Contig 009365:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP020A05Sequence300009365 (8)ref|XP_006357654.1|2e-13PREDICTED: uncharacterized protein LOC102599960 isoform X2 [Solanum tuberosum]
JMSF001O12Sequence236009365 (8)712009365 (8)emb|CDP13853.1|8e-50unnamed protein product [Coffea canephora]
JMSF006L08Sequence344009365 (8)
JMSF013C10Sequence230009365 (8)798004219 (4)ref|XP_006357653.1|2e-34PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum]
JMSF019I15Sequence548009365 (8)ref|XP_009801445.1|5e-14PREDICTED: ribosomal biogenesis protein LAS1L-like [Nicotiana sylvestris]787004219 (4)ref|XP_006357653.1|2e-34PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum]
JMSF026N09Sequence667009365 (8)ref|XP_006357653.1|5e-27PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum]680004219 (4)ref|XP_009626552.1|6e-41PREDICTED: pre-rRNA-processing protein las1 [Nicotiana tomentosiformis]
JMSF051G17Sequence595009365 (8)ref|XP_006357653.1|6e-27PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum]724004219 (4)ref|XP_006357653.1|1e-34PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF001O12- CTTTTGTCACATGCCAACATATTTAGTT
                      ____________________________________________________________
consensus CTTTTGTCACATGCCAACATATTTAGTT
 
. : . : . : . : . : . :
rJMSF001O12- ATTTACAAAAAACTCAAGAATAATTGATCATAAACTTTGCAAAGGGTTTATGCAGAACTG
                      ____________________________________________________________
consensus ATTTACAAAAAACTCAAGAATAATTGATCATAAACTTTGCAAAGGGTTTATGCAGAACTG
 
. : . : . : . : . : . :
rJMSF001O12- CACACCGTGGCGGACATCAATCAGCATACGGGGAATGCCAATTGCATAAGCTGCCTCAGC
                      ____________________________________________________________
consensus CACACCGTGGCGGACATCAATCAGCATACGGGGAATGCCAATTGCATAAGCTGCCTCAGC
 
. : . : . : . : . : . :
rJMSF001O12- TATTGAAAGCTCGTTCTTCTTGCGGTTCTTCTCAATAACTCCATTTACTAACCTGGTAAT
JMSF051G17+ TGGTAAT
JMSF026N09+ TGGTAAT
                      ____________________________________________________________
consensus TATTGAAAGCTCGTTCTTCTTGCGGTTCTTCTCAATAACTCCATTTACTAACCTGGTAAT
 
. : . : . : . : . : . :
rJMSF001O12- TGCCATAGAATATAGCATAGCCAGCATTTCTTCCGATAGCTGCACACTTTTGGGTACATC
JMSF051G17+ TGCCATAGAATATAGCATAGCCAGCATTTGTTCCGATAGCTGCACACTTTTGGGTACATC
JMSF026N09+ TGCCATAGAATATAGCATAGCCAGCATTTCTTCCGATAGCTGCACACTTTTGGGTACATC
                      ____________________________________________________________
consensus TGCCATAGAATATAGCATAGCCAGCATTTCTTCCGATAGCTGCACACTTTTGGGTACATC
 
. : . : . : . : . : . :
rJMSF001O12- ATCTCTGAAATATGGATCTTTCTGCTGAATTTCGATGATTGAAGCGGTAACATCGACAGC
JMCP020A05+ GATTGAAGCGGTAAgtagcACAcg
JMSF051G17+ ATCTCTGAAATATGGATCTTTCTGCTGAATTTCGATGATTGAAGCGGTAACATCGACAGC
JMSF019I15+ TTTCGATGATTGAAGCGGTAACATCGACAGC
JMSF026N09+ ATCTCTGAAATATGGATCTTTCTGCTGAATTTCGATGATTGAAGCGGTAACATCGACAGC
                      ____________________________________________________________
consensus ATCTCTGAAATATGGATCTTTCTGCTGAATTTCGATGATTGAAGCGGTAACATCGACAGC
 
. : . : . : . : . : . :
rJMSF001O12- GACTGGAATGCATCCTCTGTTCCTCCAAGTCGAAATCCTTCTAAGTGCGGAATCAACGGA
JMCP020A05+ ctgacGAATGCATggagacTTggaCCAtcagcAAATCgaagaAAGTcCAGAATCAACGGA
JMSF051G17+ GACTGGAATGCATCCTCTGTTCCTCCAAGTCGAAATCCTTCTAAGTGCAGAATCAACGGA
JMSF019I15+ GACTGGAATGCATCCTCTGTTCCTCCAAGTCGAAATCCTTCTAAGTGCAGAATCAACGGA
JMSF026N09+ GACTGGAATGCATCCTCTGTTCCTCCAAGTCGAAATCCTTCTAAGTGCAGAATCAACGGA
                      ____________________________________________________________
consensus GACTGGAATGCATCCTCTGTTCCTCCAAGTCGAAATCCTTCTAAGTGCAGAATCAACGGA
 
. : . : . : . : . : . :
rJMSF001O12- AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
JMCP020A05+ AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
JMSF051G17+ AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
JMSF019I15+ AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
JMSF026N09+ AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
                      ____________________________________________________________
consensus AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
 
. : . : . : . : . : . :
rJMSF001O12- AGGCACCAACTTCAAGCCCTGTGATTTTTGATCCTCAACGTCGTTAAGGTATGACTCCTT
JMCP020A05+ AGGCACCAtgaTCAAGCCCTGTGATTTTTGATggaCAtgcTCGTTAAGGTATGACTggaT
JMSF051G17+ AGGCACCAACTTCAAGCCCTGTGATTTTTGATCCTCAACGTCGTTAAGGTATGACTCCTT
JMSF019I15+ AGGCACCAACTTCAAGCCCTGTGATTTTTGATCCTCAACGTCGTTAAGGTATGACTCCTT
JMSF026N09+ AGGCACCAACTTCAAGCCCTGTGATTTTTGATCCTCAACGTCGTTAAGGTATGACTCCTT
                      ____________________________________________________________
consensus AGGCACCAACTTCAAGCCCTGTGATTTTTGATCCTCAACGTCGTTAAGGTATGACTCCTT
 
. : . : . : . : . : . :
rJMSF001O12- AAACCCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
JMCP020A05+ AAACCCAAACAagaCATATTCACATGGTCCATTTTggCAAATCCAgTTGCAGTGTTCGGT
JMSF051G17+ AAACCCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
JMSF019I15+ AAACCCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
JMSF006L08+ CCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
JMSF026N09+ AAACCCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
                      ____________________________________________________________
consensus AAACCCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
 
. : . : . : . : . : . :
rJMSF001O12- TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
JMCP020A05+ TGcCTCtgaTGTAGTcaagTGTTGACAAGATGAAGA
JMSF051G17+ TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
JMSF019I15+ TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
JMSF001O12+ TCTTTCGTCAGAAA
JMSF013C10+ CTTTCGTCAGAAA
JMSF006L08+ TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
JMSF026N09+ TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
                      ____________________________________________________________
consensus TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
 
. : . : . : . : . : . :
rJMSF001O12- TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF051G17+ TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF019I15+ TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF001O12+ TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF013C10+ TCCTGCGGTGAGCGAGTGACTGNTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF006L08+ TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF026N09+ TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
                      ____________________________________________________________
consensus TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
 
. : . : . : . : . : . :
rJMSF001O12- AAGTGGCGGACTGGTCCGGCGAGT
JMSF051G17+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
JMSF019I15+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
JMSF001O12+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
JMSF013C10+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
JMSF006L08+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
JMSF026N09+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
                      ____________________________________________________________
consensus AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
 
. : . : . : . : . : . :
JMSF051G17+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTT
JMSF019I15+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
JMSF001O12+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
JMSF013C10+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
JMSF006L08+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
JMSF026N09+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
                      ____________________________________________________________
consensus GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
 
. : . : . : . : . : . :
JMSF019I15+ ACGAGGAGTTAGGGTATTATGGCTTTCACGACT
JMSF001O12+ ACGAGGAGTTAGGGTATTATGGCTTTCACGACTAGC
JMSF013C10+ ACGAGGAGTTAGGGTATTATGGCTTTCACGACTAGC
JMSF006L08+ ACGAGGAGTTAGGGTATTATGGCTTTCACGACTAGC
JMSF026N09+ ACGAGGAGTTAGGGTATTATGGCTTTCACGACTAGCAGTTCAGGGCTTCAGCGGACATCC
                      ____________________________________________________________
consensus ACGAGGAGTTAGGGTATTATGGCTTTCACGACTAGCAGTTCAGGGCTTCAGCGGACATCC