Contig 009320:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS112C03Sequence642009320 (6)ref|XP_011073424.1|6e-49PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloropla
JMSF003L12Sequence334009320 (6)721009320 (6)ref|XP_006427289.1|2e-36hypothetical protein CICLE_v10025838mg [Citrus clementina] gb|ESR40529.1| hypoth
JMSF008K01Sequence440009320 (6)ref|XP_011073424.1|4e-05PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloropla770020298ref|XP_011073424.1|3e-42PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloropla
JMSF015F05Sequence582009320 (6)ref|XP_011073424.1|1e-29PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloropla771012559 (2)ref|XP_011073424.1|1e-35PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloropla
JMSF022H06Sequence648009320 (6)ref|XP_011073424.1|2e-29PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloropla757012559 (2)ref|XP_011073424.1|1e-35PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloropla

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-                                                                  TATA
                      ____________________________________________________________
consensus                                                                     TATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          CACATTACCCTTTCATAGCGGCTTTAGTGTCATATAACCAACCTACATAACTGTACCAAA
                      ____________________________________________________________
consensus             CACATTACCCTTTCATAGCGGCTTTAGTGTCATATAACCAACCTACATAACTGTACCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          ATCCTTCAATAGGACTATGGAGATCTTTTGTAGTATCCGCATACTGATGGTGATATCTAT
                      ____________________________________________________________
consensus             ATCCTTCAATAGGACTATGGAGATCTTTTGTAGTATCCGCATACTGATGGTGATATCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          GGTTACTCACCCACCCAATTGGATCTCCCTAAAGCATAAAAGTTATGTTGTAAAAAAAAT
                      ____________________________________________________________
consensus             GGTTACTCACCCACCCAATTGGATCTCCCTAAAGCATAAAAGTTATGTTGTAAAAAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          AGTGTTACCGTATTCATAGTCTACCTAGCTAGTTACTTGATAAGATGAGACCTGAAGAGC
JMFS112C03+                                                             CCTGAAGAGC
JMSF015F05+                                                             CCTGAAGAGC
JMSF022H06+                                                             CCTGAAGAGC
                      ____________________________________________________________
consensus             AGTGTTACCGTATTCATAGTCTACCTAGCTAGTTACTTGATAAGATGAGACCTGAAGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          ATGAACACCGCAATAGGCAAAAAAGTACTCTAGCCATTTGGGAAGCTTGAAACTTCTGTG
JMFS112C03+           ATGAACACCGCAATAGGCAAAAAAGTACTCTAGCCATTTGGGAAGCTTGAAACTTCTGTG
JMSF015F05+           ATGAACACCGCAATAGGCAAAAAAGTACTCTAGCCATTTGGGAAGCTTGAAACTTCTGTG
JMSF022H06+           ATGAACACCGCAATAGGCAAAAAAGTACTCTAGCCATTTGGGAAGCTTGAAACTTCTGTG
                      ____________________________________________________________
consensus             ATGAACACCGCAATAGGCAAAAAAGTACTCTAGCCATTTGGGAAGCTTGAAACTTCTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          ACTCAGATTCCGATGATAAGAGAGACTAATACCCAGCATAGTGACGATGTACAA-CCCAA
JMFS112C03+           ACTCAGATTCCGATGATAAGAGAGACTAATACCCAGCATAGTGACGATGTACAA-CCCAA
JMSF015F05+           ACTCAGATTCCGATGATAAGAGAGACTAATACCCAGCATAGTGACGATGTACAA-CCCAA
JMSF008K01+                                          CCCAGCATAGTGACGATGTACAACCCCAA
JMSF022H06+           ACTCAGATTCCGATGATAAGAGAGACTAATACCCAGCATAGTGACGATGTACAA-CCCAA
                      ____________________________________________________________
consensus             ACTCAGATTCCGATGATAAGAGAGACTAATACCCAGCATAGTGACGATGTACAA-CCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          ACGCAACGACAAAAGCATCCCAAGTGAAACAAAACGGGGCAAACAGACAAAGGCAATGTG
JMFS112C03+           ACGCAACGACAAAAGCATCCCAAGTGAAACAAAACGGGGCAAACAGACAAAGGCAATGTG
JMSF015F05+           ACGCAACGACAAAAGCATCCCAAGTGAAACAAAACGGGGCAAACAGACAAAGGCAATGTG
JMSF008K01+           ACGCAACGACAAAAGCATCCCAAGTGAAACAAAACGGGGCAAACAGACAAAGGCAATGTG
JMSF022H06+           ACGCAACGACAAAAGCATCCCAAGTGAAACAAAACGGGGCAAACAGACAAAGGCAATGTG
                      ____________________________________________________________
consensus             ACGCAACGACAAAAGCATCCCAAGTGAAACAAAACGGGGCAAACAGACAAAGGCAATGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          CCAACGGAAACATCACCTTCACCATCTGCGAACCAGGCGCCACTTCCAAAGATTTCGCCA
JMFS112C03+           CCAACGGAAACATCACCTTCACCATCTGCGAACCAGGCGCCACTTCCAAAGATTTCGCCA
JMSF015F05+           CCAACGGAAACATCACCTTCACCATCTGCGAACCAGGCGCCACTTCCAAAGATTTCGCCA
JMSF008K01+           CCAACGGAAACATCACCTTCACCATCTGCGAACCAGGCGCCACTTCCAAAGATTTCGCCA
JMSF003L12+                                     TGCGAACCAGGCGCCACTTCCAAAGATTTCGCCA
JMSF022H06+           CCAACGGAAACATCACCTTCACCATCTGCGAACCAGGCGCCACTTCCAAAGATTTCGCCA
                      ____________________________________________________________
consensus             CCAACGGAAACATCACCTTCACCATCTGCGAACCAGGCGCCACTTCCAAAGATTTCGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          TTCTCGTCCAAAACTCAACCCTCTTCTGATTCTTTGCCGCTTGTGGTGTGTCTTCTCTGT
JMFS112C03+           TTCTCGTCCAAAACTCAACCCTCTTCTGATTCTTTGCCGCTTGTGGTGTGTCTTCTCTGT
JMSF015F05+           TTCTCGTCCAAAACTCAACCCTCTTCTGATTCTTTGCCGCTTGTGGTGTGTCTTCTCTGT
JMSF008K01+           TTCTCGTCCAAAACTCAACCCTCTTCTGATTCTTTGCCGCTTGTGGTGTGTCTTCTCTGT
JMSF003L12+           TTCTCGTCCAAAACTCAACCCTCTTCTGATTCTTTGCCGCTTGTGGTGTGTCTTCTCTGT
JMSF022H06+           TTCTCGTCCAAAACTCAACCCTCTTCTGATTCTTTGCCGCTTGTGGTGTGTCTTCTCTGT
                      ____________________________________________________________
consensus             TTCTCGTCCAAAACTCAACCCTCTTCTGATTCTTTGCCGCTTGTGGTGTGTCTTCTCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          CATCAGAAGCGGGGCGAATGCACACAATGGGTGATAACCTTTTATATTTTTCCTCCTTGC
JMFS112C03+           CATCAGAAGCGGGGCGAATGCACACAATGGGTGATAACCTTTTATATTTTTCCTCCTTGC
JMSF015F05+           CATCAGAAGCGGGGCGAATGCACACAATGGGTGATAACCTTTTATATTTTTCCTCCTTGC
JMSF008K01+           CATCAGAAGCGGGGCGAATGCACACAATGGGTGATAACCTTTTATATTTTTCCTCCTTGC
JMSF003L12+           CATCAGAAGCGGGGCGAATGCACACAATGGGTGATAACCTTTTATATTTTTCCTCCTTGC
JMSF022H06+           CATCAGAAGCGGGGCGAATGCACACAATGGGTGATAACCTTTTATATTTTTCCTCCTTGC
                      ____________________________________________________________
consensus             CATCAGAAGCGGGGCGAATGCACACAATGGGTGATAACCTTTTATATTTTTCCTCCTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          AATTAAAGAATCGATTTTGTCCTAGTTTTGTTGTGTAAATGAGGGGGGAACTTTGAAGAC
JMFS112C03+           AATTAAAGAATCGATTTTGTCCTAGTTTTGTTGTGTAAATGAGGGGGGAACTTTGAAGAC
JMSF015F05+           AATTAAAGAATCGATTTTGTCCTAGTTTTGTTGTGTAAATGAGGGGGGAACTTTGAAGAC
JMSF008K01+           AATTAAAGAATCGATTTTGTCCTAGTTTTGTTGTGTAAATGAGGGGGGAACTTTGAAGAC
JMSF003L12+           AATTAAAGAATCGATTTTGTCCTAGTTTTGTTGTGTAAATGAGGGGGGAACTTTGAAGAC
JMSF022H06+           AATTAAAGAATCGATTTTGTCCTAGTTTTGTTGTGTAAATGAGGGGGGAACTTTGAAGAC
                      ____________________________________________________________
consensus             AATTAAAGAATCGATTTTGTCCTAGTTTTGTTGTGTAAATGAGGGGGGAACTTTGAAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003L12-          TTGTTGGGGTTTGCTTTTCCCTAAGTAAAGGGCTGCAGCTTTGTGGTAGTGAAAAGAA  
JMFS112C03+           TTGTTGGGGTTTGCTTTTCCCTAAGTAAAGGGCTGCAGCTTTGTGGTAGTGAAAAGAAAA
JMSF015F05+           TTGTTGGGGTTTGCTTTTCCCTAAGTAAAGGGCTGCAGCTTTGTGGTAGTGAAAAGAAAA
JMSF008K01+           TTGTTGGGGTTTGCTTTTCCCTAAGTAAAGGGCTGCAGCTTTGTGGTAGTGAAAAGAAAA
JMSF003L12+           TTGTTGGGGTTTGCTTTTCCCTAAGTAAAGGGCTGCAGCTTTGTGGTAGTGAAAAGAAAA
JMSF022H06+           TTGTTGGGGTTTGCTTTTCCCTAAGTAAAGGGCTGCAGCTTTGTGGTAGTGAAAAGAAAA
                      ____________________________________________________________
consensus             TTGTTGGGGTTTGCTTTTCCCTAAGTAAAGGGCTGCAGCTTTGTGGTAGTGAAAAGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS112C03+           ATGGTTTAGCTGCTGGTGACGGCCACAGCGATAGCGATGATAAGC               
JMSF015F05+           ATGGTTTAGCTGCTGGTGACGGCCACAGCGATAGCGATGATAAGCATGCCATTTTCTTC 
JMSF008K01+           ATGGTTTAGCTGCTGGTGACGGCCACAGCGATAGCGATGATAAGCATGCC          
JMSF003L12+           ATGGTTTAGCTGCTGGTGACGGCCACAGCGATAGCGATGATAAGCATGCCATTTTCTTC 
JMSF022H06+           ATGGTTTAGCTGCTGGTGACGGCCACAGCGATAGCGATGATAAGCATGCCATTTTCTTCC
                      ____________________________________________________________
consensus             ATGGTTTAGCTGCTGGTGACGGCCACAGCGATAGCGATGATAAGCATGCCATTTTCTTCC