Contig 009321:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022I05Sequence675009321 (2)sp|Q40593.1|VDE_TOBAC6e-34RecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor [Nicot775001343 (5)ref|XP_009607573.1|4e-93PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana tomentosiformis]
JMSF027C08Sequence651009321 (2)gb|AFP57681.1|2e-52violaxanthin de-epoxidase [Nicotiana tabacum]798001343 (5)gb|AFP57681.1|3e-46violaxanthin de-epoxidase [Nicotiana tabacum]

Alignment

This contig is upended


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JMSF027C08+                                                      TTCAAACAAATCACCGC
                      ____________________________________________________________
consensus                                                        TTCAAACAAATCACCGC
 
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JMSF027C08+           ACTTTATCTGGCATTCTGTTTCGTCAGGTCTGTTATTGCAAGTCTGGAGACAAGCAACAT
JMSF022I05+                                                         GAGACAAGCAACAT
                      ____________________________________________________________
consensus             ACTTTATCTGGCATTCTGTTTCGTCAGGTCTGTTATTGCAAGTCTGGAGACAAGCAACAT
 
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JMSF027C08+           TGGCTGCACATGAAGGGTTTGCAATACATTTGGCAAGCTCCAACCTGCATTCTTTGAGTA
JMSF022I05+           NGGCTGCACATGAAGGGTTTGCAATACATTTGGCAAGCTCCAACCTGCATTCTTTGAGTA
                      ____________________________________________________________
consensus             TGGCTGCACATGAAGGGTTTGCAATACATTTGGCAAGCTCCAACCTGCATTCTTTGAGTA
 
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JMSF027C08+           AGCAAGTACAAGTTTTAAGAGCATCCACTGCATCGGCCTGTGGAATCACCATTAAGACAA
JMSF022I05+           AGCAAGTACAAGTTTTAAGAGCATCCACTGCATCGGCCTGTGGAATCACCATTAAGACAA
                      ____________________________________________________________
consensus             AGCAAGTACAAGTTTTAAGAGCATCCACTGCATCGGCCTGTGGAATCACCATTAAGACAA
 
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JMSF027C08+           ATGCAGCTACGATAGCAGTTTGGGCAAAGTGGCTCCACTTCCTACCAATGATCAAGGGTA
JMSF022I05+           ATGCAGCTACGATAGCAGTTTGGGCAAAGTGGCTCCACTTCCTACCAATGATCAAGGGTA
                      ____________________________________________________________
consensus             ATGCAGCTACGATAGCAGTTTGGGCAAAGTGGCTCCACTTCCTACCAATGATCAAGGGTA
 
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JMSF027C08+           ATGCCTTCCAGTATTTGCATATTTCCTTATACATATCCATGTTATTCTTGCTTGTCGAAG
JMSF022I05+           ATGCCTTCCAGTATTTGCATATTTCCTTATACATATCCATGTTATTCTTGCTTGTCGAAG
                      ____________________________________________________________
consensus             ATGCCTTCCAGTATTTGCATATTTCCTTATACATATCCATGTTATTCTTGCTTGTCGAAG
 
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JMSF027C08+           AGCTATTCTCTTTTCTAAGTAAAGGTGAGTCTGGGCATTTACGGCATCTAGGACCCAATG
JMSF022I05+           AGCTATTCTCTTTTCTAAGTAAAGGTGAGTCTGGGCATTTACGGCATCTAGGACCCAATG
                      ____________________________________________________________
consensus             AGCTATTCTCTTTTCTAAGTAAAGGTGAGTCTGGGCATTTACGGCATCTAGGACCCAATG
 
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JMSF027C08+           CACCGCATATCTTAGGAGCTTTAAGAAACTTCAGGTGTCTGGGTCTCCATCTATTTGGCA
JMSF022I05+           CACCGCATATCTTAGGAGCTTTAAGAAACTTCAGGTGTCTGGGTCTCCATCTATTTGGCA
                      ____________________________________________________________
consensus             CACCGCATATCTTAGGAGCTTTAAGAAACTTCAGGTGTCTGGGTCTCCATCTATTTGGCA
 
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JMSF027C08+           AGAATTTCACTATTACTAGACTCTCACAGAAGTCACCTGTGGTCCAGCTGCACTTATTAT
JMSF022I05+           AGAATTTCACTATTACTAGACTCTCACAGAAGTCACCTGTGGTCCAGCTGCACTTATTAT
                      ____________________________________________________________
consensus             AGAATTTCACTATTACTAGACTCTCACAGAAGTCACCTGTGGTCCAGCTGCACTTATTAT
 
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JMSF027C08+           CACTCAGAACCTGCGATCCAATACGATAATGGATGGCCTGATTGGCAAGAAAATGCGATT
JMSF022I05+           CACTCAGAACCTGCGATCCAATACGATAATGGATGGCCTGATTGGCAAGAAAATGCGATT
                      ____________________________________________________________
consensus             CACTCAGAACCTGCGATCCAATACGATAATGGATGGCCTGATTGGCAAGAAAATGCGATT
 
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JMSF027C08+           GTAAAGCAAAGGCCATTCTTCAACCTGG                                
JMSF022I05+           GTAAAGCAAAGGCCATTCTTCAACCTGGAGACAGCCAATAGCAACCTGGGATTAAAGTGA
                      ____________________________________________________________
consensus             GTAAAGCAAAGGCCATTCTTCAACCTGGAGACAGCCAATAGCAACCTGGGATTAAAGTGA
 
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JMSF022I05+           GCAATGGCGCAGGGCAATGCGGGTAAAGCATAGAATTCGGGCAGAATGAAGAGCAAAAGG
                      ____________________________________________________________
consensus             GCAATGGCGCAGGGCAATGCGGGTAAAGCATAGAATTCGGGCAGAATGAAGAGCAAAAGG
 
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JMSF022I05+           GAGAAAAATGAACGAAGGGCTAAGGAGCTTTCAGCTGGATAACACAATCTTGTGATGGTC
                      ____________________________________________________________
consensus             GAGAAAAATGAACGAAGGGCTAAGGAGCTTTCAGCTGGATAACACAATCTTGTGATGGTC