Contig 009336:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018O23Sequence270009336 (4)731010026 (9)ref|XP_011028897.1|319PREDICTED: protein TIC 20-I, chloroplastic-like [Populus euphratica] ref|XP_0110
JMSF024N07Sequence661009336 (4)759010026 (9)ref|XP_009587603.1|329PREDICTED: protein TIC 20-I, chloroplastic-like [Nicotiana tomentosiformis]
JMSF034H23Sequence661009336 (4)642010026 (9)gb|EPS67780.1|3e-81tic20-like protein, partial [Genlisea aurea]
JMSF050G08Sequence655009336 (4)701010026 (9)emb|CDP18414.1|2e-99unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF024N07+                                                                      T
                      ____________________________________________________________
consensus                                                                        T
 
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JMSF034H23+            TCTATTATCATGCACAATATTTGTTTGGACAATGCAACGAATTAAACAAGACACAATTA
JMSF050G08+            TCTATTATCATGCACAATATTTGTTTGGACAATGCAACGAATTAAACAAGACACAATTA
JMSF024N07+           CTCTATTATCATGCACAATATTTGTTTGGACAATGCAACGAATTAAACAAGACACAATTA
                      ____________________________________________________________
consensus             CTCTATTATCATGCACAATATTTGTTTGGACAATGCAACGAATTAAACAAGACACAATTA
 
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JMSF034H23+           CTGCCTATTAATGTTGTTTGAACATTGTAGTTTGACTCTTATGAGAAGCTCCAATAATAC
JMSF050G08+           CTGCCTATTAATGTTGTTTGAACATTGTAGTTTGACTCTTATGAGAAGCTCCAATAATAC
JMSF024N07+           CTGCCTATTAATGTTGTTTGAACATTGTAGTTTGACTCTTATGAGAAGCTCCAATAATAC
                      ____________________________________________________________
consensus             CTGCCTATTAATGTTGTTTGAACATTGTAGTTTGACTCTTATGAGAAGCTCCAATAATAC
 
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JMSF034H23+           CTTCCAGGAAACTAACAAAGAAAAACGTAAAGTATAAACAAGCCACCAAAGGGGAAATAG
JMSF050G08+           CTTCCAGGAAACTAACAAAGAAAAACGTAAAGTATAAACAAGCCACCAAAGGGGAAATAG
JMSF024N07+           CTTCCAGGAAACTAACAAAGAAAAACGTAAAGTATAAACAAGCCACCAAAGGGGAAATAG
                      ____________________________________________________________
consensus             CTTCCAGGAAACTAACAAAGAAAAACGTAAAGTATAAACAAGCCACCAAAGGGGAAATAG
 
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JMSF034H23+           TACGAAAAAGAAAATATCAGCTTATGATAAATGTACTATGAACAGCTGAATGAGTAATCA
JMSF050G08+           TACGAAAAAGAAAATATCAGCTTATGATAAATGTACTATGAACAGCTGAATGAGTAATCA
JMSF024N07+           TACGAAAAAGAAAATATCAGCTTATGATAAATGTACTATGAACAGCTGAATGAGTAATCA
                      ____________________________________________________________
consensus             TACGAAAAAGAAAATATCAGCTTATGATAAATGTACTATGAACAGCTGAATGAGTAATCA
 
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JMSF034H23+           AAGAAAGAACCTTATGCTGCAAGTGTAAAACAAAAGGACTAATTCCCAAGTAAATATTTT
JMSF050G08+           AAGAAAGAACCTTATGCTGCAAGTGTAAAACAAAAGGACTAATTCCCAAGTAAATATTTT
JMSF024N07+           AAGAAAGAACCTTATGCTGCAAGTGTAAAACAAAAGGACTAATTCCCAAGTAAATATTTT
                      ____________________________________________________________
consensus             AAGAAAGAACCTTATGCTGCAAGTGTAAAACAAAAGGACTAATTCCCAAGTAAATATTTT
 
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JMSF034H23+           ACTACACAAAAAAGCAGACTAAACATTTGGTGCGGGAAAAATGTCGGATTCTGAATAAAT
JMSF050G08+           ACTACACAAAAAAGCAGACCAAACATTTGGTGCGGGAAAAATGTCGGATTCTGAATAAAT
JMSF024N07+           ACTACACAAAAAAGCAGACTAAACATTTGGTGCGGGAAAAATGTCGGATTCTGAATAAAT
                      ____________________________________________________________
consensus             ACTACACAAAAAAGCAGACTAAACATTTGGTGCGGGAAAAATGTCGGATTCTGAATAAAT
 
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JMSF034H23+           ACAAACCTTTGGAGAAGCAAGAAGTAAGATTGTGATGAGGTGCATATGAGTTCCTAATTG
JMSF018O23+                                  GTAAGATTGTGATGAGGTGCATATGAGTTCCTAATTG
JMSF050G08+           ACAAACCTTTGGAGAAGCAAGAAGTAAGATTGTGATGAGGTGCATATGAGTTCCTAATTG
JMSF024N07+           ACAAACCTTTGGAGAAGCAAGAAGTAAGATTGTGATGAGGTGCATATGAGTTCCTAATTG
                      ____________________________________________________________
consensus             ACAAACCTTTGGAGAAGCAAGAAGTAAGATTGTGATGAGGTGCATATGAGTTCCTAATTG
 
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JMSF034H23+           ATGAGAAGGCTGCCCTGAAAGGCAGTAGAGAAAGCCGCGCAGATGTTGAATTGCAGGACT
JMSF018O23+           ATGAGAAGGCTGCCCTGAAAGGCAGTAGAGAAAGCCGCGCAGATGTTGAATTGCAGGACT
JMSF050G08+           ATGAGAAGGCTGCCCTGAAAGGCAGTAGAGAAAGCCGCGCAGATGTTGAATTGCAGGACT
JMSF024N07+           ATGAGAAGGCTGCCCTGAAAGGCAGTAGAGAAAGCCGCGCAGATGTTGAATTGCAGGACT
                      ____________________________________________________________
consensus             ATGAGAAGGCTGCCCTGAAAGGCAGTAGAGAAAGCCGCGCAGATGTTGAATTGCAGGACT
 
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JMSF034H23+           TGGAATTAGCCTCAAAGGGTGTATAAACACCCCCAGAAGTCAGAAAGCATCCATTGGCAC
JMSF018O23+           TGGAATTAGCCTCAAAGGGTGTATAAACACCCCCAGAAGTCAGAAAGCATCCATTGGCAC
JMSF050G08+           TGGAATTAGCCTCAAAGGGTGTATAAACACCCCCAGAAGTCAGAAAGCATCCATTGGCAC
JMSF024N07+           TGGAATTAGCCTCAAAGGGTGTATAAACACCCCCAGAAGTCAGAAAGCATCCATTGGCAC
                      ____________________________________________________________
consensus             TGGAATTAGCCTCAAAGGGTGTATAAACACCCCCAGAAGTCAGAAAGCATCCATTGGCAC
 
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JMSF034H23+           TCATATTCAAGCCCTTGGATGAAGATCTAGTATTTGTTGAAAGACATAGATACCAAAATG
JMSF018O23+           TCATATTCAAGCCCTTGGATGAAGATCTAGTATTTGTTGAAAGACATAGATACCAAAATG
JMSF050G08+           TCATATTCAAGCCCTTGGATGAAGATCTAGTATTTGTTGAAAGACATAGATACCAAAATG
JMSF024N07+           TCATATTCAAGCCCTTGGATGAAGATCTAGTATTTGTTGAAAGACATAGATACCAAAATG
                      ____________________________________________________________
consensus             TCATATTCAAGCCCTTGGATGAAGATCTAGTATTTGTTGAAAGACATAGATACCAAAATG
 
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JMSF034H23+           CAGAGCGAGCGAGCGCGCGAGAGAGAGAGGCTTCGTTATCCTGCCTGCGGCTAGTAAG  
JMSF018O23+           CAGAGCGAGCGAGCGCGCGAGAGAGAGAGGCTTCGTTATCCTGCCTGCGGCT        
JMSF050G08+           CAGAGCGAGCGAGCGCGCGAGAGAGAGAGGCTTCGTTATCCTGCCTGCGGCTAGT     
JMSF024N07+           CAGAGCGAGCGAGCGCGCGAGAGAGAGAGGCTTCGTTATCCTGCCTGCGGCTAGTAAGCC
                      ____________________________________________________________
consensus             CAGAGCGAGCGAGCGCGCGAGAGAGAGAGGCTTCGTTATCCTGCCTGCGGCTAGTAAGCC