Contig 009319:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005K18Sequence463009319 (3)ref|XP_004247952.1|2e-30PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]707013615 (2)
JMSF019O22Sequence291009319 (3)ref|XP_004247952.1|2e-19PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]618021443ref|XP_006358008.1|8e-21PREDICTED: ribosome biogenesis protein BRX1 homolog [Solanum tuberosum]
JMSF022F09Sequence689009319 (3)ref|XP_004247952.1|1e-49PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]794013615 (2)ref|XP_009623176.1|2e-16PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tomentosiformis

Alignment

This contig is upended


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JMSF022F09+ ATGCACTGCTAAANCCAGACATCATAGTCCAAG
                      ____________________________________________________________
consensus ATGCACTGCTAAANCCAGACATCATAGTCCAAG
 
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JMSF022F09+ AATTAGCCCGTAAGCTATAAGCCTTGACTATGTTCTCATGCCTGCCGCCATTTTTCTCAA
                      ____________________________________________________________
consensus AATTAGCCCGTAAGCTATAAGCCTTGACTATGTTCTCATGCCTGCCGCCATTTTTCTCAA
 
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JMSF022F09+ AACTGAACATTTTCACAACTTTATAATCATTAGTTCGTTCGTCATAGCCAAACCCATATC
                      ____________________________________________________________
consensus AACTGAACATTTTCACAACTTTATAATCATTAGTTCGTTCGTCATAGCCAAACCCATATC
 
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JMSF022F09+ TAATATAACACCCGGACTTCGTCTGAATAAACGAATCTGGAAATTCCCTGGATTTTCTCG
                      ____________________________________________________________
consensus TAATATAACACCCGGACTTCGTCTGAATAAACGAATCTGGAAATTCCCTGGATTTTCTCG
 
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JMFF005K18+ CCACAGAATCAGTTTAAAATGGACAGTGGATAGACACAGCAATCCATTAC
JMSF022F09+ TGGAAGGGTTCCACAGAATCAGTTTAAAATGGACAGTGGATAGACACAGCAATCCATTAC
                      ____________________________________________________________
consensus TGGAAGGGTTCCACAGAATCAGTTTAAAATGGACAGTGGATAGACACAGCAATCCATTAC
 
. : . : . : . : . : . :
JMSF019O22+ GAGCTCAACTA
JMFF005K18+ AGGAGCCCAGGATTCTCGGAGATCTACACGGGCTTTTGGAGAAACGACTGAGCTCAACTA
JMSF022F09+ AGGAGCCCAGGATTCTCGGAGATCTACACGGGCTTTTGGAGAAAC----GAGCTCAACTA
                      ____________________________________________________________
consensus AGGAGCCCAGGATTCTCGGAGATCTACACGGGCTTTTGGAGAAACGACTGAGCTCAACTA
 
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JMSF019O22+ AAGTGGGAGAGGAATTCTCAGGGACTATGGAGCTAATGGAACAGATCTTACCCAGACCAG
JMFF005K18+ AAGTGGGAGAGGAATTCTCAGGGACTATGGAGCTAATGGAACAGATCTTACCCAGACCAG
JMSF022F09+ AAGTGGGAGAGGAATTCTCAGGGACTATGGAGCTAATGGAACAGATCTTACCCAGACCAG
                      ____________________________________________________________
consensus AAGTGGGAGAGGAATTCTCAGGGACTATGGAGCTAATGGAACAGATCTTACCCAGACCAG
 
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JMSF019O22+ AGAATGAGGCGATGAGAAAAAGCCTGTTCCGGCTAGATTCGTGCTTGTTCTTGCAAACAT
JMFF005K18+ AGAATGAGGCGATGAGAAAAAGCCTGTTCCGGCTAGATTCGTGCTTGTTCTTGCAAACAT
JMSF022F09+ AGAATGAGGCGATGAGAAAAAGCCTGTTCCGGCTAGATTCGTGCTTGTTCTTGCAAACAT
                      ____________________________________________________________
consensus AGAATGAGGCGATGAGAAAAAGCCTGTTCCGGCTAGATTCGTGCTTGTTCTTGCAAACAT
 
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JMSF019O22+ GGAGGTGGGTATTCACGAAATGATGAGTGGATATCAAGGCAAGCCACGATTTGGAAACGC
JMFF005K18+ GGAGGTGGGTATTCACGAAATGATGAGTGGATATCAAGGCAAGCCACGATTTGGAAACGC
JMSF022F09+ GGAGGTGGGTATTCACGAAATGATGAGTGGATATCAAGGCAAGCCACGATTTGGAAACGC
                      ____________________________________________________________
consensus GGAGGTGGGTATTCACGAAATGATGAGTGGATATCAAGGCAAGCCACGATTTGGAAACGC
 
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JMSF019O22+ ACCTGAAGCGCAGGAGGCACTCCACGGGCAATCTTGCTAGGACTTCGGCGATGATTTCTT
JMFF005K18+ ACCTGAAGCGCAGGAGGCACTCCACGGGCAATCTTGCTAGGACTTCGGCGATGATTTCTT
JMSF022F09+ ACCTGAAGCGCAGGAGGCACTCCACGGGCAATCTTGCTAGGACTTCGGCGATGATTTCTT
                      ____________________________________________________________
consensus ACCTGAAGCGCAGGAGGCACTCCACGGGCAATCTTGCTAGGACTTCGGCGATGATTTCTT
 
. : . : . : . : . : . :
JMSF019O22+ GGGGAAGATT
JMFF005K18+ GGGGAAGATTGGCTAGCGGTGATGGTGATTCGTGGAGTGAAAGAGTGGAGGTTTGTTGAG
JMSF022F09+ GGGGAAGATTGGCTAGCGGTGATGGTGATTCGTGGAGTGAAAGAGTGGAGGTTTGTTGAG
                      ____________________________________________________________
consensus GGGGAAGATTGGCTAGCGGTGATGGTGATTCGTGGAGTGAAAGAGTGGAGGTTTGTTGAG
 
. : . : . : . : . : . :
JMFF005K18+ CTAATTGACCCAGTCTTTGCTCTCCACTTGCCATTATTGGGCTCTGATGGGAA
JMSF022F09+ CTAATTGACCCAGTCTTTGCTCTCCACTTGCCATTATTGGGCTCTGATGGGAAGGTTGGC
                      ____________________________________________________________
consensus CTAATTGACCCAGTCTTTGCTCTCCACTTGCCATTATTGGGCTCTGATGGGAAGGTTGGC