clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF051P04 | Sequence | 505 | 009340 (3) | ref|XP_009371612.1| | 2e-17 | PREDICTED: U-box domain-containing protein 5-like [Pyrus x bretschneideri] ref|X | 637 | 024438 | |||
JMSF025A21 | Sequence | 535 | 009340 (3) | ref|XP_008241693.1| | 3e-07 | PREDICTED: U-box domain-containing protein 5-like isoform X2 [Prunus mume] | 728 | 002938 (2) | ref|XP_008338347.1| | 2e-46 | PREDICTED: U-box domain-containing protein 5-like [Malus domestica] ref|XP_00833 |
JMSF037P05 | Sequence | 650 | 009340 (3) | emb|CDP02009.1| | 3e-40 | unnamed protein product [Coffea canephora] | 666 | 002938 (2) | ref|XP_010095253.1| | 4e-42 | U-box domain-containing protein 5 [Morus notabilis] gb|EXB59099.1| U-box domain- |
This contig is upended
. : . : . : . : . : . :
JMSF037P05+ CTCTGCAGCCAGCAATACGG
____________________________________________________________
consensus CTCTGCAGCCAGCAATACGG
. : . : . : . : . : . :
JMSF037P05+ GAACCATGTTTTGAATCTGGCTCAAGCTAACCTCCAGTAAGCTCCACGACTTTTGACACC
____________________________________________________________
consensus GAACCATGTTTTGAATCTGGCTCAAGCTAACCTCCAGTAAGCTCCACGACTTTTGACACC
. : . : . : . : . : . :
JMFF051P04+ TTTCAGAGCCAAGTAGAGTTTACTTGATTCACTGCACGGCT
JMSF037P05+ TCGAGAGTATAACATCTCCTTTCAGAGCCAAGTAGAGTTTACTTGATTCACTGCACTGCT
____________________________________________________________
consensus TCGAGAGTATAACATCTCCTTTCAGAGCCAAGTAGAGTTTACTTGATTCACTGCACTGCT
. : . : . : . : . : . :
JMFF051P04+ TAAGTATTAACTTCGCCTTCTCAATGGCTTTGTTCAATAAGCAAAGCGCCTCTATCCCTG
JMSF037P05+ TAAGTATTAACTTCGCCTTCTCAATGGCTTTGTTCAATAAGCAAAGCGCCTCTATCCCTG
____________________________________________________________
consensus TAAGTATTAACTTCGCCTTCTCAATGGCTTTGTTCAATAAGCAAAGCGCCTCTATCCCTG
. : . : . : . : . : . :
JMFF051P04+ ATCTGCATCGAGGCCGGGATGCTTCTATTCGCTGGAAGTATTTTTGAAGCTCTACTTACT
JMSF037P05+ ATCTGCATCGAGGCCGGGATGCTTCTA-TCGCTGGAAGTATTTTTGAAGCTCTACTTACT
JMSF025A21+ GCATCGAGGCCGGGATGCTTCTA-TCGCTGGAAGTATTTTTGAAGCTCTACTTACT
____________________________________________________________
consensus ATCTGCATCGAGGCCGGGATGCTTCTA-TCGCTGGAAGTATTTTTGAAGCTCTACTTACT
. : . : . : . : . : . :
JMFF051P04+ GAGTTGATTAATTCTGTGCACATTAACCGATGCACCTTAATGGAGTTAGGAGTTGGAAGT
JMSF037P05+ GAGTTGATTAATTCTGTGCACATTAACCGATGCACCTTAATGGAGTTAGGAGTTGGAAGT
JMSF025A21+ GAGTTGATTAATTCTGTGCACATTAACTGATGCACCTTAATGGAGTTAGGAGTTGGAAGT
____________________________________________________________
consensus GAGTTGATTAATTCTGTGCACATTAACCGATGCACCTTAATGGAGTTAGGAGTTGGAAGT
. : . : . : . : . : . :
JMFF051P04+ GCTTCAGTAACAACTGTCTTCATACTCAAAGGAAATGGAAACGGAAGAACAGATAACTTA
JMSF037P05+ GCTTCAGTAACAACTGTCTTCATACTCAAAGGAAATGGAAACAGAAGAACAGATAACTTA
JMSF025A21+ GCTTCAGTAACAACTGTCTTCATACTCAAAGGAAATGGAAACAGAAGAACAGATAACTTA
____________________________________________________________
consensus GCTTCAGTAACAACTGTCTTCATACTCAAAGGAAATGGAAACAGAAGAACAGATAACTTA
. : . : . : . : . : . :
JMFF051P04+ TCT
JMSF037P05+ TCTAGCAAAAAGGTAGAGTTATCAAGACCACCAAATAACTACACTTCTGGAAACAGAAAC
JMSF025A21+ TCTAGCAAAAAGGTAGAGTTATCAAGACCACCAAATAACTACACTTCTGGAAACAGAAAC
____________________________________________________________
consensus TCTAGCAAAAAGGTAGAGTTATCAAGACCACCAAATAACTACACTTCTGGAAACAGAAAC
. : . : . : . : . : . :
JMSF037P05+ CCAAACCCAATGGCCAATTCCCTTCTGGAACCACACCCACCTTGAAAAGCTGCAAGCTTT
JMSF025A21+ CCAAACCCAATGGCCAATTCCCTTCTGGAACCACACCCACCTTGAAAAGCTGCAAGCTTT
____________________________________________________________
consensus CCAAACCCAATGGCCAATTCCCTTCTGGAACCACACCCACCTTGAAAAGCTGCAAGCTTT
. : . : . : . : . : . :
JMSF037P05+ CCAGCAAACTTGAATAGAATATTACAAATGACAACTTTCAAGAAAAGCTCCTCCTTCTTC
JMSF025A21+ CCAGCAAACTTGAATAGAATATTACAAATGACAACTTTCAAGAAAAGCTCCTCCTTCTTC
____________________________________________________________
consensus CCAGCAAACTTGAATAGAATATTACAAATGACAACTTTCAAGAAAAGCTCCTCCTTCTTC
. : . : . : . : . : . :
JMSF037P05+ TTCTTCTTCTTCTTTTCTTTTCCGAACAAAGGAACCCGATTCTGAACTGAGATTACAATT
JMSF025A21+ TTCTTCTTCTTCTTTTCTTTTCCGAACAAAGGAACCCGATTCTGAACTGAGATTACAATT
____________________________________________________________
consensus TTCTTCTTCTTCTTTTCTTTTCCGAACAAAGGAACCCGATTCTGAACTGAGATTACAATT
. : . : . : . : . : . :
JMSF037P05+ TCAAACACAAATCAACCTTATTGAGACCA
JMSF025A21+ TCAAACACAAATCAACCTTATTGAGACCACAGAAGACCAAGGAATGATGGATGCACGCAC
____________________________________________________________
consensus TCAAACACAAATCAACCTTATTGAGACCACAGAAGACCAAGGAATGATGGATGCACGCAC
. : . : . : . : . : . :
JMSF025A21+ AAATGTACAAGCATTTACAAACAGCATTAAAGAGATACCTAACCACCCAGTCACATCTTC
____________________________________________________________
consensus AAATGTACAAGCATTTACAAACAGCATTAAAGAGATACCTAACCACCCAGTCACATCTTC