| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015L12 | Sequence | 601 | 009398 (7) | emb|CDY36067.1| | 1e-67 | BnaC03g41310D [Brassica napus] | 707 | 019093 | gb|KJB31904.1| | 4e-78 | hypothetical protein B456_005G213700 [Gossypium raimondii] |
| JMSF006N07 | Sequence | 253 | 009398 (7) | 452 | 000298 (6) | ref|XP_011078757.1| | 4e-34 | PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like | |||
| JMSF029N19 | Sequence | 632 | 009398 (7) | gb|KDO77021.1| | 6e-83 | hypothetical protein CISIN_1g022085mg [Citrus sinensis] | 703 | 017183 | ref|XP_011086926.1| | 8e-95 | PREDICTED: phytochrome-associated serine/threonine-protein phosphatase-like iso |
| JMSF035J10 | Sequence | 690 | 009398 (7) | ref|XP_003589796.1| | 2e-109 | Serine/threonine protein phosphatase [Medicago truncatula] | 720 | 009398 (7) | ref|XP_011086926.1| | 1e-95 | PREDICTED: phytochrome-associated serine/threonine-protein phosphatase-like iso |
| JMSF040K08 | Sequence | 695 | 009398 (7) | gb|ACJ85473.1| | 4e-110 | unknown [Medicago truncatula] | 898 | 009398 (7) | gb|KDO77016.1| | 2e-106 | hypothetical protein CISIN_1g022085mg [Citrus sinensis] |
This contig is upended
. : . : . : . : . : . :
rJMSF040K08- TACGGATAAATAAACTATCCAAGAAATCAAAAACTGCTATATTTAGTCAAAAGTCAA
____________________________________________________________
consensus TACGGATAAATAAACTATCCAAGAAATCAAAAACTGCTATATTTAGTCAAAAGTCAA
. : . : . : . : . : . :
rJMSF035J10- AATGACTGCAGGTAATCTCAAGTGTTTACACTGA
rJMSF040K08- AACTAAAATAAACTGAGGCCATACCAAATGACTGCAGGTAATCTCAAGTGTTTACACTGA
____________________________________________________________
consensus AACTAAAATAAACTGAGGCCATACCAAATGACTGCAGGTAATCTCAAGTGTTTACACTGA
. : . : . : . : . : . :
rJMSF035J10- TAACAATGAGAACCAAAATATAGCACGCTACATAGAACTATGAAACAGAAGGGAAACAAA
rJMSF040K08- TAACAATGAGAACCAAAATATAGCACGCTACATAGAACTATGAAACAGAAGGGAAACAAA
____________________________________________________________
consensus TAACAATGAGAACCAAAATATAGCACGCTACATAGAACTATGAAACAGAAGGGAAACAAA
. : . : . : . : . : . :
rJMSF035J10- TATTTGACACTATCTTCGCTACACCCTACAGGGGCACAAACTATTCAGACATGGCAAGGT
rJMSF040K08- TATTTGACACTATCTTTGCTACACCCTACAGGGGCACAAACTATTCAGACATGGCAAGGT
____________________________________________________________
consensus TATTTGACACTATCTTTGCTACACCCTACAGGGGCACAAACTATTCAGACATGGCAAGGT
. : . : . : . : . : . :
rJMSF035J10- TACCGCATCGAGCTTTGGTGCATTAACCATCTTGTTAGAACACCAAGCCACATATATTCA
rJMSF040K08- TACCGCATCGAGCTTTGGTGCATTAACCATCTTGTTAGAACACCAAGCCACATATATTCA
____________________________________________________________
consensus TACCGCATCGAGCTTTGGTGCATTAACCATCTTGTTAGAACACCAAGCCACATATATTCA
. : . : . : . : . : . :
rJMSF035J10- AGTTTCCTCAACCTGACAAATATCTCATTCCAGACGAGTGGAATTAGGTGCAGAAATATA
rJMSF040K08- AGTTTCCTCAACCTGACAAATATCTCATTCCAGACGAGTGGAATTAGGTGCAGAAATATA
____________________________________________________________
consensus AGTTTCCTCAACCTGACAAATATCTCATTCCAGACGAGTGGAATTAGGTGCAGAAATATA
. : . : . : . : . : . :
rJMSF035J10- TTGCAATAACCAATGTAAGAAAATTAACTCATAAGAAATAAGGAACTCCCGTTCTGGGTC
rJMSF040K08- TTGCAATAACCAATGTAAGAAAATTAACTCATAAGAAATAAGGAACTCCCGTTCTGGGTC
____________________________________________________________
consensus TTGCAATAACCAATGTAAGAAAATTAACTCATAAGAAATAAGGAACTCCCGTTCTGGGTC
. : . : . : . : . : . :
rJMSF035J10- CTCTCATTTGGTTGTTTTCTTCAGTTTCGGTGAAGAACTTCACCTCACGCTCCATATTCT
rJMSF040K08- CTCTCATTTGGTTGTTTTCTTCAGTTTCGGTGAAGAACTTCACCTCACGCTCCATATTCT
____________________________________________________________
consensus CTCTCATTTGGTTGTTTTCTTCAGTTTCGGTGAAGAACTTCACCTCACGCTCCATATTCT
. : . : . : . : . : . :
rJMSF035J10- CATTGAAGCTCAAAATGGAAGCTACATTTCCACACCGATAGCAATAATTAGGGGCTGACC
rJMSF040K08- CATTGAAGCTCAAAATGGAAGCTACATTTCCACACCGATAGCAATAATTAGGGGCTGACC
____________________________________________________________
consensus CATTGAAGCTCAAAATGGAAGCTACATTTCCACACCGATAGCAATAATTAGGGGCTGACC
. : . : . : . : . : . :
rJMSF035J10- ACACAGTTACAAGTCCTTTGTCCTGAAACATGTACTTTAGACCTTCCTGGACAAGTTGGT
rJMSF040K08- ACACAGTTACAAGTCCTTTGTCCTGAAACATGTACTTTAGACCTTCCTGGACAAGTTGGT
____________________________________________________________
consensus ACACAGTTACAAGTCCTTTGTCCTGAAACATGTACTTTAGACCTTCCTGGACAAGTTGGT
. : . : . : . : . : . :
rJMSF035J10- GAGCCCGACAAACTAGATCCAGCTTGTTGATATGATTAAACTCAGATGTAACCCTGGACC
rJMSF040K08- GAGCCCGACAAACTAGATCCAGCTTGTTGATATGATTAAACTCAGATGTAACCCTGGACC
____________________________________________________________
consensus GAGCCCGACAAACTAGATCCAGCTTGTTGATATGATTAAACTCAGATGTAACCCTGGACC
. : . : . : . : . : . :
rJMSF035J10- CAAAAAGCCATCCTGCTCCACGAGGACTTACTGCCCATGTTTCAATATCTTCAGGGTCAC
rJMSF040K08- CAAAAAGCCATCCTGCTCCACGAGGACTTACTGCCCATGTTTCAATATCTTCAGGGTCAC
____________________________________________________________
consensus CAAAAAGCCATCCTGCTCCACGAGGACTTACTGCCCATGTTTCAATATCTTCAGGGTCAC
. : . : . : . : . : . :
rJMSF035J10- TCCACATAAGATCACAGAAGGGCCCTTCATGAGGTATCTCACAATTACGTTCAATGATCC
rJMSF040K08- TCCACATAAGATCACAGAAGGGCCCTTCATGAGGTATCTCACAATTACGTTCAATGATCC
____________________________________________________________
consensus TCCACATAAGATCACAGAAGGGCCCTTCATGAGGTATCTCACAATTACGTTCAATGATCC
. : . : . : . : . : . :
rJMSF035J10- TGATCTGATCAATAGTTCTAACAT
rJMSF040K08- TGATCTGATCAATAGTTCTAACATCAGGAGAAAGCCCACCATGGACACATAGTACTGTTC
JMSF040K08+ ACACATAGTACTGNTC
JMSF035J10+ ACACATAGTACTGTTC
____________________________________________________________
consensus TGATCTGATCAATAGTTCTAACATCAGGAGAAAGCCCACCATGGACACATAGTACTGTTC
. : . : . : . : . : . :
rJMSF040K08- CATCTATAAATCGCAGAGAGAGTAAGATAGTCNAATACATCGGTGCAATACCGCCNAGCA
JMSF040K08+ CATCTAT-AATCGCAGAGAGAGTAAGATAGTCAAATACATCGGTGCAATACCGCCAAGCA
JMSF035J10+ CATCTAT-AATCGCAGAGAGAGTAAGATAGTCAAATACATCGGTGCAATACCGCCAAGCA
____________________________________________________________
consensus CATCTAT-AATCGCAGAGAGAGTAAGATAGTCAAATACATCGGTGCAATACCGCCAAGCA
. : . : . : . : . : . :
rJMSF040K08- T
JMSF040K08+ TTGGCATTTCCATACTTTCTTTGGCATTCATCATAGAAACCATAAACCTGAGTCAGTTGC
JMSF035J10+ TTGGCATTTCCATACTTTCTTTGGCATTCATCATAGAAACCATAAACCTGAGTCAGTTGC
JMFF015L12+ CATTTCCATACTTCCTTTGGCATTCATCATAGAAACCATACACCTGTGTTAGTTGC
JMSF029N19+ TCATCATAGAAACCATACACCTGTGTTAGTTGC
____________________________________________________________
consensus TTGGCATTTCCATACTTTCTTTGGCATTCATCATAGAAACCATACACCTGTGTTAGTTGC
. : . : . : . : . : . :
JMSF040K08+ CTGCTTTCATGGTTTCCACGTAAAAGAGTAATATTAGCTGGATATCTTGCTTTAAGGAGC
JMSF035J10+ CTGCTTTCATGGTTTCCACGTAAAAGAGTAATATTAGCTGGATATCTTGCTTTAAGGAGC
JMFF015L12+ CTGCTTTCATGATTTCCACGTAAAAGAGTAATATTAGCTGGATACCTTGCCTTAAGGAGC
JMSF029N19+ CTGCTTTCATGATTTCCACGTAAAAGAGTAATATTAGCTGGATACCTTGCCTTAAGGAGC
____________________________________________________________
consensus CTGCTTTCATGGTTTCCACGTAAAAGAGTAATATTAGCTGGATATCTTGCTTTAAGGAGC
. : . : . : . : . : . :
JMSF040K08+ AAAAGAATAGTGAAAACTTCTAGAC-TATTATATCCACGGTCAACAAAATCTCCCATAAA
JMSF035J10+ AAAAGAATAGTGAAAACTTCTAGAC-TATTATATCCACGGTCAACAAAATCTCCCATAAA
JMFF015L12+ AAAAGAATCGTGAAAACTTCTAGACTTATTATATCCACGATCAACAAAATCACCCATGAA
JMSF029N19+ AAAAGAATCGTGAAAACTTCTAGAC-TATTATATCCACGATCAACAAAATCACCCATGAA
____________________________________________________________
consensus AAAAGAATCGTGAAAACTTCTAGAC-TATTATATCCACGGTCAACAAAATCTCCCATGAA
. : . : . : . : . : . :
JMSF040K08+ AATATAATTCTTTTCTGGAACATGACCTCCAGTCTGGAAGAGTTTCATTAAGTCATGAAA
JMSF035J10+ AATATAATTCTTTTCTGGAACATGACCTCCAGTCTGGAAGAGTTTCATTAAGTCATGAAA
JMFF015L12+ AATATAATTCGTTTCTGGTACATGACCTCCTGTCTGGAAAAGTTTCATTAAATCATGAAA
JMSF029N19+ AATATAATTCGTTTCTGGTACATGACCTCCTGTCTGGAAAAGTTTCATTAAATCATGAAA
____________________________________________________________
consensus AATATAATTCTTTTCTGGTACATGACCTCCTGTCTGGAAGAGTTTCATTAAGTCATGAAA
. : . : . : . : . : . :
JMSF040K08+ CTGGCCATGTATGTCACCACAAACAGTAACTGGGCTGTTAACAGGCTGCACATTTGACTC
JMSF035J10+ CTGGCCATGTATGTCACCACAAACAGTAACTGGGCTGTTAACAGGCTGCACATTTGACTC
JMFF015L12+ CTGGCCATGTATGTCCCCACAAACTGTAACTGGACTATTAACAGGCTGCACATTTGACTC
JMSF029N19+ CTGGCCATGTATGTCCCCACAAACTGTAACTGGACTATTAACAGGCTGCACATTTGACTC
____________________________________________________________
consensus CTGGCCATGTATGTCCCCACAAACTGTAACTGGGCTGTTAACAGGCTGCACATTTGACTC
. : . : . : . : . : . :
JMSF040K08+ CTCGATTAGGATCTCTTTCACATATTCACATAGAAGCTGAAGCTCATCCTCGGATAAGTG
JMSF035J10+ CTCGATTAGGATCTCTTTCACATATTCACATAGAAGCTGAAGCTCATCCTCGGATAAGTG
JMFF015L12+ CTCAATTAGGATCTCTTTCACATATTCGCATAGAAGCTGAAGCTCGTCCTCGGCTAAGTG
JMSF029N19+ CTCAATTAGGATCTCTTTCACATATTCGCATAGAAGCTGAAGCTCGTCCTCGGCTAAGTG
____________________________________________________________
consensus CTCGATTAGGATCTCTTTCACATATTCGCATAGAAGCTGAAGCTCGTCCTCGGCTAAGTG
. : . : . : . : . : . :
JMSF040K08+ CTGACCGTCCTTCACCTTCACTATCCACTGGTCCAAATCCATTTTA
JMSF035J10+ CTGACCGTCCTTCACCTTCACTATCCACTGGTCCAAATCCATTTTA
JMFF015L12+ CTGACCCTCTTTCACCTTCGCTATCCATTGGTCCAAATCCATTTTACCAGAATTTATCGT
JMSF006N07+ GCTATCCATTGGTCCAAATCCATTTTACCAGAATTTATCGT
JMSF029N19+ CTGACCCTCTTTCACCTTCGCTATCCATTGGTCCAAATCCATTTTACCAGAATTTATCGT
____________________________________________________________
consensus CTGACCGTCTTTCACCTTCGCTATCCATTGGTCCAAATCCATTTTACCAGAATTTATCGT
. : . : . : . : . : . :
JMFF015L12+ ACCTCTTCTTCAATCCCTATCAGCTCACTTCAGGAGTCAATTGATCGCCAGTCACTATTT
JMSF006N07+ ACCTCTTCTTCAATCCCTATCAGCTCACTTCAGGAGTCAATTGATCGCCAGTCACTATTT
JMSF029N19+ ACCTCTTCTTCAATCCCTATCAGCTCACTTCAGGAGTCAATTGATCGCCAGTCACTATTT
____________________________________________________________
consensus ACCTCTTCTTCAATCCCTATCAGCTCACTTCAGGAGTCAATTGATCGCCAGTCACTATTT
. : . : . : . : . : . :
JMFF015L12+ CCGTCTTCTGTAGATCAGAAGCCCAAGTTGCAGGAAGCGAAAGGAGAGAGCAGAGACAAT
JMSF006N07+ CCGTCTTCTGTAGATCAGAAGCCCAAGTTGCAGGAAGCGAAAGGAGAGAGCAGAGACAAT
JMSF029N19+ CCGTCTTCTGTAGATCAGAAGCCCAAGTTGCAGGAAGCGAAAGGAGAGAGCAGAGACAAT
____________________________________________________________
consensus CCGTCTTCTGTAGATCAGAAGCCCAAGTTGCAGGAAGCGAAAGGAGAGAGCAGAGACAAT
. : . : . : . : . : . :
JMFF015L12+ AGTACTTGAGCTTGTAGATTCCTTGAATTTTTGAAACCCTGGCTGGCTCGCCCTGTGTC
JMSF006N07+ AGTACTTGAGCTTGTAGATTCCTTGAATTTTTGAAACCCTGGCTGGCTCGCCCTGTGTCT
JMSF029N19+ AGTACTTGAGCTTGTAGATTCCTTGAATTTTTGAAACCCTGGCTGGCTCGCCCTGTGTCT
____________________________________________________________
consensus AGTACTTGAGCTTGTAGATTCCTTGAATTTTTGAAACCCTGGCTGGCTCGCCCTGTGTCT
. : . : . : . : . : . :
JMSF006N07+ CTCTTCCTCTCCCTCCCCCTCTGGCCCTCTC
JMSF029N19+ CTCTTCCTCTCCCTCCCCCTCTGGCCCTCTCACTTCTTCAGATGCAACTCTCGTTTCTTC
____________________________________________________________
consensus CTCTTCCTCTCCCTCCCCCTCTGGCCCTCTCACTTCTTCAGATGCAACTCTCGTTTCTTC