Contig 009392:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS035D10Sequence592009392 (4)ref|XP_006359790.1|2e-45PREDICTED: putative late blight resistance protein homolog R1B-17-like [Solanum
JMFS081A03Sequence599009392 (4)ref|XP_006359790.1|9e-47PREDICTED: putative late blight resistance protein homolog R1B-17-like [Solanum
JMSF029B02Sequence676009392 (4)ref|XP_006359790.1|1e-57PREDICTED: putative late blight resistance protein homolog R1B-17-like [Solanum735014115 (2)ref|XP_011070823.1|5e-50PREDICTED: putative late blight resistance protein homolog R1B-17 [Sesamum indi
JMSF047K02Sequence687009392 (4)ref|XP_004238948.1|5e-71PREDICTED: putative late blight resistance protein homolog R1B-16 [Solanum lyco759014115 (2)ref|XP_011070823.1|4e-50PREDICTED: putative late blight resistance protein homolog R1B-17 [Sesamum indi

Alignment

This contig is upended


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JMSF047K02+                                           AAACTTTCATCATGGNTCAGAAACTTCA
                      ____________________________________________________________
consensus                                             AAACTTTCATCATGGNTCAGAAACTTCA
 
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JMSF047K02+           GGTCGTGAGGCTGACCATTAGAAGTGGCACGCGATGCCACATTGCCCTGACGGGTAGTTA
                      ____________________________________________________________
consensus             GGTCGTGAGGCTGACCATTAGAAGTGGCACGCGATGCCACATTGCCCTGACGGGTAGTTA
 
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JMSF047K02+           ACAACACTCGACTTTTCTTCTTGTTGTTGGGGAAAGCTATTTTCAAAAGCTTCCAGTCTT
                      ____________________________________________________________
consensus             ACAACACTCGACTTTTCTTCTTGTTGTTGGGGAAAGCTATTTTCAAAAGCTTCCAGTCTT
 
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JMSF047K02+           TTTCTTCCCACACATCATCAAGCACAATCAAGTACTTTCCACTCTCCAAGAACTTGCTTA
                      ____________________________________________________________
consensus             TTTCTTCCCACACATCATCAAGCACAATCAAGTACTTTCCACTCTCCAAGAACTTGCTTA
 
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JMSF047K02+           TTTTTTCAGCCAATTGCTCTTCGGTCATATCGTGGTAGTCCTTGGTGCGTTGGGTGAAAA
                      ____________________________________________________________
consensus             TTTTTTCAGCCAATTGCTCTTCGGTCATATCGTGGTAGTCCTTGGTGCGTTGGGTGAAAA
 
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JMSF047K02+           TGCTCAGTATGTTGAGAAATATGTCCTTCCTATTGTAAGACCGCGAAACATAAACCCAAT
                      ____________________________________________________________
consensus             TGCTCAGTATGTTGAGAAATATGTCCTTCCTATTGTAAGACCGCGAAACATAAACCCAAT
 
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JMSF047K02+           GGCGAGTAAAGAACTCATATTCAATCTCAGAATCCTTGAACACTTTTCTAGCTAATGTGG
JMSF029B02+                                                       TTTCTAGCTAATGTGG
                      ____________________________________________________________
consensus             GGCGAGTAAAGAACTCATATTCAATCTCAGAATCCTTGAACACTTTTCTAGCTAATGTGG
 
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JMSF047K02+           TTTTACCAAGACCAGGCATGCCAAAGATCGAGACGACTTCTAAGTCATCCGATCCCCCAA
JMFS081A03+                                                      GTCATCCGATCCCCCAA
JMFS035D10+                                                      GTCATCCGATCCCCCAA
JMSF029B02+           TTTTACCAAGACCAGGCATGCCAAAGATCGAGACGACTTCTAAGTCATCCGATCCCCCAA
                      ____________________________________________________________
consensus             TTTTACCAAGACCAGGCATGCCAAAGATCGAGACGACTTCTAAGTCATCCGATCCCCCAA
 
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JMSF047K02+           TCAGACGATCAATTATGGTCTTTGCCTCTCCATCAAACCCCACAACATCATCTTCTTCAA
JMFS081A03+           TCAGACGATCAATTATGGTCTTTGCCTCTCCATCAAACCCCACAACATCATCTTCTTCAA
JMFS035D10+           TCGGACGATCAATTATGGTCTTTGCCTCTCCATCAAACCCCACAACATCATCTTCTTCAA
JMSF029B02+           TCAGACGATCAATTATGGTCTTTGCCTCTCCATCAAACCCCACAACATCATCTTCTTCAA
                      ____________________________________________________________
consensus             TCAGACGATCAATTATGGTCTTTGCCTCTCCATCAAACCCCACAACATCATCTTCTTCAA
 
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JMSF047K02+           CCACCGGAGCCTTTCTC---GCAGCATCTTTGGATGCATTATCCATCTGCAAAGCTTGAA
JMFS081A03+           CCACCGGAGCCTTTCTCTCTGCAGCATCTTTGGATGCATTATCCATCTGCAAAGCTTGAA
JMFS035D10+           CCACCGGAGCCTTTCTCTCTGCAGCATCTTTGGATGCATTATCCATCTGCAAAGCTTGAA
JMSF029B02+           CCACCGGAGCCTTTCTCTCTGCAGCATCTTTGGATGCATTATCCATCTGCAAAGCTTGAA
                      ____________________________________________________________
consensus             CCACCGGAGCCTTTCTCTCTGCAGCATCTTTGGATGCATTATCCATCTGCAAAGCTTGAA
 
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JMSF047K02+           GGCCATAGGCATTATTCTGGCGAATCGCCCTCACTTCATTCCTTATAGATTCAATCTCTC
JMFS081A03+           GGCCATAGGCATTATTCTGGCGAATCGCCCTCACTTCATTCCTTATAGATTCAATCTCTC
JMFS035D10+           GGCCATAGGCATTATTCTGGCGAATCGCCCTCACTTCATTCCTTATAGATTCAATCTCTC
JMSF029B02+           GGCCATAGGCATTATTCTGGCGAATCGCCCTCACTTCATTCCTTATAGATTCAATCTCTC
                      ____________________________________________________________
consensus             GGCCATAGGCATTATTCTGGCGAATCGCCCTCACTTCATTCCTTATAGATTCAATCTCTC
 
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JMSF047K02+           TTGCGGCGGCGTTGACTTTGACCAGGTGAGCCGGTTTATCCACGTACCGGGTCATCATCC
JMFS081A03+           TTGCGGCGGCGTTGACTTTGACCAGGTGAGCCGGTTTATCCACGTACCGGGTCATCATCC
JMFS035D10+           TTGCGGCGGCGTTGACTTTGACCAGGTGAGCCGGTTTATCCACGTACCGGGTCATCATCC
JMSF029B02+           TTGCGGCGGCGTTGACTTTGACCAGGTGAGCCGGTTTATCCACGTACCGGGTCATCATCC
                      ____________________________________________________________
consensus             TTGCGGCGGCGTTGACTTTGACCAGGTGAGCCGGTTTATCCACGTACCGGGTCATCATCC
 
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JMFS081A03+           CTTTGGACCGGTGGAGCTTCGCCTCCACCACGAACTTGTCGATGGCGTCCTCCGCCTTGT
JMFS035D10+           CTTTGGACCGGTGGAGCTTCGCCTCCACCACGAACTTGTCGATGGCGTCCTCCGCCTTGT
JMSF029B02+           CTTTGGACCGGTGGAGCTTCGCCTCCACCACGAACTTGTCGATGGCGTCCTCCGCCTTGT
                      ____________________________________________________________
consensus             CTTTGGACCGGTGGAGCTTCGCCTCCACCACGAACTTGTCGATGGCGTCCTCCGCCTTGT
 
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JMFS081A03+           TCACGGCGATCCTGATCTTCTTCACCAGCTCCTTGATCACCTCGTTCTGGCTGCGCCGCC
JMFS035D10+           TCACGGCGATCCTGATCTTCTTCACCAGCTCCTTGATCACCTCGTTCTGGCTGCGCCGCC
JMSF029B02+           TCACGGCGATCCTGATCTTCTTCACCAGCTCCTTGATCACCTCGTTCTGGCTGCGCCGCC
                      ____________________________________________________________
consensus             TCACGGCGATCCTGATCTTCTTCACCAGCTCCTTGATCACCTCGTTCTGGCTGCGCCGCC
 
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JMFS081A03+           GCGCCGCCTCCTTGAGGAACGCCTTGAAGTCGCCCAGGTCGCCCAGGAGGCTCTCCGCTT
JMFS035D10+           GCGCCGCCTCCTTGAGGAACGCCTTGAAGTCGCCCAGGTCGCCCAGGAGGCTCTCCGCTT
JMSF029B02+           GCGCCGCCTCCTTGAGGAACGCCTTGAAGTCGCCCAGGTCGCCCAGGAGGCTCTCCGCTT
                      ____________________________________________________________
consensus             GCGCCGCCTCCTTGAGGAACGCCTTGAAGTCGCCCAGGTCGCCCAGGAGGCTCTCCGCTT
 
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JMFS081A03+           GCTCCTTTATTCCGAAGATGAGCTCCGCGTTGTCCCGGAGGAGCTGTAGAAGATTCTCCA
JMFS035D10+           GCTCCTTTATTCCGAAGATGAGCTCCGCGTTGTCCCGGAGGAGCTGTAGAAGATTCTCCA
JMSF029B02+           GCTCCTTTATTCCGAAGATGAGCTCCGCGTTGTCCCGGAGGAGCTGTAGAAGATTCTCCA
                      ____________________________________________________________
consensus             GCTCCTTTATTCCGAAGATGAGCTCCGCGTTGTCCCGGAGGAGCTGTAGAAGATTCTCCA
 
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JMFS081A03+           CCAGGAACTGCACGGCCGCGTCCGCCATGGCTGGGGATCTGCGGCGGCGAGAGGCTCAGG
JMFS035D10+           CCAGGAACTGCACGGCCGCGTCCGCCATGGCTGGGGATCTGCGGCGGCGAGAGGCTCAGG
JMSF029B02+           CCAGGAACTGCACGGCCGCGTCCGCCATGGCTGGGGATCTGCGGCGGCGAGAGGCTCAGG
                      ____________________________________________________________
consensus             CCAGGAACTGCACGGCCGCGTCCGCCATGGCTGGGGATCTGCGGCGGCGAGAGGCTCAGG
 
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JMFS081A03+           AACGTTGACTGAAAGTCTACTTCTTGTTTCTTGGTCTTTGGT                  
JMFS035D10+           AACGTTGACTGAAAGTCTACTTCTTGTTTCTTG                           
JMSF029B02+           AACGTTGACTGAAAGTCTACTTCTTGTTTCTTGGTCTTTGGTGATGGAGTGGGAATAATC
                      ____________________________________________________________
consensus             AACGTTGACTGAAAGTCTACTTCTTGTTTCTTGGTCTTTGGTGATGGAGTGGGAATAATC