Contig 009359:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039G15Sequence599009359 (3)ref|XP_009758833.1|1e-56PREDICTED: F-box protein At4g00755-like isoform X3 [Nicotiana sylvestris]710005484 (3)ref|XP_009601681.1|2e-51PREDICTED: F-box protein At4g00755-like isoform X2 [Nicotiana tomentosiformis]
JMSF011C17Sequence300009359 (3)696005484 (3)ref|XP_009758501.1|2e-41PREDICTED: F-box protein At4g00755-like isoform X2 [Nicotiana sylvestris]
JMSF026I18Sequence672009359 (3)ref|XP_009758835.1|2e-55PREDICTED: F-box protein At4g00755-like isoform X5 [Nicotiana sylvestris]708005484 (3)ref|XP_009758501.1|4e-71PREDICTED: F-box protein At4g00755-like isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039G15+                                                                  TCCTT
JMSF026I18+                                                           TACGCTGTCCTT
                      ____________________________________________________________
consensus                                                             TACGCTGTCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039G15+           TACTGGACCAGTATGAAGCTCTATTCAGATATCTTTCCCTTGGATATAGAGTATTGGCAA
JMSF026I18+           TACTGGACCAGTATGAAGCTCTATTCAGATATCTTTCCCTNGGATATAGAGTATTGGCAA
                      ____________________________________________________________
consensus             TACTGGACCAGTATGAAGCTCTATTCAGATATCTTTCCCTTGGATATAGAGTATTGGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039G15+           TACTTTCAAGAGGATAATTGTCTGTACTCGAAGCCCCGATTGCATACTCAATACAATCAG
JMSF026I18+           TACTTTCAAGAGGATAATTGTCTGTACTCGAAGCCCCGATTGCATACTCAATACAATCAG
                      ____________________________________________________________
consensus             TACTTTCAAGAGGATAATTGTCTGTACTCGAAGCCCCGATTGCATACTCAATACAATCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039G15+           TTGGAGATAATGCTAGTGTCTCAAGAGCTTGAAGTAGAGAAGCATAAACCCTATGGTCTC
JMSF026I18+           TTGGAGATAATGCTAGTGTCTCAAGAGCTTGAAGTAGAGAAGCATAAACCCTATGGTCTC
                      ____________________________________________________________
consensus             TTGGAGATAATGCTAGTGTCTCAAGAGCTTGAAGTAGAGAAGCATAAACCCTATGGTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039G15+           TCCTTAGAGTCTCGAAGTCAGAATTGCTAGATCCAACGACAGATGATTCATTCGTTCTGC
JMSF026I18+           TCCTTAGAGTCTCAAAGTCAGAATTGCTAGATCCAACAACAGATGATTCATTTGTTCTGC
                      ____________________________________________________________
consensus             TCCTTAGAGTCTCGAAGTCAGAATTGCTAGATCCAACGACAGATGATTCATTTGTTCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039G15+           AACCTTGTTCGACTACGCGTGCAACACTGGAAAGCTGGGGAAACTTTCTTAAGCACAATT
JMSF026I18+           AACCTTCTTCGACTATGCATGCAACACCGGAAAGCTGGGGAAACTTTCTTAAGCACAATT
                      ____________________________________________________________
consensus             AACCTTGTTCGACTATGCGTGCAACACTGGAAAGCTGGGGAAACTTTCTTAAGCACAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039G15+           GCTTGGAAATTCCATTTTCGATCATACAAGTACGCCAGATGCGTGACACGGCTCCAGCAT
JMSF026I18+           GCTTGGAAATTCCATTTTCGATCATACAATGACGCCAGACGCGTGACACAGCTCCAGCAT
                      ____________________________________________________________
consensus             GCTTGGAAATTCCATTTTCGATCATACAATTACGCCAGATGCGTGACACGGCTCCAGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039G15+           GCACCACATCAGCTGGATCACATAAACTCAGCATGATCTCCACGATCACATCCTTTTCAA
JMSF026I18+           GCACCACATCAGCTGGATCACATAAACTCAGCATGATCTCCACGATCACATCCTTTTCAA
                      ____________________________________________________________
consensus             GCACCACATCAGCTGGATCACATAAACTCAGCATGATCTCCACGATCACATCCTTTTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039G15+           CGCATTGCAGAAAGTCAATTCTAGGCTCCATTACCGCTGACGAACAACCCATCAAACCTT
JMSF011C17+                                                                     TT
JMSF026I18+           CCCATTGCAGAAAGTCAATTCTAGGCTCCATTACCTCTGACAAACAGCCCATCAACCTTT
                      ____________________________________________________________
consensus             CGCATTGCAGAAAGTCAATTCTAGGCTCCATTACCTCTGACGAACAGCCCATCAACCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039G15+           TTTGTGTTTCTTCCGTTAAATTGGAAGCAGAAAGATAATCAAAACTCTCAAGAGAAACAG
JMSF011C17+           TTTGTGTTTCTTCCGTTAAATTGGAAGCAGAAAGATAATCAAAACTCTGAAGAGAAACAG
JMSF026I18+           TTTGTGTTTCTTCCGTTAAATTGGAAGCAGAAAGATAATCAAAACTCTGAAGAGAAACAG
                      ____________________________________________________________
consensus             TTTGTGTTTCTTCCGTTAAATTGGAAGCAGAAAGATAATCAAAACTCTGAAGAGAAACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF039G15+           AAATGAG                                                     
JMSF011C17+           AGATGAG                                                     
JMSF026I18+           AGATGAGTGTTCTAGAGAACGCGAAGTGGGTGTGTCTGGGTTCTACTTATCAATGCCCGA
                      ____________________________________________________________
consensus             AGATGAGTGTTCTAGAGAACGCGAAGTGGGTGTGTCTGGGTTCTACTTATCAATGCCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026I18+           TTGGCCTCTCGGGCTCTGCCTCTGTCTGGTTCTCTAGGATTTTTTTCTTTTTCTTTTTTC
                      ____________________________________________________________
consensus             TTGGCCTCTCGGGCTCTGCCTCTGTCTGGTTCTCTAGGATTTTTTTCTTTTTCTTTTTTC