Contig 009386:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049D14Sequence649009386 (2)ref|XP_002515097.1|1e-108dicer-1, putative [Ricinus communis] gb|EEF47081.1| dicer-1, putative [Ricinus c603009844 (3)emb|CBI38729.3|1e-42unnamed protein product [Vitis vinifera]
JMSF028I20Sequence652009386 (2)ref|XP_011071730.1|3e-101PREDICTED: endoribonuclease Dicer homolog 1 isoform X2 [Sesamum indicum]784009844 (3)emb|CBI38729.3|1e-81unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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JMFF049D14+                GGAAGATGGACGTGAAGCATGAGTAATTGCTTCAACCAGTAGACCTTTATCATTG
                      ____________________________________________________________
consensus                  GGAAGATGGACGTGAAGCATGAGTAATTGCTTCAACCAGTAGACCTTTATCATTG
 
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JMFF049D14+           AACTTAATGTTCAAAGCACATTCCAGTGCGTCAAAGTCAACACTCCTTAGTATATTCTCG
                      ____________________________________________________________
consensus             AACTTAATGTTCAAAGCACATTCCAGTGCGTCAAAGTCAACACTCCTTAGTATATTCTCG
 
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JMFF049D14+           GGAATGTTACTTGGGCAAATTTTGTTGTTAATATCGTTAGAATTAAAATCAATCTGAATT
                      ____________________________________________________________
consensus             GGAATGTTACTTGGGCAAATTTTGTTGTTAATATCGTTAGAATTAAAATCAATCTGAATT
 
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JMFF049D14+           CCAATCCATTTCATTAAGTGGTTTGCTGAATGCTTTCCACCTTCAACATAATACACACCA
                      ____________________________________________________________
consensus             CCAATCCATTTCATTAAGTGGTTTGCTGAATGCTTTCCACCTTCAACATAATACACACCA
 
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JMFF049D14+           ATAAGTGCTTCCACAACATCAGCCAGTGTCTTACTAGAGAGAACACGATATGAACTTGAA
                      ____________________________________________________________
consensus             ATAAGTGCTTCCACAACATCAGCCAGTGTCTTACTAGAGAGAACACGATATGAACTTGAA
 
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JMFF049D14+           TCATTCTCAAGCTCACCATCTTCTGTTTCCTCATCTCCATATCCAGCAACATCATGGTAT
                      ____________________________________________________________
consensus             TCATTCTCAAGCTCACCATCTTCTGTTTCCTCATCTCCATATCCAGCAACATCATGGTAT
 
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JMFF049D14+           GTTTCTGCTCTAGTTGCATTAAGTATTTCATGATCAAATAAGGATGATTCTCCTTCATAT
                      ____________________________________________________________
consensus             GTTTCTGCTCTAGTTGCATTAAGTATTTCATGATCAAATAAGGATGATTCTCCTTCATAT
 
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JMFF049D14+           GTGTCCTCATCAAACACAGGTGGAACACCAGGGGCAGCCCATCTTGATGGAGAGAACCGA
                      ____________________________________________________________
consensus             GTGTCCTCATCAAACACAGGTGGAACACCAGGGGCAGCCCATCTTGATGGAGAGAACCGA
 
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JMFF049D14+           TCTGCTTGAATGTATGACTGAAGTCCTTTGTTCAAGGCAAACTGATATAACACCATATTA
JMSF028I20+                   AATGTATGACTGAAGTCCTTTGTTCAAGGCAAACTGATATAACACCATATTA
                      ____________________________________________________________
consensus             TCTGCTTGAATGTATGACTGAAGTCCTTTGTTCAAGGCAAACTGATATAACACCATATTA
 
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JMFF049D14+           CTGACCATTTGCTGCCGCATTCTGGTAAGTTGACCTTCATGTTTTTGGGGATACTTGAGA
JMSF028I20+           CTGACCATTTGCTGCCGCATTCTGGTAAGTTGACCTTCATGTTTTTGGGGATACTTGAGA
                      ____________________________________________________________
consensus             CTGACCATTTGCTGCCGCATTCTGGTAAGTTGACCTTCATGTTTTTGGGGATACTTGAGA
 
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JMFF049D14+           AAAAGGAATCGACTAACAACCCACTTTAAATAAGCATCTCCAAGCAGCTCTGCT      
JMSF028I20+           AAAAGGAATCGACTAACAACCCACTTTAAATAAGCATCTCCAAGAAGCTCTGCTCTTTCA
                      ____________________________________________________________
consensus             AAAAGGAATCGACTAACAACCCACTTTAAATAAGCATCTCCAAGCAGCTCTGCTCTTTCA
 
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JMSF028I20+           TAACAGACCGTCTCTTGGCAAGAAGCAGCTGTCAAAGCTTCCAAGATCTTTGAAGCAGGG
                      ____________________________________________________________
consensus             TAACAGACCGTCTCTTGGCAAGAAGCAGCTGTCAAAGCTTCCAAGATCTTTGAAGCAGGG
 
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JMSF028I20+           ACAGGGTAGCTTATGATATCCTTAAGCTGCACAGCAAGTAGCATGCTTTCAACTCTCCTC
                      ____________________________________________________________
consensus             ACAGGGTAGCTTATGATATCCTTAAGCTGCACAGCAAGTAGCATGCTTTCAACTCTCCTC
 
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JMSF028I20+           ATTATAGAGGGCAATCTCTGAGCACCACGAACCAGGGATCCAGGAAGTGGATGCACAAAA
                      ____________________________________________________________
consensus             ATTATAGAGGGCAATCTCTGAGCACCACGAACCAGGGATCCAGGAAGTGGATGCACAAAA
 
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JMSF028I20+           CAGAGCTCAGGAGGGAGAAAAACATAATATGTTTTGTCAATAATCTCCTCAGATTCACCT
                      ____________________________________________________________
consensus             CAGAGCTCAGGAGGGAGAAAAACATAATATGTTTTGTCAATAATCTCCTCAGATTCACCT
 
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JMSF028I20+           TCTGAATGTTCAAATCGAGGGGAAAGAAGGTTCTTGCAATATGAAACACCACGGCATCTT
                      ____________________________________________________________
consensus             TCTGAATGTTCAAATCGAGGGGAAAGAAGGTTCTTGCAATATGAAACACCACGGCATCTT
 
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JMSF028I20+           AGTAGAGGTTGTTGTCTATACAACAAGTCAACTCCATATCTGTATACAATTTGAACTGAA
                      ____________________________________________________________
consensus             AGTAGAGGTTGTTGTCTATACAACAAGTCAACTCCATATCTGTATACAATTTGAACTGAA
 
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JMSF028I20+           CAGTTAAATGCACAATCTGTTGTACTAGAAGAAATAGCATTTTCCCAATCAGGACTTCCT
                      ____________________________________________________________
consensus             CAGTTAAATGCACAATCTGTTGTACTAGAAGAAATAGCATTTTCCCAATCAGGACTTCCT
 
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JMSF028I20+           AAACTACTTCAAGTGGGAAAATACAGGAAAGACAAGTTTCTGTATCCTTAGAAAAACACC
                      ____________________________________________________________
consensus             AAACTACTTCAAGTGGGAAAATACAGGAAAGACAAGTTTCTGTATCCTTAGAAAAACACC