Contig 009313:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS099D06Sequence583009313 (5)emb|CDP07141.1|2e-17unnamed protein product [Coffea canephora]
JMFS111E04Sequence608009313 (5)
JMSF021I19Sequence535009313 (5)735007677 (7)ref|XP_009619838.1|6e-81PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]
JMSF032N20Sequence531009313 (5)671007677 (7)ref|NP_001233771.1|2e-84auxin response factor 4 [Solanum lycopersicum] gb|ABC69715.1| auxin response fac
JMSF044D13Sequence708009313 (5)ref|XP_009592534.1|8e-28PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]727007677 (7)ref|XP_009619838.1|5e-89PREDICTED: auxin response factor 4-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF044D13+                                                    AAGAAGCTGAACATCCTGA
                      ____________________________________________________________
consensus                                                      AAGAAGCTGAACATCCTGA
 
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JMSF044D13+           ACTGAGCAGAAGATCTGGGGGTGGAGGGGAAGGGTGGGCAGGTCCATCTGAAAGGTGGGA
                      ____________________________________________________________
consensus             ACTGAGCAGAAGATCTGGGGGTGGAGGGGAAGGGTGGGCAGGTCCATCTGAAAGGTGGGA
 
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JMFS099D06+                                   TGGCCTTGGGGGAAATAGAGAACCACATTCCCTTTC
JMSF044D13+           GGAAAGGGAGAGGCCTGCTCCAAATGGCCTTGGGGGAAATAGAGAACCACATTCCCTTTC
                      ____________________________________________________________
consensus             GGAAAGGGAGAGGCCTGCTCCAAATGGCCTTGGGGGAAATAGAGAACCACATTCCCTTTC
 
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JMFS099D06+           TTGGGCAGGGAGGTGAGAGGGCCAGCACAGGCATGCCAGAGCTCCATGTAGATTGAAGAT
JMSF044D13+           TTGGGCAGGGAGGTGAGAGGGCCAGCACAGGCATGCCAGAGCTCCATGTAGATTGAAGAT
                      ____________________________________________________________
consensus             TTGGGCAGGGAGGTGAGAGGGCCAGCACAGGCATGCCAGAGCTCCATGTAGATTGAAGAT
 
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JMFS099D06+           GGTGGAGCTGAGGAAGAAGAAGAAAAGGCATTTGAGGAGGAGGAGCATGATGAGGAAGTG
JMSF044D13+           GGTGGAGCTGAGGAAGAAGAAGAAAAGGCATTTGAGGAGGAGGAGCATGATGAGGAAGTG
JMFS111E04+                                             AGGAGGAGGAGCATGATGAGGAAGTG
                      ____________________________________________________________
consensus             GGTGGAGCTGAGGAAGAAGAAGAAAAGGCATTTGAGGAGGAGGAGCATGATGAGGAAGTG
 
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JMFS099D06+           GAAGTGGAGAGACCACCCCCCTTCTCACACTCTCCATTACAAAATGATGCATTCTTCTGC
JMSF044D13+           GAAGTGGAGAGACCACCCCCCTTCTCACACTCTCCATTACAAAATGATGCATTNTTNTGC
JMFS111E04+           GAAGTGGAGAGACCACCCCCCTTCTCACACTCTCCATTACAAAATGATGCATTCTTCTGC
                      ____________________________________________________________
consensus             GAAGTGGAGAGACCACCCCCCTTCTCACACTCTCCATTACAAAATGATGCATTCTTCTGC
 
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JMFS099D06+           TTCTTCTCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
JMSF044D13+           TTNTTCTCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
JMFS111E04+           TTCTTCTCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
JMSF032N20+                 TCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
JMSF021I19+                CTCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
                      ____________________________________________________________
consensus             TTCTTCTCCTCCACCCCCCCACTCACTGCATGGTTCAGATCAATTTCCATGAAAAAAAAC
 
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JMFS099D06+           CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
JMSF044D13+           CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
JMFS111E04+           CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
JMSF032N20+           CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
JMSF021I19+           CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
                      ____________________________________________________________
consensus             CCCAGTTGAGGTCTGCTGTTTTTATCACTATATCATCATAAACTCTCCAGAGGAGAAAAC
 
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JMFS099D06+           CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
JMSF044D13+           CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
JMFS111E04+           CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
JMSF032N20+           CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
JMSF021I19+           CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
                      ____________________________________________________________
consensus             CAAAACCAAAACCAAAAACACCACAAAACAAAGCCTGGAAAAACACTTGAAAGTGGGGGT
 
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JMFS099D06+           GGGACTTGGGAGGAAGAGCAATCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
JMSF044D13+           GGGACTTGGGAGGAAGAGCAATCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
JMFS111E04+           GGGACTTGGGAGGAAGAGCAATCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
JMSF032N20+           GGGACTTGGGAGGAAGAGCAATCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
JMSF021I19+           GGGACTTGGGAGGAAGAGCANTCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
                      ____________________________________________________________
consensus             GGGACTTGGGAGGAAGAGCAATCAAGTGGAAAGTTAGAAAATTGGAAATGAAGTCAAATC
 
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JMFS099D06+           GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
JMSF044D13+           GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
JMFS111E04+           GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
JMSF032N20+           GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
JMSF021I19+           GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
                      ____________________________________________________________
consensus             GTATATATATATATATAAATATATAAAGGTAGAGTCTTTAAAGCAAGAACAGGAGATTAA
 
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JMFS099D06+           GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
JMSF044D13+           GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
JMFS111E04+           GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
JMSF032N20+           GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
JMSF021I19+           GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
                      ____________________________________________________________
consensus             GAGGGGAATTGAATACTACAATACTTCTCCCAAGTATAAAAACATCAAGAACTTGTAGTC
 
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JMFS099D06+           ACGG                                                        
JMSF044D13+           ACGGTATTGCTAGACGGATGAGGAAAGC                                
JMFS111E04+           ACGGTATTGCTAGACGGATGAGGAAAGCGAAAGAAAGTTGTATATATGTGTATATATATA
JMSF032N20+           ACGGTATTGCTAGACGGATGAGGAAAGCGAAAGAAAGTTGTATATATGTGTATATATATA
JMSF021I19+           ACGGTATTGCTAGACGGATGAGGAAAGCGAAAGAAAGTTGTATATATGTGTATATATATA
                      ____________________________________________________________
consensus             ACGGTATTGCTAGACGGATGAGGAAAGCGAAAGAAAGTTGTATATATGTGTATATATATA
 
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JMFS111E04+           TATACACATATATATAACAGGGAATTCAAAGCATGATTCCCCTCCCCCATTTTTCGTTCT
JMSF032N20+           TATACACATATATATAACAGGGAATTCAAAGCATGATTCCCCTCCCCCATTTTTCGTTCT
JMSF021I19+           TATACACATATATATAACAGGGAATTCAAAGCATGATTCCCCTCCCCCATTTTTCGTTCT
                      ____________________________________________________________
consensus             TATACACATATATATAACAGGGAATTCAAAGCATGATTCCCCTCCCCCATTTTTCGTTCT
 
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JMFS111E04+           GAGAAGGGGGAGCAGATGAAACAGGAGACGTAGACAATTGCT                  
JMSF032N20+           GAGAAGGGGGAGCAGATGAAACAGGAGACGTAGACAATTGCTAAGGAAGCA         
JMSF021I19+           GAGAAGGGGGAGCAGATGAAACAGGAGACGTAGACAATTGCTAAGGAAGCACAGAAGCTC
                      ____________________________________________________________
consensus             GAGAAGGGGGAGCAGATGAAACAGGAGACGTAGACAATTGCTAAGGAAGCACAGAAGCTC