Contig 009355:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011M24Sequence555009355 (5)ref|XP_009602932.1|2e-99PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 15 [Nicot
JMFN036G09Sequence613009355 (5)ref|XP_009602932.1|2e-101PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 15 [Nicot
JMFS111F06Sequence514009355 (5)ref|XP_009762866.1|1e-61PREDICTED: brassinosteroid-regulated protein BRU1-like isoform X1 [Nicotiana sy
JMSF026A17Sequence641009355 (5)ref|XP_009762866.1|2e-97PREDICTED: brassinosteroid-regulated protein BRU1-like isoform X1 [Nicotiana sy661009355 (5)ref|XP_009602932.1|1e-105PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 15 [Nicot

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS111F06+               GAACTAAGAATAAAAGAATTTCATTAATTTTATAATTTAGTACATAATACTCTCTA
rJMSF026A17-                                                      TACATAATACTCTCTA
                      ____________________________________________________________
consensus                 GAACTAAGAATAAAAGAATTTCATTAATTTTATAATTTAGTACATAATACTCTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS111F06+           CGTGGATCTATCACAAATTAAAGAATTACAATCCCAATAAAAGATTAGAATCTTGAGTTC
rJMSF026A17-          CGTGGATCTATCACAAATTAAAGAATTACAATCCCAATAAAAGATTAGAATCTTGAGTTC
                      ____________________________________________________________
consensus             CGTGGATCTATCACAAATTAAAGAATTACAATCCCAATAAAAGATTAGAATCTTGAGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS111F06+           TTGCACTCTGCAGGAAAAGTGCCTCCAGGAAACCTCTTGGAATCAGCACAGTAATTGTAA
rJMSF026A17-          TTGCACTCTGCAGGAAAAGTGCCTCCAGGAAACCTCTTGGAATCAGCACAGTAATTGTAA
JMFN011M24+                                                            AGTAATTGTAA
                      ____________________________________________________________
consensus             TTGCACTCTGCAGGAAAAGTGCCTCCAGGAAACCTCTTGGAATCAGCACAGTAATTGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS111F06+           ACCATATGTTTGCTTTGCACCCATCTCAACCTATTCCTCCCACTCGCATCAATATCCTGC
rJMSF026A17-          ACCATATGTTTGCTTTGCACCCATCTCAACCTATTCCTCCCACTCGCATCAATATCCTGC
JMFN011M24+           ACCATATATTTGCTCTGCACCCATCTCAACCTATTCCTCCCACTCGCATCAATATCCTGC
                      ____________________________________________________________
consensus             ACCATATGTTTGCTTTGCACCCATCTCAACCTATTCCTCCCACTCGCATCAATATCCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS111F06+           GTCTGCCATGTCTGTTTGTTGTTCACCGGATCGGCGGAGGACTTGGAATCACAAGACGAG
rJMSF026A17-          GTCTGCCATGTCTGTTTGTTGTTCACCGGATCGGCGGAGGACTTGGAATCACAAGACGAG
JMFN011M24+           GTCTGCCATGCCTGATTGTTGTTGGCCGGATCAGCGGAGGACGTGGAATCGCAAGACGAG
                      ____________________________________________________________
consensus             GTCTGCCATGTCTGTTTGTTGTTCACCGGATCGGCGGAGGACTTGGAATCACAAGACGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS111F06+           CGGCCGCCGGAGACGACACAGGCATCAATATTGAAGTTCCGGTAGTAAACCGTGAAGGGT
rJMSF026A17-          CGGCCGCCGGAGACGACACAGGCATCAATATTGAAGTTCCGGTAGTAAACCGTGAAGGGT
JMFN011M24+           CGGCCGCCGGAGACGACGCAGGCATCAATATTGAAGTTCTGGTAGTAAACTGTGAAAGGT
JMFN036G09+                 CCGGAGACGACACAGGCATCAATATTGAAGTTCCGGTAGTAAACCGTGAAGGGT
                      ____________________________________________________________
consensus             CGGCCGCCGGAGACGACACAGGCATCAATATTGAAGTTCCGGTAGTAAACCGTGAAGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS111F06+           GCCTTAGTCCAATCAGTCTTGACAAGGCCCCCCTGCGTAGCCCAGTCGTCTGCGTTCCAT
rJMSF026A17-          GCCTTAGTCCAATCAGTCTTGACAAGGCCCCCCTGCGTAGCCCAGTCGTCTGCGTTCCAT
JMFN011M24+           GCCTTAGTCCAATCAGTCTTGACACGGCCCCCCTGCGTAGCCCAGTCGTCTGCGTTCCAT
JMFN036G09+           GCCTTAGTCCAATCAGTCTTGACAAGGCCCCCCTGCGTAGCCCAGTCGTCTGCGTTCCAT
JMSF026A17+                              TGACAAGGCCCCCCTGCGTAGCCCAGTCGTCTGCGTTCCAT
                      ____________________________________________________________
consensus             GCCTTAGTCCAATCAGTCTTGACAAGGCCCCCCTGCGTAGCCCAGTCGTCTGCGTTCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS111F06+           AAACTGCAGTAGACTCTCATGGGCTGATTCTTGGGGAAAGGGACCCCCATGGTCTCGTGG
rJMSF026A17-          AAACTGCAGTAGACTCTCATGGGCTGATTCTTGGGGAAAGGGACCCCCATGGTCTCGTGG
JMFN011M24+           AAGCTGCAGTAGACCCTCATGGGCTGATCCTTGGGGAACGGGACCCCGATACTCTCATGG
JMFN036G09+           AAACTGCAGTAGACTCTCATGGGCTGATTCTTGGGGAAAGGGACCCCCATGGTCTCGTGG
JMSF026A17+           AAACTGCAGTAGACTCTCATGGGCTGATTCTTGGGGAAAGGGACCCCCATGGTCTCGTGG
                      ____________________________________________________________
consensus             AAACTGCAGTAGACTCTCATGGGCTGATTCTTGGGGAAAGGGACCCCCATGGTCTCGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS111F06+           TTGCGGTAAACTCTGATGGGAATGTTGTCGACGAGAAA                      
rJMSF026A17-          TTGCGGTAAACTCTGATGGGAATGTTGTCGACGAGAAAGATGATGCGCTGAGAGTTCCAA
JMFN011M24+           TTGCGGTAAACTCTGATGGGAATGTTGTCGACGAGGAAGATGATGCGCTGAGAGTTCCAA
JMFN036G09+           TTGCGGTAAACTCTGATGGGAATGTTGTCGACGAGAAAGATGATGCGCTGAGAGTTCCAA
JMSF026A17+           TTGCGGTAAACTCTGATGGGAATGTTGTCGACGAGAAAGATGATGCGCTGAGAGTTCCAA
                      ____________________________________________________________
consensus             TTGCGGTAAACTCTGATGGGAATGTTGTCGACGAGAAAGATGATGCGCTGAGAGTTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026A17-          AGAATGGAGTAAGTGTGGAAGGCGGTGGTGGGGTCGAACCAGAGATGGAATTGCTGCTCC
JMFN011M24+           AGAATGGAGTAAGTGTGGAAGGCGGCGGTGGGGTCGAACCAGAGATGGAATTGCTGCTCC
JMFN036G09+           AGAATGGAGTAAGTGTGGAAGGCGGTGGTGGGGTCGAACCAGAGATGGAATTGCTGCTCC
JMSF026A17+           AGAATGGAGTAAGTGTGGAAGGCGGTGGTGGGGTCGAACCAGAGATGGAATTGCTGCTCC
                      ____________________________________________________________
consensus             AGAATGGAGTAAGTGTGGAAGGCGGTGGTGGGGTCGAACCAGAGATGGAATTGCTGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026A17-          CTGCCTCCTTTCCCTTGAGAGTATACATTGGTATGAATGGTGTAAGGCTGGCCGGAGACA
JMFN011M24+           CTGCCGCCTTTCCCTTGAGAGTATACATTGGTGTGGATGGTGTAAGGCTGGCCGGAGACG
JMFN036G09+           CTGCCTCCTTTCCCTTGAGAGTATACATTGGTATGAATGGTGTAAGGCTGGCCGGAGACA
JMSF026A17+           CTGCCTCCTTTCCCTTGAGAGTATACATTGGTATGAATGGTGTAAGGCTGGCCGGAGACA
                      ____________________________________________________________
consensus             CTGCCTCCTTTCCCTTGAGAGTATACATTGGTATGAATGGTGTAAGGCTGGCCGGAGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026A17-          TTGCCCAGGAATTCAAAATCAATTTCGTCATGTCTGTCTCCTAGA               
JMFN011M24+           TTGCCGAGGAATTCGAAATCAATTTCGTCATGCCTGTCTCCTAGAGAAGATAA       
JMFN036G09+           TTGCCCAGGAATTCAAAATCAATTTCGTCATGTCTGTCTCCTAGAGAAGATAA       
JMSF026A17+           TTGCCCAGGAATTCAAAATCAATTTCGTCATGTCTGTCTCCTAGAGAAGATAAGTAGAAA
                      ____________________________________________________________
consensus             TTGCCCAGGAATTCAAAATCAATTTCGTCATGTCTGTCTCCTAGAGAAGATAAGTAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026A17+           GTGGTGACGGTTCCAGCAGAGTTGTCTGGGATAAGCTTGACCTGCATATCAAATCTGCCG
                      ____________________________________________________________
consensus             GTGGTGACGGTTCCAGCAGAGTTGTCTGGGATAAGCTTGACCTGCATATCAAATCTGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026A17+           AAAAGGTATTCATTGGTGGATTGGAAGCCGGAACCCGATTCTCTGTCGAGAGTAAGAGCT
                      ____________________________________________________________
consensus             AAAAGGTATTCATTGGTGGATTGGAAGCCGGAACCCGATTCTCTGTCGAGAGTAAGAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026A17+           GCCATGTTGCCGCCCTGCATCACTTTACCCCGTCCATTGCCAAAATACATCTGAACATCT
                      ____________________________________________________________
consensus             GCCATGTTGCCGCCCTGCATCACTTTACCCCGTCCATTGCCAAAATACATCTGAACATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026A17+           TGGTTGAAATTTGCAGCCATGGCTGCTGCCACCAGACAAGCCGCCACAAGAAGCTGCAGC
                      ____________________________________________________________
consensus             TGGTTGAAATTTGCAGCCATGGCTGCTGCCACCAGACAAGCCGCCACAAGAAGCTGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF026A17+           AATAAGGAAACTTGAGAAGCCATTTGATATATTTCTGAAGAACAGAGATGGTGTGAGCCC
                      ____________________________________________________________
consensus             AATAAGGAAACTTGAGAAGCCATTTGATATATTTCTGAAGAACAGAGATGGTGTGAGCCC