Contig 009400:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009A20Sequence282009400 (2)ref|XP_006350216.1|8e-10PREDICTED: translation factor GUF1 homolog, chloroplastic-like [Solanum tuberos816013896 (2)dbj|BAJ33885.1|1e-115unnamed protein product [Thellungiella halophila]
JMSF029P03Sequence607009400 (2)ref|XP_009605439.1|3e-81PREDICTED: translation factor GUF1 homolog, chloroplastic {ECO:0000255|HAMAP-Rul709013896 (2)ref|XP_008393921.1|2e-91PREDICTED: translation factor GUF1 homolog, chloroplastic [Malus domestica]

Alignment

This contig is upended


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JMSF029P03+                                                                GAGCTTC
                      ____________________________________________________________
consensus                                                                  GAGCTTC
 
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JMSF029P03+           CACACCCTGAGAAGCATCTACAACAAGGAGTGCACCTTCACAGGCTGCAAGGGAGCGAGA
                      ____________________________________________________________
consensus             CACACCCTGAGAAGCATCTACAACAAGGAGTGCACCTTCACAGGCTGCAAGGGAGCGAGA
 
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JMSF029P03+           AACNTCATATGAGAAATCTACATGACCTGGAGTGTCAATAAGATTCAGGCAATATGGCTC
                      ____________________________________________________________
consensus             AACNTCATATGAGAAATCTACATGACCTGGAGTGTCAATAAGATTCAGGCAATATGGCTC
 
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JMSF029P03+           CCCATNATACATGTAACGCATCCGAGAAGCCTGTAATTTGATAGTGATGCCTCTTTCTCG
                      ____________________________________________________________
consensus             CCCATNATACATGTAACGCATCCGAGAAGCCTGTAATTTGATAGTGATGCCTCTTTCTCG
 
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JMSF029P03+           CTCCAAATCCATGTTATCAAGGAACTGTTCCTTCATATCTCGNCTCTCCACTGTCCCTGT
                      ____________________________________________________________
consensus             CTCCAAATCCATGTTATCAAGGAACTGTTCCTTCATATCTCGNCTCTCCACTGTCCCTGT
 
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JMSF029P03+           CAGNTGCAGCAACTTATCCGCTAGCGTCGATTTCCCATGATCAATATGCGCTATTATGCA
                      ____________________________________________________________
consensus             CAGNTGCAGCAACTTATCCGCTAGCGTCGATTTCCCATGATCAATATGCGCTATTATGCA
 
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JMSF009A20+                            ATATAGGAACCTTCGAGAGACGGTCTTTGCCGGCGCGGGCGGC
JMSF029P03+           GAAATTCCTNATATNTGATATAGGAACCTTCGAGAGACGGTCTTANCCGGCGCGGGCGGC
                      ____________________________________________________________
consensus             GAAATTCCTNATATNTGATATAGGAACCTTCGAGAGACGGTCTTTGCCGGCGCGGGCGGC
 
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JMSF009A20+           GAGTTCGAGGTCAGTGGCTGTGGCCTGGCAGTGGACGCGGAAGTTACGGCGGCGCGTTGA
JMSF029P03+           GAGTTCGAGGTCAGTGNCTGTGGCCTGGCAGTGGACGCGGAAGTTACGNCGGCGCGTTGA
                      ____________________________________________________________
consensus             GAGTTCGAGGTCAGTGGCTGTGGCCTGGCAGTGGACGCGGAAGTTACGGCGGCGCGTTGA
 
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JMSF009A20+           GTGAGCATTGTGTTTCCTCCTGTGGTTTGAGAAGTAGGTGAAGTTGAGGTTGGTGGTGCT
JMSF029P03+           GTGAGCATTGTGTTTCCTCCTGTGGTTTGAGAAGTAGGTGAAGTTGAGGTTGGTGGTGCT
                      ____________________________________________________________
consensus             GTGAGCATTGTGTTTCCTCCTGTGGTTTGAGAAGTAGGTGAAGTTGAGGTTGGTGGTGCT
 
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JMSF009A20+           GTGGTGGAGGCGGCGGTGCTGGTGTTGGTGGAGCGGAAGATGATAGGATGAGAGAGTGAA
JMSF029P03+           GTGNTGGAGGCGGCGGTGCTGGTGTTGGTGGAGCGGAAGATGATAGGATGANAGAGTGAA
                      ____________________________________________________________
consensus             GTGGTGGAGGCGGCGGTGCTGGTGTTGGTGGAGCGGAAGATGATAGGATGAGAGAGTGAA
 
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JMSF009A20+           TTTGGGGCGGCAAAAATTCGCGGTTGCCATTCGAAAGTGTGTAAAGGAATTGAAGTT   
JMSF029P03+           TTTGGGGCGGCAAAAATTCGCGGTTGCCATTCGAAAGTGTGTAAAGGAATTGAAGTTTTC
                      ____________________________________________________________
consensus             TTTGGGGCGGCAAAAATTCGCGGTTGCCATTCGAAAGTGTGTAAAGGAATTGAAGTTTTC