Contig 009374:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015L12Sequence498009374 (2)ref|XP_006471307.1|145PREDICTED: uncharacterized protein LOC102611747 [Citrus sinensis]777021421ref|XP_002532007.1|6e-16conserved hypothetical protein [Ricinus communis] gb|EEF30380.1| conserved hypot
JMSF027J06Sequence643009374 (2)ref|XP_006471307.1|165PREDICTED: uncharacterized protein LOC102611747 [Citrus sinensis]722023548ref|XP_006467327.1|141PREDICTED: uncharacterized protein LOC102625297 [Citrus sinensis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027J06+                            GATATGCGGCCATTAAAGTCTTTAGCAAAATTCTTCCTCCAAT
                      ____________________________________________________________
consensus                              GATATGCGGCCATTAAAGTCTTTAGCAAAATTCTTCCTCCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027J06+           TCCAAATCACCTTTCCACATGTGCCTATTCTGTCAAGGAGGTGGTAACCACGAGACCGAG
                      ____________________________________________________________
consensus             TCCAAATCACCTTTCCACATGTGCCTATTCTGTCAAGGAGGTGGTAACCACGAGACCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015L12+                              TTCTCTACAAATTGAATCCCTGAGCCACATATTTTCGAACC
JMSF027J06+           CCCAGCTTTGAATCATTATTTCTCTACAAATTGAATCCCTGAGCCACATATTTTCGAACC
                      ____________________________________________________________
consensus             CCCAGCTTTGAATCATTATTTCTCTACAAATTGAATCCCTGAGCCACATATTTTCGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015L12+           GGAACCTGCCTTTGGGAGTGGGAATATCCGGAGTAAGTAATTGGAGATGAAGGGGCGAGT
JMSF027J06+           GGAACCTGCCTTTGGGAGTGGGAATATCCGGAGTAAGTAATTGGAGATGAAGGGGCGAGT
                      ____________________________________________________________
consensus             GGAACCTGCCTTTGGGAGTGGGAATATCCGGAGTAAGTAATTGGAGATGAAGGGGCGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015L12+           GGTCACTCTTGGTGGCAATAATAGAACTAGCCATCGCCTGAGAGAATGAGTCGCGCCACG
JMSF027J06+           GGTCACTCTTGGTGGCAATAATAGAACTAGCCATCGCCTGAGAGAATGAGTCGCGCCACG
                      ____________________________________________________________
consensus             GGTCACTCTTGGTGGCAATAATAGAACTAGCCATCGCCTGAGAGAATGAGTCGCGCCACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015L12+           AATCCGAAACGAGGATTCGGTCCAACTTGGCTTCCACCCAGTTCGCTGTGCCCTTAGATC
JMSF027J06+           AATCCGAAACGAGGATTCGGTCCAACTTGGCTTCCACCCAGTTCGCTGTGCCCTTAGATC
                      ____________________________________________________________
consensus             AATCCGAAACGAGGATTCGGTCCAACTTGGCTTCCACCCAGTTCGCTGTGCCCTTAGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015L12+           GTTCCCATGTAAATTGATGAACTTGAAAAGGAAAATCACTCAGTCCGCTACATTCAACTA
JMSF027J06+           GTTCCCATGTAAATTGATGAACTTGAAAAGGAAAATCACTCAGTCCGCTACATTCAACTA
                      ____________________________________________________________
consensus             GTTCCCATGTAAATTGATGAACTTGAAAAGGAAAATCACTCAGTCCGCTACATTCAACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015L12+           CGTCAGAGAAGCCTTCGATAAGTCTCCTTGGCTGGTGATTGCCCCCTCTCTTCTCGTCTG
JMSF027J06+           CGTCAGAGAAGCCTTCGATAAGTCTCCTTGGCTGGTGATTGCCCCCTCTCTTCTCGTCTG
                      ____________________________________________________________
consensus             CGTCAGAGAAGCCTTCGATAAGTCTCCTTGGCTGGTGATTGCCCCCTCTCTTCTCGTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015L12+           GGCTAAGGATGTCATTGAAGTCACCCATAACTACCTAAGGGAGAGAGTTGACAGTAGATA
JMSF027J06+           GGCTAAGGATGTCATTGAAGTCACCCATAACTACCTAAGGGAGAGAGTTGACAGTAGATA
                      ____________________________________________________________
consensus             GGCTAAGGATGTCATTGAAGTCACCCATAACTACCTAAGGGAGAGAGTTGACAGTAGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015L12+           AGTGCTTCAAAAGGTTCCGTGATTCAGCTCGCCTGTGTCTTTCCGGGACTCCATAGAATC
JMSF027J06+           AGTGCTTCAAAAGGTTCCGTGATTCAGCTCGCCTGTGTCTTTCCGGGACTCCATAGAATC
                      ____________________________________________________________
consensus             AGTGCTTCAAAAGGTTCCGTGATTCAGCTCGCCTGTGTCTTTCCGGGACTCCATAGAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015L12+           TGGTGAATCTCCATTTGGTCCCACCGACGCTTAGA                         
JMSF027J06+           TGGTGAATCTCCATTTGGTCCCACCGACGCTTAGATAGACCTCTGCGTCAATGTGATGCC
                      ____________________________________________________________
consensus             TGGTGAATCTCCATTTGGTCCCACCGACGCTTAGATAGACCTCTGCGTCAATGTGATGCC