| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP020A05 | Sequence | 300 | 009365 (8) | ref|XP_006357654.1| | 2e-13 | PREDICTED: uncharacterized protein LOC102599960 isoform X2 [Solanum tuberosum] | |||||
| JMSF001O12 | Sequence | 236 | 009365 (8) | 712 | 009365 (8) | emb|CDP13853.1| | 8e-50 | unnamed protein product [Coffea canephora] | |||
| JMSF006L08 | Sequence | 344 | 009365 (8) | ||||||||
| JMSF013C10 | Sequence | 230 | 009365 (8) | 798 | 004219 (4) | ref|XP_006357653.1| | 2e-34 | PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum] | |||
| JMSF019I15 | Sequence | 548 | 009365 (8) | ref|XP_009801445.1| | 5e-14 | PREDICTED: ribosomal biogenesis protein LAS1L-like [Nicotiana sylvestris] | 787 | 004219 (4) | ref|XP_006357653.1| | 2e-34 | PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum] |
| JMSF026N09 | Sequence | 667 | 009365 (8) | ref|XP_006357653.1| | 5e-27 | PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum] | 680 | 004219 (4) | ref|XP_009626552.1| | 6e-41 | PREDICTED: pre-rRNA-processing protein las1 [Nicotiana tomentosiformis] |
| JMSF051G17 | Sequence | 595 | 009365 (8) | ref|XP_006357653.1| | 6e-27 | PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum] | 724 | 004219 (4) | ref|XP_006357653.1| | 1e-34 | PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF001O12- CTTTTGTCACATGCCAACATATTTAGTT
____________________________________________________________
consensus CTTTTGTCACATGCCAACATATTTAGTT
. : . : . : . : . : . :
rJMSF001O12- ATTTACAAAAAACTCAAGAATAATTGATCATAAACTTTGCAAAGGGTTTATGCAGAACTG
____________________________________________________________
consensus ATTTACAAAAAACTCAAGAATAATTGATCATAAACTTTGCAAAGGGTTTATGCAGAACTG
. : . : . : . : . : . :
rJMSF001O12- CACACCGTGGCGGACATCAATCAGCATACGGGGAATGCCAATTGCATAAGCTGCCTCAGC
____________________________________________________________
consensus CACACCGTGGCGGACATCAATCAGCATACGGGGAATGCCAATTGCATAAGCTGCCTCAGC
. : . : . : . : . : . :
rJMSF001O12- TATTGAAAGCTCGTTCTTCTTGCGGTTCTTCTCAATAACTCCATTTACTAACCTGGTAAT
JMSF051G17+ TGGTAAT
JMSF026N09+ TGGTAAT
____________________________________________________________
consensus TATTGAAAGCTCGTTCTTCTTGCGGTTCTTCTCAATAACTCCATTTACTAACCTGGTAAT
. : . : . : . : . : . :
rJMSF001O12- TGCCATAGAATATAGCATAGCCAGCATTTCTTCCGATAGCTGCACACTTTTGGGTACATC
JMSF051G17+ TGCCATAGAATATAGCATAGCCAGCATTTGTTCCGATAGCTGCACACTTTTGGGTACATC
JMSF026N09+ TGCCATAGAATATAGCATAGCCAGCATTTCTTCCGATAGCTGCACACTTTTGGGTACATC
____________________________________________________________
consensus TGCCATAGAATATAGCATAGCCAGCATTTCTTCCGATAGCTGCACACTTTTGGGTACATC
. : . : . : . : . : . :
rJMSF001O12- ATCTCTGAAATATGGATCTTTCTGCTGAATTTCGATGATTGAAGCGGTAACATCGACAGC
JMCP020A05+ GATTGAAGCGGTAAgtagcACAcg
JMSF051G17+ ATCTCTGAAATATGGATCTTTCTGCTGAATTTCGATGATTGAAGCGGTAACATCGACAGC
JMSF019I15+ TTTCGATGATTGAAGCGGTAACATCGACAGC
JMSF026N09+ ATCTCTGAAATATGGATCTTTCTGCTGAATTTCGATGATTGAAGCGGTAACATCGACAGC
____________________________________________________________
consensus ATCTCTGAAATATGGATCTTTCTGCTGAATTTCGATGATTGAAGCGGTAACATCGACAGC
. : . : . : . : . : . :
rJMSF001O12- GACTGGAATGCATCCTCTGTTCCTCCAAGTCGAAATCCTTCTAAGTGCGGAATCAACGGA
JMCP020A05+ ctgacGAATGCATggagacTTggaCCAtcagcAAATCgaagaAAGTcCAGAATCAACGGA
JMSF051G17+ GACTGGAATGCATCCTCTGTTCCTCCAAGTCGAAATCCTTCTAAGTGCAGAATCAACGGA
JMSF019I15+ GACTGGAATGCATCCTCTGTTCCTCCAAGTCGAAATCCTTCTAAGTGCAGAATCAACGGA
JMSF026N09+ GACTGGAATGCATCCTCTGTTCCTCCAAGTCGAAATCCTTCTAAGTGCAGAATCAACGGA
____________________________________________________________
consensus GACTGGAATGCATCCTCTGTTCCTCCAAGTCGAAATCCTTCTAAGTGCAGAATCAACGGA
. : . : . : . : . : . :
rJMSF001O12- AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
JMCP020A05+ AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
JMSF051G17+ AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
JMSF019I15+ AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
JMSF026N09+ AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
____________________________________________________________
consensus AAGCGGAGAAGAAGAGAAAAGGGAATCTCCAATGAAACTCCACTCTTCCCAGGTTAACCA
. : . : . : . : . : . :
rJMSF001O12- AGGCACCAACTTCAAGCCCTGTGATTTTTGATCCTCAACGTCGTTAAGGTATGACTCCTT
JMCP020A05+ AGGCACCAtgaTCAAGCCCTGTGATTTTTGATggaCAtgcTCGTTAAGGTATGACTggaT
JMSF051G17+ AGGCACCAACTTCAAGCCCTGTGATTTTTGATCCTCAACGTCGTTAAGGTATGACTCCTT
JMSF019I15+ AGGCACCAACTTCAAGCCCTGTGATTTTTGATCCTCAACGTCGTTAAGGTATGACTCCTT
JMSF026N09+ AGGCACCAACTTCAAGCCCTGTGATTTTTGATCCTCAACGTCGTTAAGGTATGACTCCTT
____________________________________________________________
consensus AGGCACCAACTTCAAGCCCTGTGATTTTTGATCCTCAACGTCGTTAAGGTATGACTCCTT
. : . : . : . : . : . :
rJMSF001O12- AAACCCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
JMCP020A05+ AAACCCAAACAagaCATATTCACATGGTCCATTTTggCAAATCCAgTTGCAGTGTTCGGT
JMSF051G17+ AAACCCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
JMSF019I15+ AAACCCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
JMSF006L08+ CCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
JMSF026N09+ AAACCCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
____________________________________________________________
consensus AAACCCAAACATCTCATATTCACATGGTCCATTTTCCCAAATCCACTTGCAGTGTTCGGT
. : . : . : . : . : . :
rJMSF001O12- TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
JMCP020A05+ TGcCTCtgaTGTAGTcaagTGTTGACAAGATGAAGA
JMSF051G17+ TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
JMSF019I15+ TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
JMSF001O12+ TCTTTCGTCAGAAA
JMSF013C10+ CTTTCGTCAGAAA
JMSF006L08+ TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
JMSF026N09+ TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
____________________________________________________________
consensus TGGCTCACTTGTAGTGTTCTGTTGACAAGATGAAGAACCATCCATCTCTTTCGTCAGAAA
. : . : . : . : . : . :
rJMSF001O12- TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF051G17+ TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF019I15+ TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF001O12+ TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF013C10+ TCCTGCGGTGAGCGAGTGACTGNTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF006L08+ TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
JMSF026N09+ TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
____________________________________________________________
consensus TCCTGCGGTGAGCGAGTGACTGGTCCGACAGTGAGCGAGTAATGGTCACGGCAGCAGGCG
. : . : . : . : . : . :
rJMSF001O12- AAGTGGCGGACTGGTCCGGCGAGT
JMSF051G17+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
JMSF019I15+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
JMSF001O12+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
JMSF013C10+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
JMSF006L08+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
JMSF026N09+ AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
____________________________________________________________
consensus AAGTGGCGGACTGGTCCGGCGAGTCGACGACGAGCTTAGTGCTGAGCTCTGTTGAGTCTG
. : . : . : . : . : . :
JMSF051G17+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTT
JMSF019I15+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
JMSF001O12+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
JMSF013C10+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
JMSF006L08+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
JMSF026N09+ GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
____________________________________________________________
consensus GTCAGTGGTCGGTGGTCCGGCCAGGGGGCGACCGGCGACTTCAGCTTGGAGCTTTGGGCG
. : . : . : . : . : . :
JMSF019I15+ ACGAGGAGTTAGGGTATTATGGCTTTCACGACT
JMSF001O12+ ACGAGGAGTTAGGGTATTATGGCTTTCACGACTAGC
JMSF013C10+ ACGAGGAGTTAGGGTATTATGGCTTTCACGACTAGC
JMSF006L08+ ACGAGGAGTTAGGGTATTATGGCTTTCACGACTAGC
JMSF026N09+ ACGAGGAGTTAGGGTATTATGGCTTTCACGACTAGCAGTTCAGGGCTTCAGCGGACATCC
____________________________________________________________
consensus ACGAGGAGTTAGGGTATTATGGCTTTCACGACTAGCAGTTCAGGGCTTCAGCGGACATCC