Contig 009399:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS021H02Sequence589009399 (2)ref|XP_004237249.2|6e-42PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5
JMSF029O06Sequence657009399 (2)722016127ref|XP_006350275.1|3e-110PREDICTED: probable polygalacturonase At1g80170-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFS021H02+                                                 CTACAATTGTTCCATCAATCTG
                      ____________________________________________________________
consensus                                                   CTACAATTGTTCCATCAATCTG
 
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JMFS021H02+           GACTATTAAGTTCCCAGCACAGGGCCCTTTGAATCTTGTTGCATTGACTAGGTAACGGCC
                      ____________________________________________________________
consensus             GACTATTAAGTTCCCAGCACAGGGCCCTTTGAATCTTGTTGCATTGACTAGGTAACGGCC
 
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JMFS021H02+           ATCTGATGGAACCAAGAGGACCGATCTTGATATAGAACAAGCTTGTTTCCACGCATCTGA
                      ____________________________________________________________
consensus             ATCTGATGGAACCAAGAGGACCGATCTTGATATAGAACAAGCTTGTTTCCACGCATCTGA
 
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JMFS021H02+           GAAGGCCTTAGTATCATCAGTGACTCCATCACCAACTGCACCGAAGCTATCCACATTGAC
                      ____________________________________________________________
consensus             GAAGGCCTTAGTATCATCAGTGACTCCATCACCAACTGCACCGAAGCTATCCACATTGAC
 
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JMFS021H02+           AAGAACCTTATTCCCACGACCTTTCGTAAACGATGGGAGGTCCAACATCTCAACTCCATC
                      ____________________________________________________________
consensus             AAGAACCTTATTCCCACGACCTTTCGTAAACGATGGGAGGTCCAACATCTCAACTCCATC
 
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JMFS021H02+           ACCTTCTTCCGCTTCCCAGTCCTCAAACTCCTTCAAAACATTAATCTCTTCGTACAAATT
                      ____________________________________________________________
consensus             ACCTTCTTCCGCTTCCCAGTCCTCAAACTCCTTCAAAACATTAATCTCTTCGTACAAATT
 
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JMFS021H02+           CTTCTCGGCACACCCAAGAGTTGTCAGCATGAACACAAGAAAGCACATGATGAAAACCGT
                      ____________________________________________________________
consensus             CTTCTCGGCACACCCAAGAGTTGTCAGCATGAACACAAGAAAGCACATGATGAAAACCGT
 
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JMFS021H02+           TCTTGCCATCATTTATGGGCTCTGGTTGTTCCCTTGTGTTACTTGATTTACATATATCCA
                      ____________________________________________________________
consensus             TCTTGCCATCATTTATGGGCTCTGGTTGTTCCCTTGTGTTACTTGATTTACATATATCCA
 
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JMFS021H02+           GGGAAGCCATTGAGAATTAATTTATATGAAGTGATTAGCACTAACAAATGGAGGATTTAG
JMSF029O06+              AAGCCATTGAGAATTAATTTATATGAAGTGATTAGCACTAACAAATGGAGGATTTAG
                      ____________________________________________________________
consensus             GGGAAGCCATTGAGAATTAATTTATATGAAGTGATTAGCACTAACAAATGGAGGATTTAG
 
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JMFS021H02+           TGGGTTATATGGCTTGGCTTGAAAGTAGATGAAGATGTTGAAATTTTTTACATGCCTACA
JMSF029O06+           TGGGTTATATGGCTTGGCTTGAAAGTAGATGAAGATGTTGAAATTTTTTACATGCCTACA
                      ____________________________________________________________
consensus             TGGGTTATATGGCTTGGCTTGAAAGTAGATGAAGATGTTGAAATTTTTTACATGCCTACA
 
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JMFS021H02+           CTTCAAGTGTAAGAATATTACTATGGA                                 
JMSF029O06+           CTTCAAGTGTAAGAATATTACTATGGACATCTTTGCTTTACTCTTCAGCCATGGCCAAAA
                      ____________________________________________________________
consensus             CTTCAAGTGTAAGAATATTACTATGGACATCTTTGCTTTACTCTTCAGCCATGGCCAAAA
 
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JMSF029O06+           CCACCATTCATCAGTCTAAGTGTTTCCAGATATTCTTTATTTCCCCTATACTGCAAGTCT
                      ____________________________________________________________
consensus             CCACCATTCATCAGTCTAAGTGTTTCCAGATATTCTTTATTTCCCCTATACTGCAAGTCT
 
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JMSF029O06+           GAAATCCATATTATAATACCGGCCATCAACATTTCCCCTTTCAGGCAAGACAATAAATTT
                      ____________________________________________________________
consensus             GAAATCCATATTATAATACCGGCCATCAACATTTCCCCTTTCAGGCAAGACAATAAATTT
 
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JMSF029O06+           TACAATTATCAAGAAATCTATACTAAATTAACCTAACTTTCAACCAATTCATTCCAATCC
                      ____________________________________________________________
consensus             TACAATTATCAAGAAATCTATACTAAATTAACCTAACTTTCAACCAATTCATTCCAATCC
 
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JMSF029O06+           TACAATTTATTAGATATACATCATATATCCAGAAAATAAAATGGTAAATAAATAATATAA
                      ____________________________________________________________
consensus             TACAATTTATTAGATATACATCATATATCCAGAAAATAAAATGGTAAATAAATAATATAA
 
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JMSF029O06+           CCCTTGCCTCTACTCATATTTCTTGTCACTACTGCAAGCTCTGGAATTCGTACCGAGGTT
                      ____________________________________________________________
consensus             CCCTTGCCTCTACTCATATTTCTTGTCACTACTGCAAGCTCTGGAATTCGTACCGAGGTT
 
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JMSF029O06+           TCAGAATTCTCTGCCTCAAGATTCATTGATCTTTCAGCTTCGCTTTCGGGTCGGGCATTT
                      ____________________________________________________________
consensus             TCAGAATTCTCTGCCTCAAGATTCATTGATCTTTCAGCTTCGCTTTCGGGTCGGGCATTT
 
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JMSF029O06+           TGATGAATCAGACAATTGGGTAGCAGCGATATCCAGTATCCACTGCAAGGTGCTTCCCGG
                      ____________________________________________________________
consensus             TGATGAATCAGACAATTGGGTAGCAGCGATATCCAGTATCCACTGCAAGGTGCTTCCCGG
 
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JMSF029O06+           TGTCACCATTTTCCGGCAGCTTCATACCGAAAGGGGGCTGCCGGATGTCCCAAGTCGCGT
                      ____________________________________________________________
consensus             TGTCACCATTTTCCGGCAGCTTCATACCGAAAGGGGGCTGCCGGATGTCCCAAGTCGCGT