Contig 009342:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF025C20+                                                                  GATC
JMSF025C20-                                                                   GATC
                      ____________________________________________________________
consensus                                                                     GATC
 
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rJMSF025C20+          CATAATCTCATTTTTCCACAAAGAATCAACCTGAAATCATTCATGGCTTCTGCGTCAATT
JMSF025C20-           CATAATCTCATTTTTCCACAAAGAATCAACCTGAAATCATTCATGGCTTCTGCGTCAATT
                      ____________________________________________________________
consensus             CATAATCTCATTTTTCCACAAAGAATCAACCTGAAATCATTCATGGCTTCTGCGTCAATT
 
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rJMSF027C20+             TTCTGTTCCCAATTTTCCGGCACCGGAGTTTCCTCGGCNCGATCGCGGCGGAGCGGT
rJMSF025C20+          CCTTTCTGTTCCCAATTTTCCGGCACCGGAGTTTCCTCGGCGCGATCGCGGCGGAGCGGT
JMSF025C20-           CCTTTCTGTTCCCAATTTTCCGGCACCGGAGTTTCCTCGGCGCGATCGCGGCGGAGCGGT
                      ____________________________________________________________
consensus             CCTTTCTGTTCCCAATTTTCCGGCACCGGAGTTTCCTCGGCGCGATCGCGGCGGAGCGGT
 
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rJMSF027C20+          GNNNCGTTCCGTCAGCCGATTTNCACNGTCTCCGCCTCCNGTGCTACGGCGGAGCGGACC
rJMSF025C20+          GTGGCGTTCCGTCAGCCGATTTCCACCGTCTCCGCCTCCTGTGCTACGGCGGAGCGGACC
JMSF025C20-           GTGGCGTTCCGTCAGCCGATTTCCACCGTCTCCGCCTCCTGTGCTACGGCGGAGCGGACC
                      ____________________________________________________________
consensus             GTGGCGTTCCGTCAGCCGATTTCCACCGTCTCCGCCTCCTGTGCTACGGCGGAGCGGACC
 
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rJMSF027C20+          AGCAGCGGNGCCGCCACGCACGCCTCGCTGTACGAAGTTCTCGGGATTCAGACGGGCGCC
rJMSF025C20+          AGCAGCGGCGCCGCCACGCACGCCTCGCTCTACGAAGTTCTCGGGATTCAGACGGGCGCC
JMSF025C20-           AGCAGCGGCGCCGCCACGCACGCCTCGCTCTACGAAGTTCTCGGGATTCAGACGGGCGCC
                      ____________________________________________________________
consensus             AGCAGCGGCGCCGCCACGCACGCCTCGCTCTACGAAGTTCTCGGGATTCAGACGGGCGCC
 
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rJMSF027C20+          ACGTGTCAGGAAATCAAGGCTGCATACAGGAGGCTGGCTAGGGTTTTGCATCCGGACGTC
rJMSF025C20+          ACGTGTCAGGAAATCAAGGCTGCATACAGGAGGCTGGCTAGGGTTTTGCATCCGGACGTC
JMSF025C20-           ACGTGTCAGGAAATCAAGGCTGCATACAGGAGGCTGGCTAGGGTTTTGCATCCGGACGTC
                      ____________________________________________________________
consensus             ACGTGTCAGGAAATCAAGGCTGCATACAGGAGGCTGGCTAGGGTTTTGCATCCGGACGTC
 
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rJMSF027C20+          GCGTCTAGCCNTCGCCGGGAATCGTCGGACGAAGACTTCATCAGAGTNCACGCGGNGTAN
rJMSF025C20+          GCGTCTAGCTTTCGCCGGGAATCGTCGGACGAAGACTTCATCAGAGTGCACGCGGCGTAC
JMSF025C20-           GCGTCTAGCTTTCGCCGGGAATCGTCGGACGAAGACTTCATCAGAGTGCACGCGGCGTAC
                      ____________________________________________________________
consensus             GCGTCTAGCTTTCGCCGGGAATCGTCGGACGAAGACTTCATCAGAGTGCACGCGGCGTAC
 
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rJMSF027C20+          GTCACTCTCTNCGATCCACAAAAGCGTGAGAATTACGACCGGNCTCTGNTCCGNCCGGGG
rJMSF025C20+          GTCACTCTCTCCGATCCACAAAAGCGTGCGAATTACGACCGGACTCTGTTCCGGCCGGGG
JMSF025C20-           GTCACTCTCTCCGATCCACAAAAGCGTGCGAATTACGACCGGACTCTGTTCCGGCCGGGG
                      ____________________________________________________________
consensus             GTCACTCTCTCCGATCCACAAAAGCGTGCGAATTACGACCGGACTCTGTTCCGGCCGGGG
 
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rJMSF027C20+          CAGANCAGGCC                                                 
rJMSF025C20+          CAGAGCAGGCCGCCGGTTGTGTTTTCTGGTGTTAACAGTCGCCGGAATTGGGAAACTGAT
JMSF025C20-           CAGAGCAGGCCGCCGGTTGTGTTTTCTGGTGTTAACAGTCGCCGGAATTGGGAAACTGAT
                      ____________________________________________________________
consensus             CAGAGCAGGCCGCCGGTTGTGTTTTCTGGTGTTAACAGTCGCCGGAATTGGGAAACTGAT
 
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rJMSF025C20+          CAATGCTGGTAGCTGAAGGGAGTGATAATCACATATTAGGCTTAATTCTTTGATTTTATG
JMSF025C20-           CAATGCTGGTAGCTGAAGGGAGTGATAATCACATATTAGGCTTAATTCTTTGATTTTATG
                      ____________________________________________________________
consensus             CAATGCTGGTAGCTGAAGGGAGTGATAATCACATATTAGGCTTAATTCTTTGATTTTATG
 
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rJMSF025C20+          AGCAGGTTACCTTTAATCTCGCTATAACTTCATTGACGACAAGTTTGAAACTCAAAATT 
JMSF025C20-           AGCAGGTTACCTTTAATCTCGCTATAACTTCATTGACGACAAGTTTGAAACTCAAAATTT
                      ____________________________________________________________
consensus             AGCAGGTTACCTTTAATCTCGCTATAACTTCATTGACGACAAGTTTGAAACTCAAAATTT
 
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JMSF025C20-           TGCTGTAAATCCTAAGTTTTCATGAGTTTAAGTCTGAATATTCATTAATGTGCAAAAAAA
                      ____________________________________________________________
consensus             TGCTGTAAATCCTAAGTTTTCATGAGTTTAAGTCTGAATATTCATTAATGTGCAAAAAAA