCCACTTCGGTGTGACCAACGTTCTGATAAAGT
                      ____________________________________________________________
consensus             ATGATTTCTCCTTCCTCTTGATTTTCTTCCACTTCGGTGTGACCAACGTTCTGATAAAGT
 
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rJMSF030O14-          AAATCAGCCAGTTCTTTGAATTTATTGTCCTCATCATTGTCGTCATTGAACGGTTCTTCA
                      ____________________________________________________________
consensus             AAATCAGCCAGTTCTTTGAATTTATTGTCCTCATCATTGTCGTCATTGAACGGTTCTTCA
 
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rJMSF030O14-          ATAGGGAATGCTTGTTCAATGGCCACATTCTGATTCCCTGATTCTTGACCAATCACAGAT
                      ____________________________________________________________
consensus             ATAGGGAATGCTTGTTCAATGGCCACATTCTGATTCCCTGATTCTTGACCAATCACAGAT
 
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rJMSF030O14-          GGAGATTTCAGAGGTGGGGATGCTTGTTCAATGGCCACATTCTGATTCTCTGATTCTTTA
                      ____________________________________________________________
consensus             GGAGATTTCAGAGGTGGGGATGCTTGTTCAATGGCCACATTCTGATTCTCTGATTCTTTA
 
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rJMSF030O14-          ACAGTCACAGATGGGGATTTCAGAGGTGGGGATGCTTGTTCAATGGCCACATTCTGATTC
                      ____________________________________________________________
consensus             ACAGTCACAGATGGGGATTTCAGAGGTGGGGATGCTTGTTCAATGGCCACATTCTGATTC
 
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rJMSF030O14-          TCTGATTCTTTAACAATCACCGATGGAAATTTCAGAGGCTTCTCAGGGCATTCTGTGAAG
JMSF030O14+           TCTGATTCTTTAACAATCACCGATGGAAATTTCAGAGGCTTCTCAGGGCATTCTGTGAAG
                      ____________________________________________________________
consensus             TCTGATTCTTTAACAATCACCGATGGAAATTTCAGAGGCTTCTCAGGGCATTCTGTGAAG
 
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rJMSF030O14-          AAAGAATTCATAACCATGAACCTAAAAGCTTGCAATAGATGCTGCTTATCTCTTCTAATG
JMSF030O14+           AAAGAATTCATAACCATGAACCTAAAAGCTTGCAATAGATGCTGCTTATCTCTTCTAATG
                      ____________________________________________________________
consensus             AAAGAATTCATAACCATGAACCTAAAAGCTTGCAATAGATGCTGCTTATCTCTTCTAATG
 
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rJMSF030O14-          TCTGCACCCAGCAGCTTTTGCAAAAGAGTTGGTTTCCTTTTGCTCTGTGAAGCTGAGCCA
JMSF030O14+           TCTGCACCCAGCAGCTTTTGCAAAAGAGTTGGTTTCCTTTTGCTCTGTGAAGCTGAGCCA
                      ____________________________________________________________
consensus             TCTGCACCCAGCAGCTTTTGCAAAAGAGTTGGTTTCCTTTTGCTCTGTGAAGCTGAGCCA
 
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rJMSF030O14-          CTTTTTTCCAACTTCCGTTCCCTCGACTGGTTGTCATTCTGCTCTTGAATGTTGGATGAA
JMSF030O14+           CTTTTTTCCAACTTCCGTTCCCTCGACTGGTTGTCATTCTGCTCTTGAATGTTGGATGAA
                      ____________________________________________________________
consensus             CTTTTTTCCAACTTCCGTTCCCTCGACTGGTTGTCATTCTGCTCTTGAATGTTGGATGAA
 
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rJMSF030O14-          TT                                                          
JMSF030O14+           TTGGGGTCCTCAAATTTTTGCTTTTTGGAGAACTGGTTCCTTTGACCAAATCGTCCCCTT
                      ____________________________________________________________
consensus             TTGGGGTCCTCAAATTTTTGCTTTTTGGAGAACTGGTTCCTTTGACCAAATCGTCCCCTT
 
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JMSF030O14+           TTGTTTGATTTGTATTGGAACTTTTCATTCTTACGGAATGGCCTTCTGTTCTCCCTTTCA
                      ____________________________________________________________
consensus             TTGTTTGATTTGTATTGGAACTTTTCATTCTTACGGAATGGCCTTCTGTTCTCCCTTTCA
 
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JMSF030O14+           TGGCCTGGTCTCTCCAAGTCTGACAGATAGGAAGATGGTATTTCTGCAATTTCACAACCT
                      ____________________________________________________________
consensus             TGGCCTGGTCTCTCCAAGTCTGACAGATAGGAAGATGGTATTTCTGCAATTTCACAACCT
 
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JMSF030O14+           AGCTCTGCTTGCTTCGCCAAAATTTCCTTCAGTTGCTGGCGGCGTAATCTTGCAGCATTT
                      ____________________________________________________________
consensus             AGCTCTGCTTGCTTCGCCAAAATTTCCTTCAGTTGCTGGCGGCGTAATCTTGCAGCATTT
 
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JMSF030O14+           GCATTGTCTTCAGTCCCAGCCAACTTTTGCGAATTCTTCTCAATGTTGGCTTTTGAAGGA
                      ____________________________________________________________
consensus             GCATTGTCTTCAGTCCCAGCCAACTTTTGCGAATTCTTCTCAATGTTGGCTTTTGAAGGA
 
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JMSF030O14+           TAATTTTTCCTTCGGTCTTCCCTCCATTGTTGTATTTCTTTCTCAGTGTATAACAAAGGG
                      ____________________________________________________________
consensus             TAATTTTTCCTTCGGTCTTCCCTCCATTGTTGTATTTCTTTCTCAGTGTATAACAAAGGG
 
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JMSF030O14+           AGTGGCCTTTGCATACTCTTTTTCTCATTTTGATTTTGGTTCTTGGAGGAATTTTCAGGC
                      ____________________________________________________________
consensus             AGTGGCCTTTGCATACTCTTTTTCTCATTTTGATTTTGGTTCTTGGAGGAATTTTCAGGC