Contig 009319:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005K18Sequence463009319 (3)ref|XP_004247952.1|2e-30PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]707013615 (2)
JMSF019O22Sequence291009319 (3)ref|XP_004247952.1|2e-19PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]618021443ref|XP_006358008.1|8e-21PREDICTED: ribosome biogenesis protein BRX1 homolog [Solanum tuberosum]
JMSF022F09Sequence689009319 (3)ref|XP_004247952.1|1e-49PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]794013615 (2)ref|XP_009623176.1|2e-16PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tomentosiformis

Alignment

This contig is upended


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JMSF022F09+                                      ATGCACTGCTAAANCCAGACATCATAGTCCAAG
                      ____________________________________________________________
consensus                                        ATGCACTGCTAAANCCAGACATCATAGTCCAAG
 
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JMSF022F09+           AATTAGCCCGTAAGCTATAAGCCTTGACTATGTTCTCATGCCTGCCGCCATTTTTCTCAA
                      ____________________________________________________________
consensus             AATTAGCCCGTAAGCTATAAGCCTTGACTATGTTCTCATGCCTGCCGCCATTTTTCTCAA
 
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JMSF022F09+           AACTGAACATTTTCACAACTTTATAATCATTAGTTCGTTCGTCATAGCCAAACCCATATC
                      ____________________________________________________________
consensus             AACTGAACATTTTCACAACTTTATAATCATTAGTTCGTTCGTCATAGCCAAACCCATATC
 
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JMSF022F09+           TAATATAACACCCGGACTTCGTCTGAATAAACGAATCTGGAAATTCCCTGGATTTTCTCG
                      ____________________________________________________________
consensus             TAATATAACACCCGGACTTCGTCTGAATAAACGAATCTGGAAATTCCCTGGATTTTCTCG
 
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JMFF005K18+                     CCACAGAATCAGTTTAAAATGGACAGTGGATAGACACAGCAATCCATTAC
JMSF022F09+           TGGAAGGGTTCCACAGAATCAGTTTAAAATGGACAGTGGATAGACACAGCAATCCATTAC
                      ____________________________________________________________
consensus             TGGAAGGGTTCCACAGAATCAGTTTAAAATGGACAGTGGATAGACACAGCAATCCATTAC
 
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JMSF019O22+                                                            GAGCTCAACTA
JMFF005K18+           AGGAGCCCAGGATTCTCGGAGATCTACACGGGCTTTTGGAGAAACGACTGAGCTCAACTA
JMSF022F09+           AGGAGCCCAGGATTCTCGGAGATCTACACGGGCTTTTGGAGAAAC----GAGCTCAACTA
                      ____________________________________________________________
consensus             AGGAGCCCAGGATTCTCGGAGATCTACACGGGCTTTTGGAGAAACGACTGAGCTCAACTA
 
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JMSF019O22+           AAGTGGGAGAGGAATTCTCAGGGACTATGGAGCTAATGGAACAGATCTTACCCAGACCAG
JMFF005K18+           AAGTGGGAGAGGAATTCTCAGGGACTATGGAGCTAATGGAACAGATCTTACCCAGACCAG
JMSF022F09+           AAGTGGGAGAGGAATTCTCAGGGACTATGGAGCTAATGGAACAGATCTTACCCAGACCAG
                      ____________________________________________________________
consensus             AAGTGGGAGAGGAATTCTCAGGGACTATGGAGCTAATGGAACAGATCTTACCCAGACCAG
 
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JMSF019O22+           AGAATGAGGCGATGAGAAAAAGCCTGTTCCGGCTAGATTCGTGCTTGTTCTTGCAAACAT
JMFF005K18+           AGAATGAGGCGATGAGAAAAAGCCTGTTCCGGCTAGATTCGTGCTTGTTCTTGCAAACAT
JMSF022F09+           AGAATGAGGCGATGAGAAAAAGCCTGTTCCGGCTAGATTCGTGCTTGTTCTTGCAAACAT
                      ____________________________________________________________
consensus             AGAATGAGGCGATGAGAAAAAGCCTGTTCCGGCTAGATTCGTGCTTGTTCTTGCAAACAT
 
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JMSF019O22+           GGAGGTGGGTATTCACGAAATGATGAGTGGATATCAAGGCAAGCCACGATTTGGAAACGC
JMFF005K18+           GGAGGTGGGTATTCACGAAATGATGAGTGGATATCAAGGCAAGCCACGATTTGGAAACGC
JMSF022F09+           GGAGGTGGGTATTCACGAAATGATGAGTGGATATCAAGGCAAGCCACGATTTGGAAACGC
                      ____________________________________________________________
consensus             GGAGGTGGGTATTCACGAAATGATGAGTGGATATCAAGGCAAGCCACGATTTGGAAACGC
 
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JMSF019O22+           ACCTGAAGCGCAGGAGGCACTCCACGGGCAATCTTGCTAGGACTTCGGCGATGATTTCTT
JMFF005K18+           ACCTGAAGCGCAGGAGGCACTCCACGGGCAATCTTGCTAGGACTTCGGCGATGATTTCTT
JMSF022F09+           ACCTGAAGCGCAGGAGGCACTCCACGGGCAATCTTGCTAGGACTTCGGCGATGATTTCTT
                      ____________________________________________________________
consensus             ACCTGAAGCGCAGGAGGCACTCCACGGGCAATCTTGCTAGGACTTCGGCGATGATTTCTT
 
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JMSF019O22+           GGGGAAGATT                                                  
JMFF005K18+           GGGGAAGATTGGCTAGCGGTGATGGTGATTCGTGGAGTGAAAGAGTGGAGGTTTGTTGAG
JMSF022F09+           GGGGAAGATTGGCTAGCGGTGATGGTGATTCGTGGAGTGAAAGAGTGGAGGTTTGTTGAG
                      ____________________________________________________________
consensus             GGGGAAGATTGGCTAGCGGTGATGGTGATTCGTGGAGTGAAAGAGTGGAGGTTTGTTGAG
 
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JMFF005K18+           CTAATTGACCCAGTCTTTGCTCTCCACTTGCCATTATTGGGCTCTGATGGGAA       
JMSF022F09+           CTAATTGACCCAGTCTTTGCTCTCCACTTGCCATTATTGGGCTCTGATGGGAAGGTTGGC
                      ____________________________________________________________
consensus             CTAATTGACCCAGTCTTTGCTCTCCACTTGCCATTATTGGGCTCTGATGGGAAGGTTGGC