| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039F03 | Sequence | 525 | 009331 (4) | ref|XP_009804551.1| | 3e-22 | PREDICTED: endochitinase A-like isoform X1 [Nicotiana sylvestris] | 681 | 011234 (5) | ref|XP_010654169.1| | 1e-19 | PREDICTED: mucin-12-like isoform X2 [Vitis vinifera] |
| JMSF024A09 | Sequence | 664 | 009331 (4) | ref|XP_009804551.1| | 2e-24 | PREDICTED: endochitinase A-like isoform X1 [Nicotiana sylvestris] | 727 | 011234 (5) | emb|CAN77490.1| | 2e-20 | hypothetical protein VITISV_010725 [Vitis vinifera] |
| JMSF027H15 | Sequence | 676 | 009331 (4) | ref|XP_009804551.1| | 1e-24 | PREDICTED: endochitinase A-like isoform X1 [Nicotiana sylvestris] | 791 | 011234 (5) | ref|XP_004246841.1| | 1e-22 | PREDICTED: endochitinase A-like [Solanum lycopersicum] |
| JMSF035F02 | Sequence | 683 | 009331 (4) | ref|XP_009804551.1| | 1e-24 | PREDICTED: endochitinase A-like isoform X1 [Nicotiana sylvestris] | 727 | 011234 (5) | emb|CAN77490.1| | 2e-19 | hypothetical protein VITISV_010725 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMSF035F02+ CCAGCAGAAGACGAGTTCATGCTACTCGAAGAAGTACTTTTCCCCGAGGACG
JMSF027H15+ AAGACGAGTTCATGCTACTCGAAGAAGTACTTTTCCCCGAGGACG
JMSF024A09+ GACG
____________________________________________________________
consensus CCAGCAGAAGACGAGTTCATGCTACTCGAAGAAGTACTTTTCCCCGAGGACG
. : . : . : . : . : . :
JMSF035F02+ TAAATGCCCCTATAGACGAACTGTTTTGTGAAGCTAGATCCTTCGGGGAATCAGCAGGCG
JMSF027H15+ TAAATGCCCCTATAGACGAACTGTTTTGTGAAGCTAGATCCTTCGGGGAATCAGCAGGCG
JMSF024A09+ TAAATGCCCCTATAGACGAACTGTTTTGTGAAGCTAGATCCTTCGGGGAATCAGCAGGCG
____________________________________________________________
consensus TAAATGCCCCTATAGACGAACTGTTTTGTGAAGCTAGATCCTTCGGGGAATCAGCAGGCG
. : . : . : . : . : . :
JMSF035F02+ TAGAATCTAACTCAGTTGAATCGGGATGTTTCTCTACAGTGTTCTCTTCCTCATCCAGGG
JMSF027H15+ TAGAATCTAACTCAGTTGAATCGGGATGTTTCTCTACAGTGTTCTCTTCCTCATCCAGGG
JMFF039F03+ CTTCCTCATCCAGGG
JMSF024A09+ TAGAATCTAACTCAGTTGAATCGGGATGTTTCTCTACAGTGTTCTCTTCCTCATCCAGGG
____________________________________________________________
consensus TAGAATCTAACTCAGTTGAATCGGGATGTTTCTCTACAGTGTTCTCTTCCTCATCCAGGG
. : . : . : . : . : . :
JMSF035F02+ GGGGATATGAAGGTGCCCGGGGCAGCGAAACAAGCCAGTCATAATCACTTGTGTCATTCT
JMSF027H15+ GGGGATATGAAGGTGCCCGGGGCAGCGAAACAAGCCAGTCATAATCACTTGTGTCATTCT
JMFF039F03+ AGGGATATGAAGGTGCCCGGGGCAGCGAAACAAGCCAGTCATAATCACTTGTGTCATTCT
JMSF024A09+ AGGGATATGAAGGTGCCCGGGGCAGCGAAACAAGCCAGTCATAATCACTTGTGTCATTCT
____________________________________________________________
consensus GGGGATATGAAGGTGCCCGGGGCAGCGAAACAAGCCAGTCATAATCACTTGTGTCATTCT
. : . : . : . : . : . :
JMSF035F02+ CAGAACTCAGGAAATTTTCTTTGGCAGTTGAATCTGCAGGTGAGTTTTCAAACAATGAAT
JMSF027H15+ CAGAACTCAGGAAATTTTCTTTGGCAGTTGAATCTGCAGGTGAGTTTTCAAACAATGAAT
JMFF039F03+ CAGAACTCAGGAAATTTTCTTTGGCAGTTGAATCTGCAGGTGAGTTTTCAAACAATGAAT
JMSF024A09+ CAGAACTCAGGAAATTTTCTTTGGCAGTTGAATCTGCAGGTGAGTTTTCAAACAATGAAT
____________________________________________________________
consensus CAGAACTCAGGAAATTTTCTTTGGCAGTTGAATCTGCAGGTGAGTTTTCAAACAATGAAT
. : . : . : . : . : . :
JMSF035F02+ CATTAAACTCCTCAAAGATCCCAGAATGAATATGATGATCCTCCCTCTCTTTTACACTGC
JMSF027H15+ CATTAAACTCCTCAAAGATCCCAGAATGAATATGATGATCCTCCCTCTCTTTTACACTGC
JMFF039F03+ CATTAAACTCCTCAAAGATCCCAGAATGAATATGATGATCCTCCCTCTCTTTTACACTGC
JMSF024A09+ CATTAAACTCCTCAAAGATCCCAGAATGAATATGATGATCCTCCCTCTCTTTTACACTGC
____________________________________________________________
consensus CATTAAACTCCTCAAAGATCCCAGAATGAATATGATGATCCTCCCTCTCTTTTACACTGC
. : . : . : . : . : . :
JMSF035F02+ GCCTCATCTGAAGAAAAATAGCAAGATCTTCATCCACCTCTTTCATCACCATCCCAAGAG
JMSF027H15+ GCCTCATCTGAAGAAAAATAGCAAGATCTTCATCCACCTCTTTCATCACCATCCCAAGAG
JMFF039F03+ GCCTCATCTGAAGAAAAATAGCAAGATCTTCATCCACCTCTTTCATCACCATCCCAAGAG
JMSF024A09+ GCCTCATCTGAAGAAAAATAGCAAGATCTTCATCCACCTCTTTCATCACCATCCCAAGAG
____________________________________________________________
consensus GCCTCATCTGAAGAAAAATAGCAAGATCTTCATCCACCTCTTTCATCACCATCCCAAGAG
. : . : . : . : . : . :
JMSF035F02+ TCCTTTCCTGCGGCCTGCACTGCACTGATGC
JMSF027H15+ TCCTTTCCTGCGGCCTGCACTGCACTGATGC
JMFF039F03+ TCCTTTCCTGCGGCCTGCACTGCACTGATGC
JMSF024A09+ TCCTTTCCTGCGGCCTGCACTGCACTGATGCCTGCATTTTGAAACTCCAATCTTTACAGA
____________________________________________________________
consensus TCCTTTCCTGCGGCCTGCACTGCACTGATGCCTGCATTTTGAAACTCCAATCTTTACAGA
. : . : . : . : . : . :
JMSF024A09+ AGCAAACTAATACAGATTGCCCAAGCTTCAAATCCAAAACCCATTTATTTTAACTTCATC
____________________________________________________________
consensus AGCAAACTAATACAGATTGCCCAAGCTTCAAATCCAAAACCCATTTATTTTAACTTCATC
. : . : . : . : . : . :
JMSF024A09+ TCCATGGATCTAACTTGGAGAAAAGACCAAATTAACAAGTTTTCCCAGCTAAGTTCAAGA
____________________________________________________________
consensus TCCATGGATCTAACTTGGAGAAAAGACCAAATTAACAAGTTTTCCCAGCTAAGTTCAAGA
. : . : . : . : . : . :
JMSF024A09+ AACAGGTGAATACTCAGTTTATGCACCTAAAGTACTAGAATATAGAGTAATTCCAATAAC
____________________________________________________________
consensus AACAGGTGAATACTCAGTTTATGCACCTAAAGTACTAGAATATAGAGTAATTCCAATAAC
. : . : . : . : . : . :
JMSF024A09+ CCAACCAAGAAAACAACACACCCACTCTCTTAAAATTTGATAAAAATGTATAGATCAACC
____________________________________________________________
consensus CCAACCAAGAAAACAACACACCCACTCTCTTAAAATTTGATAAAAATGTATAGATCAACC