Contig 009313:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS099D06Sequence583009313 (5)emb|CDP07141.1|2e-17unnamed protein product [Coffea canephora]
JMFS111E04Sequence608009313 (5)
JMSF021I19Sequence535009313 (5)735007677 (7)ref|XP_009619838.1|6e-81PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]
JMSF032N20Sequence531009313 (5)671007677 (7)ref|NP_001233771.1|2e-84auxin response factor 4 [Solanum lycopersicum] gb|ABC69715.1| auxin response fac
JMSF044D13Sequence708009313 (5)ref|XP_009592534.1|8e-28PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]727007677 (7)ref|XP_009619838.1|5e-89PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044D13+ AAGAAGCTGAACATCCTGA
                      ____________________________________________________________
consensus AAGAAGCTGAACATCCTGA
 
. : . : . : . : . : . :
JMSF044D13+ ACTGAGCAGAAGATCTGGGGGTGGAGGGGAAGGGTGGGCAGGTCCATCTGAAAGGTGGGA
                      ____________________________________________________________
consensus ACTGAGCAGAAGATCTGGGGGTGGAGGGGAAGGGTGGGCAGGTCCATCTGAAAGGTGGGA
 
. : . : . : . : . : . :
JMFS099D06+ TGGCCTTGGGGGAAATAGAGAACCACATTCCCTTTC
JMSF044D13+ GGAAAGGGAGAGGCCTGCTCCAAATGGCCTTGGGGGAAATAGAGAACCACATTCCCTTTC
                      ____________________________________________________________
consensus GGAAAGGGAGAGGCCTGCTCCAAATGGCCTTGGGGGAAATAGAGAACCACATTCCCTTTC
 
. : . : . : . : . : . :
JMFS099D06+ TTGGGCAGGGAGGTGAGAGGGCCAGCACAGGCATGCCAGAGCTCCATGTAGATTGAAGAT
JMSF044D13+ TTGGGCAGGGAGGTGAGAGGGCCAGCACAGGCATGCCAGAGCTCCATGTAGATTGAAGAT
                      ____________________________________________________________
consensus TTGGGCAGGGAGGTGAGAGGGCCAGCACAGGCATGCCAGAGCTCCATGTAGATTGAAGAT
 
. : . : . : . : . : . :
JMFS099D06+ GGTGGAGCTGAGGAAGAAGAAGAAAAGGCATTTGAGGAGGAGGAGCATGATGAGGAAGTG
JMSF044D13+ GGTGGAGCTGAGGAAGAAGAAGAAAAGGCATTTGAGGAGGAGGAGCATGATGAGGAAGTG
JMFS111E04+ AGGAGGAGGAGCATGATGAGGAAGTG
                      ____________________________________________________________
consensus GGTGGAGCTGAGGAAGAAGAAGAAAAGGCATTTGAGGAGGAGGAGCATGATGAGGAAGTG
 
. : . : . : . : . : . :
JMFS099D06+ GAAGTGGAGAGACCACCCCCCTTCTCACACTCTCCATTACAAAATGATGCATTCTTCTGC
JMSF044D13+ GAAGTGGAGAGACCACCCCCCTTCTCACACTCTCCATTACAAAATGATGCATTNTTNTGC
JMFS111E04+ GAAGTGGAGAGACCACCCCCCTTCTCACACTCTCCATTACAAAATGATGCATTCTTCTGC
                      ____________________________________________________________
consensus GAAGTGGAGAGACCACCCCCCTTCTCACACTCTCCATTACAAAATGATGCATTCTTCTGC
 
. : . : . : . : . : . :
JMFS099D06+ TTCTTCTCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
JMSF044D13+ TTNTTCTCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
JMFS111E04+ TTCTTCTCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
JMSF032N20+ TCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
JMSF021I19+ CTCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
                      ____________________________________________________________
consensus TTCTTCTCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
 
. : . : . : . : . : . :
JMFS099D06+ CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
JMSF044D13+ CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
JMFS111E04+ CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
JMSF032N20+ CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
JMSF021I19+ CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
                      ____________________________________________________________
consensus CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
 
. : . : . : . : . : . :
JMFS099D06+ CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
JMSF044D13+ CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
JMFS111E04+ CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
JMSF032N20+ CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
JMSF021I19+ CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
                      ____________________________________________________________
consensus CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
 
. : . : . : . : . : . :
JMFS099D06+ GGGACTTGGGAGGAAGAGCAATCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
JMSF044D13+ GGGACTTGGGAGGAAGAGCAATCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
JMFS111E04+ GGGACTTGGGAGGAAGAGCAATCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
JMSF032N20+ GGGACTTGGGAGGAAGAGCAATCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
JMSF021I19+ GGGACTTGGGAGGAAGAGCANTCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
                      ____________________________________________________________
consensus GGGACTTGGGAGGAAGAGCAATCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
 
. : . : . : . : . : . :
JMFS099D06+ GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
JMSF044D13+ GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
JMFS111E04+ GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
JMSF032N20+ GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
JMSF021I19+ GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
                      ____________________________________________________________
consensus GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
 
. : . : . : . : . : . :
JMFS099D06+ GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
JMSF044D13+ GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
JMFS111E04+ GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
JMSF032N20+ GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
JMSF021I19+ GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
                      ____________________________________________________________
consensus GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
 
. : . : . : . : . : . :
JMFS099D06+ ACGG
JMSF044D13+ ACGGTATTGCTAGACGGATGAGGAAAGC
JMFS111E04+ ACGGTATTGCTAGACGGATGAGGAAAGCGAAAGAAAGTTGTATATATGTGTATATATATA
JMSF032N20+ ACGGTATTGCTAGACGGATGAGGAAAGCGAAAGAAAGTTGTATATATGTGTATATATATA
JMSF021I19+ ACGGTATTGCTAGACGGATGAGGAAAGCGAAAGAAAGTTGTATATATGTGTATATATATA
                      ____________________________________________________________
consensus ACGGTATTGCTAGACGGATGAGGAAAGCGAAAGAAAGTTGTATATATGTGTATATATATA
 
. : . : . : . : . : . :
JMFS111E04+ TATACACATATATATAACAGGGAATTCAAAGCATGATTCCCCTCCCCCATTTTTCGTTCT
JMSF032N20+ TATACACATATATATAACAGGGAATTCAAAGCATGATTCCCCTCCCCCATTTTTCGTTCT
JMSF021I19+ TATACACATATATATAACAGGGAATTCAAAGCATGATTCCCCTCCCCCATTTTTCGTTCT
                      ____________________________________________________________
consensus TATACACATATATATAACAGGGAATTCAAAGCATGATTCCCCTCCCCCATTTTTCGTTCT
 
. : . : . : . : . : . :
JMFS111E04+ GAGAAGGGGGAGCAGATGAAACAGGAGACGTAGACAATTGCT
JMSF032N20+ GAGAAGGGGGAGCAGATGAAACAGGAGACGTAGACAATTGCTAAGGAAGCA
JMSF021I19+ GAGAAGGGGGAGCAGATGAAACAGGAGACGTAGACAATTGCTAAGGAAGCACAGAAGCTC
                      ____________________________________________________________
consensus GAGAAGGGGGAGCAGATGAAACAGGAGACGTAGACAATTGCTAAGGAAGCACAGAAGCTC